>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2|
          Length = 112

 Score =  168 bits (425), Expect = 9e-42
 Identities = 84/102 (82%), Positives = 92/102 (90%)
 Frame = +2

Query: 38  MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRI 217
           M   Q K+GLFVG+NKGHVVT+REL PRP  RKGK +KR +F+RNLI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 218 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 343
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102

>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3|
          Length = 108

 Score =  167 bits (422), Expect = 2e-41
 Identities = 82/95 (86%), Positives = 91/95 (95%)
 Frame = +2

Query: 59  SGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVG 238
           +GLFVG+NKGHVVTKRE PPRP++RKGK +KR +F+RNLI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 239 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 343
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 98

>RL36A_ARATH (O80929) 60S ribosomal protein L36-1|
          Length = 113

 Score =  166 bits (421), Expect = 3e-41
 Identities = 82/96 (85%), Positives = 90/96 (93%)
 Frame = +2

Query: 56  KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 235
           K+GLFVG+NKGHVVT+REL PRP+ RKGK +KR +F+R LIREVAG APYEKRITELLKV
Sbjct: 7   KTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKV 66

Query: 236 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 343
           GKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS
Sbjct: 67  GKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102

>RL36_DAUCA (P52866) 60S ribosomal protein L36|
          Length = 106

 Score =  138 bits (347), Expect(2) = 1e-35
 Identities = 68/91 (74%), Positives = 77/91 (84%)
 Frame = +2

Query: 38  MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRI 217
           MAP QP +GLFVG+NKGH+VTK+EL PRPSDRKGK +KR  FVRNLIREVAGF PYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 218 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 310
           TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61  TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90



 Score = 31.2 bits (69), Expect(2) = 1e-35
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 307 RGDVKCPQEDEVWWW 351
           RGDV+C   DE WWW
Sbjct: 91  RGDVQCSPPDEGWWW 105

>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36|
          Length = 101

 Score =  125 bits (315), Expect = 5e-29
 Identities = 63/91 (69%), Positives = 76/91 (83%)
 Frame = +2

Query: 71  VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 250
           VG+NKGH VTK+   PRPS RKG  ++RV  VR ++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 343
           ALK+ KRKLGTH R KKKREEM+ VLRKM++
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQA 96

>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A|
          Length = 99

 Score =  118 bits (295), Expect = 1e-26
 Identities = 57/93 (61%), Positives = 77/93 (82%)
 Frame = +2

Query: 62  GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGK 241
           GL VG+NKG V+TKR+LP RPS RKG+ +KR  FVR+++REVAGFAPYE+R+ EL++  +
Sbjct: 4   GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query: 242 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           DKRA K+AK++LGT KRAK K EE++SV++  R
Sbjct: 64  DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96

>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36|
          Length = 104

 Score =  116 bits (290), Expect = 4e-26
 Identities = 58/90 (64%), Positives = 70/90 (77%)
 Frame = +2

Query: 71  VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 250
           VG+NKGH VTK    PR S R+G+ TK   FVR++IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           ALK  K+++GTH RAK+KREE+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36|
          Length = 104

 Score =  116 bits (290), Expect = 4e-26
 Identities = 58/90 (64%), Positives = 70/90 (77%)
 Frame = +2

Query: 71  VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 250
           VG+NKGH VTK    PR S R+G+ TK   FVR++IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           ALK  K+++GTH RAK+KREE+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B|
          Length = 99

 Score =  116 bits (290), Expect = 4e-26
 Identities = 56/93 (60%), Positives = 75/93 (80%)
 Frame = +2

Query: 62  GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGK 241
           GL VG+NKG  +TKR+LP RPS RKG  +KR  FVR+++REVAGFAPYE+R+ EL++  +
Sbjct: 4   GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query: 242 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           DKRA K+AK++LGT KRAK K EE++SV++  R
Sbjct: 64  DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96

>RL36_BOVIN (Q3T171) 60S ribosomal protein L36|
          Length = 104

 Score =  115 bits (288), Expect = 7e-26
 Identities = 58/90 (64%), Positives = 70/90 (77%)
 Frame = +2

Query: 71  VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 250
           VG+NKGH VTK    PR S R+G+ TK   FVR++IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           ALK  K+++GTH RAK+KREE+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_RAT (P39032) 60S ribosomal protein L36|
          Length = 104

 Score =  114 bits (284), Expect = 2e-25
 Identities = 57/90 (63%), Positives = 69/90 (76%)
 Frame = +2

Query: 71  VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 250
           VG+NKGH VTK    PR S R+G+ TK   FVR++IREV  FAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKR 67

Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           ALK  K+++GTH RAK+KREE+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_MOUSE (P47964) 60S ribosomal protein L36|
          Length = 104

 Score =  107 bits (268), Expect = 2e-23
 Identities = 54/89 (60%), Positives = 66/89 (74%)
 Frame = +2

Query: 71  VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 250
           VG+NKGH VTK    PR S R+ + T    FVR++IREV GFAPYE+R  ELLKV K KR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKR 67

Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKM 337
           ALK  K+++GTH RAK+KREE+S+VL  M
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAM 96

>RL36_CAEEL (P49181) 60S ribosomal protein L36|
          Length = 103

 Score =  105 bits (263), Expect = 6e-23
 Identities = 48/93 (51%), Positives = 67/93 (72%)
 Frame = +2

Query: 62  GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGK 241
           GL VG+NKGH  T+  +  R +  KG  +K+   VR L+RE+ GFAPYE+R+ E+L++ K
Sbjct: 7   GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISK 66

Query: 242 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           DKRALK  KR++GTH+RAK KREE+ +V+   R
Sbjct: 67  DKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 99

>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)|
          Length = 105

 Score =  104 bits (259), Expect = 2e-22
 Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
 Frame = +2

Query: 38  MAPSQP-KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKR 214
           MA   P K+GL VG+NKGH  T R + PR S  KG  +KR  FVR +++EVAG APYE+R
Sbjct: 1   MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERR 60

Query: 215 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           + ELL+  KDKRA K+AK++LGT  RAK+K +E+  V+ + R
Sbjct: 61  VIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESR 102

>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)|
          Length = 99

 Score =  104 bits (259), Expect = 2e-22
 Identities = 48/95 (50%), Positives = 72/95 (75%)
 Frame = +2

Query: 56  KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 235
           KSG+  G+NKG   T +E+ P+ S RKG  ++R +FVR++++EVAG APYE+R+ EL++ 
Sbjct: 3   KSGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRN 62

Query: 236 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
             +KRA K+AK++LGTHKRA +K EEM+ V+ + R
Sbjct: 63  AGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97

>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)|
          Length = 115

 Score =  100 bits (248), Expect = 3e-21
 Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 10/102 (9%)
 Frame = +2

Query: 65  LFVGINKGHVVTKRELPPRPSDRKGKG----------TKRVLFVRNLIREVAGFAPYEKR 214
           L +G+NKGH  +K        D+K KG          T+   F+R+L+REV G APYEKR
Sbjct: 7   LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKR 66

Query: 215 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
             ELLKV KDKRALK  KR+LGTH RAK+KREE+S++L ++R
Sbjct: 67  TMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108

>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)|
          Length = 99

 Score = 92.0 bits (227), Expect = 9e-19
 Identities = 43/95 (45%), Positives = 68/95 (71%)
 Frame = +2

Query: 56  KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 235
           K+G+ +G+NKG  VT+    P+ S +KG  + R  FVR+L+RE+AG +PYE+R+ +L++ 
Sbjct: 3   KTGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62

Query: 236 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
             +KRA KVAK++LG+  RAK K EEM++++   R
Sbjct: 63  SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)|
          Length = 99

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 43/95 (45%), Positives = 67/95 (70%)
 Frame = +2

Query: 56  KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 235
           K+G+ +G+NKG  VT     P+ S +KG  + R  FVR+L+RE+AG +PYE+R+ +L++ 
Sbjct: 3   KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62

Query: 236 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
             +KRA KVAK++LG+  RAK K EEM++++   R
Sbjct: 63  SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 197 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 319
           A Y K + + LK  K+KR  K+AKR+  +  RA + + E S
Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247

>5HT6R_PANTR (Q5IS65) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6)
          Length = 440

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = -3

Query: 252 ARLSFPTLRSSVIRFS*GAKPATSLIKFLTNSTLLVPFPLRSD-----GRGGSSRLVTTW 88
           A L+ P+LR+S      G +P  SL        L +P P  SD     G GGSS L  T 
Sbjct: 346 ASLASPSLRTSHS----GPRPGLSL-----QQVLPLPLPPDSDSDSDAGSGGSSGLRLTA 396

Query: 87  PLLMP---TKSPDLGCDGAMA 34
            LL+P   T+ P L    A A
Sbjct: 397 QLLLPGEATRDPPLPTRAAAA 417

>FBXW8_HUMAN (Q8N3Y1) F-box/WD-repeat protein 8 (F-box and WD-40 domain protein|
           8) (F-box only protein 29)
          Length = 598

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 7/31 (22%)
 Frame = +1

Query: 331 EDEVWWWCCCRQEE-------IDFACWRTLF 402
           EDEV W+  C+QE         D++CW+ +F
Sbjct: 151 EDEVLWYRLCQQEGHLPDSSISDYSCWKLIF 181

>5HT6R_HUMAN (P50406) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6)
          Length = 440

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = -3

Query: 252 ARLSFPTLRSSVIRFS*GAKPATSLIKFLTNSTLLVPFPLRSD-----GRGGSSRLVTTW 88
           A L+ P+LR+S      G +P  SL        L +P P  SD     G GGSS L  T 
Sbjct: 346 ASLASPSLRTSHS----GPRPGLSL-----QQVLPLPLPPDSDSDSDAGSGGSSGLRLTA 396

Query: 87  PLLMP---TKSPDLGCDGAMA 34
            LL+P   T+ P L    A A
Sbjct: 397 QLLLPGEATQDPPLPTRAAAA 417

>Y1220_SULTO (Q972A7) Hypothetical protein ST1220|
          Length = 163

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 221 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 340
           E  +V   K  +K AKRK    KRA KK++  S   RK R
Sbjct: 122 EFSEVKPKKEKIKKAKRKKKGAKRASKKQKAKSKSARKSR 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,725,685
Number of Sequences: 219361
Number of extensions: 1324541
Number of successful extensions: 3946
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3938
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)