ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal3d16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1205 Score = 389 bits (196), Expect = e-105 Identities = 367/424 (86%) Strand = Plus / Plus Query: 128 tgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctccctcaccgcc 187 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 141 tgggaggaagtcaacgagtcgccggcatggcaggacggcgccttcttctccctctccgcc 200 Query: 188 gcctacgccctcgtctccgccgttgcgctgattcagctggtcaggatccagcgcagagtg 247 || |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| Sbjct: 201 gcatacgccctcgtctccgccgtcgcgctgattcaattgatcaggatccagcgccgagtg 260 Query: 248 cccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtcaatggg 307 ||||| ||||| ||||||||||||||||| || ||||||||||||||| | |||||||| Sbjct: 261 cccgaattcggatggaccacgcagaaggtctttcacctcatgaacttccttgtcaatgga 320 Query: 308 gttcgtgccgttgtattcggattccatgcctatgtcttcctcctccaaacaaaagtttat 367 || ||||| | || || ||||||||| | |||||||||| ||| ||||||||||| Sbjct: 321 gtccgtgctctcgtctttggattccatctccatgtcttccttctctccgcaaaagtttat 380 Query: 368 aagttggtgttactagacctccccggcttactgttcttctcggcctacaccttacttgtt 427 ||||||||| | ||||||||||||||||| |||| ||||| ||||||| | |||||| Sbjct: 381 aagttggtgctgctagacctccccggcttgttgtttttctccacctacactctgcttgtt 440 Query: 428 cttttctgggcagaaatataccatcaggctaggagtctcccaaccgataagttaaggatt 487 || |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 441 ctcttctgggcagaaatataccatcaggccaggagcctcccaacagataagttaaggatt 500 Query: 488 atatacgtagccgttaatagtatcgtatatgcaattcaggtctgtatttgggtgtacctt 547 |||||| ||||||| ||| ||| | || |||||||||| ||||||||||| ||||| Sbjct: 501 atatacatagccgtcaatgccatcatttacacaattcaggtttgtatttgggtatacctc 560 Query: 548 ggaa 551 |||| Sbjct: 561 ggaa 564
>dbj|AK066373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062G10, full insert sequence Length = 1205 Score = 373 bits (188), Expect = e-100 Identities = 365/424 (86%) Strand = Plus / Plus Query: 128 tgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctccctcaccgcc 187 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 141 tgggaggaagtcaacgagtcgccggcatggcaggacggcgccttcttctccctctccgcc 200 Query: 188 gcctacgccctcgtctccgccgttgcgctgattcagctggtcaggatccagcgcagagtg 247 || ||||||||||||||||| | ||||||||||| || |||||||||||||| ||||| Sbjct: 201 gcatacgccctcgtctccgcactcgcgctgattcaattgatcaggatccagcgccgagtg 260 Query: 248 cccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtcaatggg 307 ||||| ||||| ||||||||||||||||| || ||||||||||||||| | |||||||| Sbjct: 261 cccgaattcggatggaccacgcagaaggtctttcacctcatgaacttccttgtcaatgga 320 Query: 308 gttcgtgccgttgtattcggattccatgcctatgtcttcctcctccaaacaaaagtttat 367 || ||||| | || || ||||||||| | |||||||||| ||| ||||||||||| Sbjct: 321 gtccgtgctctcgtctttggattccatctccatgtcttccttctctccgcaaaagtttat 380 Query: 368 aagttggtgttactagacctccccggcttactgttcttctcggcctacaccttacttgtt 427 ||||||||| | ||||||||||||||||| |||| ||||| ||||||| | |||||| Sbjct: 381 aagttggtgctgctagacctccccggcttgttgtttttctccacctacactctgcttgtt 440 Query: 428 cttttctgggcagaaatataccatcaggctaggagtctcccaaccgataagttaaggatt 487 || |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 441 ctcttctgggcagaaatataccatcaggccaggagcctcccaacagataagttaaggatt 500 Query: 488 atatacgtagccgttaatagtatcgtatatgcaattcaggtctgtatttgggtgtacctt 547 |||||| ||||||| ||| ||| | || |||||||||| ||||||||||| ||||| Sbjct: 501 atatacatagccgtcaatgccatcatttacacaattcaggtttgtatttgggtatacctc 560 Query: 548 ggaa 551 |||| Sbjct: 561 ggaa 564
>ref|NM_184948.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1341 Score = 204 bits (103), Expect = 2e-49 Identities = 349/431 (80%) Strand = Plus / Plus Query: 119 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 178 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 265 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 324 Query: 179 ctcaccgccgcctacgccctcgtctccgccgttgcgctgattcagctggtcaggatccag 238 ||| ||||||||||||| |||||||||||||| |||||| |||| || |||| || ||| Sbjct: 325 ctctccgccgcctacgcgctcgtctccgccgtcgcgctggttcaattgatcagaattcag 384 Query: 239 cgcagagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtc 298 ||||||| || || || ||||| || |||||||| ||||| || |||||||| || Sbjct: 385 ttgcgagtgcctgaatttggttggactacccagaaggttttccatctgatgaactttgtt 444 Query: 299 gtcaatggggttcgtgccgttgtattcggattccatgcctatgtcttcctcctccaaaca 358 || || || |||||||| || || || ||||| ||||| | || ||||| | |||||| Sbjct: 445 gtaaacggagttcgtgctgtcgtgtttggatttcatgctcaagtgttcctttttcaaaca 504 Query: 359 aaagtttataagttggtgttactagacctccccggcttactgttcttctcggcctacacc 418 ||||| |||| ||||||||| | || || || || | || || |||||| | ||||| Sbjct: 505 aaagtgtatactttggtgttattggatcttcctggtcttctatttttctcgacatacacg 564 Query: 419 ttacttgttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataag 478 ||||||| || |||||||||||||||||||||||||||| || ||| || || || ||| Sbjct: 565 ctacttgtgctgttctgggcagaaatataccatcaggctaagaatcttcccactgacaag 624 Query: 479 ttaaggattatatacgtagccgttaatagtatcgtatatgcaattcaggtctgtatttgg 538 |||||||||||||| | || |||||| || | |||||| ||| ||||| ||||||||| Sbjct: 625 ctaaggattatatacatggcagttaatggtgttatatatgtaatccaggtttgtatttgg 684 Query: 539 gtgtaccttgg 549 | |||||||| Sbjct: 685 atataccttgg 695
>dbj|AK068863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P13, full insert sequence Length = 1929 Score = 204 bits (103), Expect = 2e-49 Identities = 349/431 (80%) Strand = Plus / Plus Query: 119 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 178 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 245 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 304 Query: 179 ctcaccgccgcctacgccctcgtctccgccgttgcgctgattcagctggtcaggatccag 238 ||| ||||||||||||| |||||||||||||| |||||| |||| || |||| || ||| Sbjct: 305 ctctccgccgcctacgcgctcgtctccgccgtcgcgctggttcaattgatcagaattcag 364 Query: 239 cgcagagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtc 298 ||||||| || || || ||||| || |||||||| ||||| || |||||||| || Sbjct: 365 ttgcgagtgcctgaatttggttggactacccagaaggttttccatctgatgaactttgtt 424 Query: 299 gtcaatggggttcgtgccgttgtattcggattccatgcctatgtcttcctcctccaaaca 358 || || || |||||||| || || || ||||| ||||| | || ||||| | |||||| Sbjct: 425 gtaaacggagttcgtgctgtcgtgtttggatttcatgctcaagtgttcctttttcaaaca 484 Query: 359 aaagtttataagttggtgttactagacctccccggcttactgttcttctcggcctacacc 418 ||||| |||| ||||||||| | || || || || | || || |||||| | ||||| Sbjct: 485 aaagtgtatactttggtgttattggatcttcctggtcttctatttttctcgacatacacg 544 Query: 419 ttacttgttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataag 478 ||||||| || |||||||||||||||||||||||||||| || ||| || || || ||| Sbjct: 545 ctacttgtgctgttctgggcagaaatataccatcaggctaagaatcttcccactgacaag 604 Query: 479 ttaaggattatatacgtagccgttaatagtatcgtatatgcaattcaggtctgtatttgg 538 |||||||||||||| | || |||||| || | |||||| ||| ||||| ||||||||| Sbjct: 605 ctaaggattatatacatggcagttaatggtgttatatatgtaatccaggtttgtatttgg 664 Query: 539 gtgtaccttgg 549 | |||||||| Sbjct: 665 atataccttgg 675
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 133 bits (67), Expect = 7e-28 Identities = 91/99 (91%) Strand = Plus / Minus Query: 119 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 178 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 20233528 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 20233469 Query: 179 ctcaccgccgcctacgccctcgtctccgccgttgcgctg 217 ||| ||||||||||||| |||||||||||||| |||||| Sbjct: 20233468 ctctccgccgcctacgcgctcgtctccgccgtcgcgctg 20233430 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 420 tacttgttcttttctgggcagaaatataccatcagg 455 ||||||| || ||||||||||||||||||||||||| Sbjct: 20230710 tacttgtgctgttctgggcagaaatataccatcagg 20230675 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 294 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 1102752 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 1102700
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete sequence Length = 156929 Score = 133 bits (67), Expect = 7e-28 Identities = 91/99 (91%) Strand = Plus / Minus Query: 119 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 178 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 28835 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 28776 Query: 179 ctcaccgccgcctacgccctcgtctccgccgttgcgctg 217 ||| ||||||||||||| |||||||||||||| |||||| Sbjct: 28775 ctctccgccgcctacgcgctcgtctccgccgtcgcgctg 28737 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 420 tacttgttcttttctgggcagaaatataccatcagg 455 ||||||| || ||||||||||||||||||||||||| Sbjct: 26017 tacttgtgctgttctgggcagaaatataccatcagg 25982
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 133 bits (67), Expect = 7e-28 Identities = 91/99 (91%) Strand = Plus / Minus Query: 119 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 178 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 20226557 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 20226498 Query: 179 ctcaccgccgcctacgccctcgtctccgccgttgcgctg 217 ||| ||||||||||||| |||||||||||||| |||||| Sbjct: 20226497 ctctccgccgcctacgcgctcgtctccgccgtcgcgctg 20226459 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 420 tacttgttcttttctgggcagaaatataccatcagg 455 ||||||| || ||||||||||||||||||||||||| Sbjct: 20223739 tacttgtgctgttctgggcagaaatataccatcagg 20223704 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 294 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 1102750 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 1102698
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 131 bits (66), Expect = 3e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 128 tgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctccctcaccgcc 187 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 149045 tgggaggaagtcaacgagtcgccggcatggcaggacggcgccttcttctccctctccgcc 148986 Query: 188 gcctacgccctcgtctccgccgttgcgctg 217 || |||||||||||||||||||| |||||| Sbjct: 148985 gcatacgccctcgtctccgccgtcgcgctg 148956 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 228 tcaggatccagcgcagagtgcccgagttcggctggaccacgcagaaggtgttccacctca 287 |||||||||||||| |||||||||| ||||| ||||||||||||||||| || ||||||| Sbjct: 148826 tcaggatccagcgccgagtgcccgaattcggatggaccacgcagaaggtctttcacctca 148767 Query: 288 tgaacttcgtcgtcaatgg 306 |||||||| | |||||||| Sbjct: 148766 tgaacttccttgtcaatgg 148748 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 362 gtttataagttggtgttactagacctccccggcttactgttcttctcggcctacacctta 421 ||||||||||||||| | ||||||||||||||||| |||| ||||| ||||||| | Sbjct: 148457 gtttataagttggtgctgctagacctccccggcttgttgtttttctccacctacactctg 148398 Query: 422 cttgttcttttctgggcagaaatataccatcaggc 456 |||||||| |||||||||||||||||||||||||| Sbjct: 148397 cttgttctcttctgggcagaaatataccatcaggc 148363 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 452 caggctaggagtctcccaaccgataagttaaggattatatacgtagccgt 501 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||| Sbjct: 148281 caggccaggagcctcccaacagataagttaaggattatatacatagccgt 148232 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 gccttcttctccctcaccgccgcc 190 ||||||||||||||||||| |||| Sbjct: 20032121 gccttcttctccctcaccgtcgcc 20032098
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 131 bits (66), Expect = 3e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 128 tgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctccctcaccgcc 187 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 148344 tgggaggaagtcaacgagtcgccggcatggcaggacggcgccttcttctccctctccgcc 148285 Query: 188 gcctacgccctcgtctccgccgttgcgctg 217 || |||||||||||||||||||| |||||| Sbjct: 148284 gcatacgccctcgtctccgccgtcgcgctg 148255 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 228 tcaggatccagcgcagagtgcccgagttcggctggaccacgcagaaggtgttccacctca 287 |||||||||||||| |||||||||| ||||| ||||||||||||||||| || ||||||| Sbjct: 148125 tcaggatccagcgccgagtgcccgaattcggatggaccacgcagaaggtctttcacctca 148066 Query: 288 tgaacttcgtcgtcaatgg 306 |||||||| | |||||||| Sbjct: 148065 tgaacttccttgtcaatgg 148047 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 362 gtttataagttggtgttactagacctccccggcttactgttcttctcggcctacacctta 421 ||||||||||||||| | ||||||||||||||||| |||| ||||| ||||||| | Sbjct: 147756 gtttataagttggtgctgctagacctccccggcttgttgtttttctccacctacactctg 147697 Query: 422 cttgttcttttctgggcagaaatataccatcaggc 456 |||||||| |||||||||||||||||||||||||| Sbjct: 147696 cttgttctcttctgggcagaaatataccatcaggc 147662 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 452 caggctaggagtctcccaaccgataagttaaggattatatacgtagccgt 501 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||| Sbjct: 147580 caggccaggagcctcccaacagataagttaaggattatatacatagccgt 147531
>ref|NM_118299.2| Arabidopsis thaliana TOM1 (TOBAMOVIRUS MULTIPLICATION 1) AT4G21790 (TOM1) mRNA, complete cds Length = 1405 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 301 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 327 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 386 Query: 302 aatggggttcgtgc 315 ||||| |||||||| Sbjct: 387 aatggagttcgtgc 400 Score = 40.1 bits (20), Expect = 7.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 404 ttctcggcctacaccttacttgttcttttctgggcagaaatataccatcaggctag 459 |||||||| ||||| | ||||| || ||||||||||| ||||| || |||||||| Sbjct: 489 ttctcggcatacacgctgcttgtgctgttctgggcagagatatatcaccaggctag 544
>gb|AY079319.1| Arabidopsis thaliana unknown protein (At4g21790) mRNA, complete cds Length = 907 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 301 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 184 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 243 Query: 302 aatggggttcgtgc 315 ||||| |||||||| Sbjct: 244 aatggagttcgtgc 257 Score = 40.1 bits (20), Expect = 7.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 404 ttctcggcctacaccttacttgttcttttctgggcagaaatataccatcaggctag 459 |||||||| ||||| | ||||| || ||||||||||| ||||| || |||||||| Sbjct: 346 ttctcggcatacacgctgcttgtgctgttctgggcagagatatatcaccaggctag 401
>gb|AY046049.1| Arabidopsis thaliana unknown protein (At4g21790) mRNA, complete cds Length = 1433 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 301 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 327 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 386 Query: 302 aatggggttcgtgc 315 ||||| |||||||| Sbjct: 387 aatggagttcgtgc 400 Score = 40.1 bits (20), Expect = 7.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 404 ttctcggcctacaccttacttgttcttttctgggcagaaatataccatcaggctag 459 |||||||| ||||| | ||||| || ||||||||||| ||||| || |||||||| Sbjct: 489 ttctcggcatacacgctgcttgtgctgttctgggcagagatatatcaccaggctag 544
>dbj|AB016925.1| Arabidopsis thaliana TOM1 mRNA, complete cds Length = 1369 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 301 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 324 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 383 Query: 302 aatggggttcgtgc 315 ||||| |||||||| Sbjct: 384 aatggagttcgtgc 397 Score = 40.1 bits (20), Expect = 7.5 Identities = 47/56 (83%) Strand = Plus / Plus Query: 404 ttctcggcctacaccttacttgttcttttctgggcagaaatataccatcaggctag 459 |||||||| ||||| | ||||| || ||||||||||| ||||| || |||||||| Sbjct: 486 ttctcggcatacacgctgcttgtgctgttctgggcagagatatatcaccaggctag 541
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 420 tacttgttcttttctgggcagaaatataccatcagg 455 ||||||| || ||||||||||||||||||||||||| Sbjct: 148796 tacttgtgctgttctgggcagaaatataccatcagg 148761
>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55 Length = 194916 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 301 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 188280 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 188339 Query: 302 aatgg 306 ||||| Sbjct: 188340 aatgg 188344
>emb|AL035527.1|ATF17L22 Arabidopsis thaliana DNA chromosome 4, BAC clone F17L22 (ESSAII project) Length = 107702 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 301 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 102222 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 102281 Query: 302 aatgg 306 ||||| Sbjct: 102282 aatgg 102286
>dbj|AB016924.1| Arabidopsis thaliana TOM1 gene, complete cds Length = 2733 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 301 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 630 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 689 Query: 302 aatgg 306 ||||| Sbjct: 690 aatgg 694
>gb|BT013938.1| Lycopersicon esculentum clone 132961F, mRNA sequence Length = 1286 Score = 48.1 bits (24), Expect = 0.031 Identities = 57/68 (83%) Strand = Plus / Plus Query: 248 cccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtcaatggg 307 ||||||| |||||||| || || ||||||||||| || |||||||| || || ||||| Sbjct: 212 cccgagtatggctggacaacacaaaaggtgttccatctgatgaactttgttgtaaatgga 271 Query: 308 gttcgtgc 315 |||||||| Sbjct: 272 gttcgtgc 279 Score = 44.1 bits (22), Expect = 0.48 Identities = 55/66 (83%) Strand = Plus / Plus Query: 422 cttgttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataagtta 481 |||||||| || ||||| || ||||| || |||||||||||| | ||||| |||||| | Sbjct: 386 cttgttctattttgggctgagatatatcaccaggctaggagtttaccaacagataagctc 445 Query: 482 aggatt 487 |||||| Sbjct: 446 aggatt 451
>dbj|AB193043.1| Lycopersicon esculentum LeTH3 mRNA for tobamovirus multiplication 1 homolog 3, complete cds Length = 1278 Score = 48.1 bits (24), Expect = 0.031 Identities = 57/68 (83%) Strand = Plus / Plus Query: 248 cccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtcaatggg 307 ||||||| |||||||| || || ||||||||||| || |||||||| || || ||||| Sbjct: 211 cccgagtatggctggacaacacaaaaggtgttccatctgatgaactttgttgtaaatgga 270 Query: 308 gttcgtgc 315 |||||||| Sbjct: 271 gttcgtgc 278 Score = 44.1 bits (22), Expect = 0.48 Identities = 55/66 (83%) Strand = Plus / Plus Query: 422 cttgttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataagtta 481 |||||||| || ||||| || ||||| || |||||||||||| | ||||| |||||| | Sbjct: 385 cttgttctattttgggctgagatatatcaccaggctaggagtttaccaacagataagctc 444 Query: 482 aggatt 487 |||||| Sbjct: 445 aggatt 450
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 91 cctcgtcgccgcggccaacgcgg 113 ||||||||||||||||||||||| Sbjct: 632002 cctcgtcgccgcggccaacgcgg 632024
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence Length = 150279 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 83565 cgccgcctacgccctcgtctccaccgt 83591
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 44695 cgccgcctacgccctcgtctccaccgt 44721
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 1238006 cgccgcctacgccctcgtctccaccgt 1237980
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 1345920 cgccgcctacgccctcgtctccaccgt 1345894 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 1187759 cgccgcctacgccctcgtctccaccgt 1187785
>dbj|AK067875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121C10, full insert sequence Length = 1611 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 271 cgccgcctacgccctcgtctccaccgt 297
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 1343641 cgccgcctacgccctcgtctccaccgt 1343615 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 1185480 cgccgcctacgccctcgtctccaccgt 1185506
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 1238006 cgccgcctacgccctcgtctccaccgt 1237980
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 cgccgcctacgccctcgtctccgccgt 210 |||||||||||||||||||||| |||| Sbjct: 54776 cgccgcctacgccctcgtctccaccgt 54802
>ref|NM_197550.1| Oryza sativa (japonica cultivar-group) putative transmembrane protein (OSJNBa0040D23.4), mRNA Length = 1294 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 134 gacgtcaacgagtcgccggcgtggcaggac 163 ||||| ||||||||||||| |||||||||| Sbjct: 262 gacgtgaacgagtcgccggtgtggcaggac 291
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 134 gacgtcaacgagtcgccggcgtggcaggac 163 ||||| ||||||||||||| |||||||||| Sbjct: 57794 gacgtgaacgagtcgccggtgtggcaggac 57823
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 134 gacgtcaacgagtcgccggcgtggcaggac 163 ||||| ||||||||||||| |||||||||| Sbjct: 20417646 gacgtgaacgagtcgccggtgtggcaggac 20417675
>dbj|AK101318.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D12, full insert sequence Length = 1284 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 134 gacgtcaacgagtcgccggcgtggcaggac 163 ||||| ||||||||||||| |||||||||| Sbjct: 252 gacgtgaacgagtcgccggtgtggcaggac 281
>dbj|AK061395.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-E02, full insert sequence Length = 1283 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 134 gacgtcaacgagtcgccggcgtggcaggac 163 ||||| ||||||||||||| |||||||||| Sbjct: 251 gacgtgaacgagtcgccggtgtggcaggac 280
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 134 gacgtcaacgagtcgccggcgtggcaggac 163 ||||| ||||||||||||| |||||||||| Sbjct: 20428918 gacgtgaacgagtcgccggtgtggcaggac 20428947
>ref|NM_187567.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 846 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 294 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 154 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 206
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 294 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 6456 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 6404
>ref|XM_393687.2| PREDICTED: Apis mellifera similar to CG30084-PB, isoform B (LOC410204), mRNA Length = 5953 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 gccttcttctccctcaccgcc 187 ||||||||||||||||||||| Sbjct: 1827 gccttcttctccctcaccgcc 1807
>gb|AF110525.1|FRTCRA1 Fugu rubripes T-cell receptor alpha-chain (TCRA) gene, partial sequence Length = 24813 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 344 ttcctcctccaaacaaaagtttataagtt 372 |||| |||||||||| ||||||||||||| Sbjct: 530 ttccacctccaaacacaagtttataagtt 502
>dbj|AB222377.1| Takifugu rubripes mRNA for T-cell receptor alpha chain, partial cds, clone:TRA1.22 Length = 520 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 344 ttcctcctccaaacaaaagtttataagtt 372 |||| |||||||||| ||||||||||||| Sbjct: 374 ttccacctccaaacacaagtttataagtt 346
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 93 tcgtcgccgcggccaacgcggtgct 117 ||||||| ||||||||||||||||| Sbjct: 1447681 tcgtcgcggcggccaacgcggtgct 1447657 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 cctcgtcgccgcggccaacgcggt 114 ||||||||||||||||| |||||| Sbjct: 3115669 cctcgtcgccgcggccatcgcggt 3115646
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 294 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 122967 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 122915
>dbj|AK104882.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H04, full insert sequence Length = 1304 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 294 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 330 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 382
>dbj|AK066854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C10, full insert sequence Length = 1434 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 242 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 294 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 422 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 474
>gb|AY608053.1| Cephalozia catenulata small ribosomal protein (rps4) gene, partial cds; chloroplast Length = 589 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gtgctccggggatggtggga 132 |||||||||||||||||||| Sbjct: 304 gtgctccggggatggtggga 285
>gb|AC167963.5| Mus musculus chromosome 1, clone RP24-171A4, complete sequence Length = 172954 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cctcctccaaacaaaagttt 365 |||||||||||||||||||| Sbjct: 91582 cctcctccaaacaaaagttt 91601
>gb|AC161411.11| Mus musculus chromosome 1, clone RP24-223E1, complete sequence Length = 154942 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cctcctccaaacaaaagttt 365 |||||||||||||||||||| Sbjct: 141566 cctcctccaaacaaaagttt 141547
>ref|XM_478433.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1600 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 gccttcttctccctcaccgccgcc 190 ||||||||||||||||||| |||| Sbjct: 762 gccttcttctccctcaccgtcgcc 739
>ref|XM_478432.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1810 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 gccttcttctccctcaccgccgcc 190 ||||||||||||||||||| |||| Sbjct: 810 gccttcttctccctcaccgtcgcc 833
>gb|AY462393.1| Schiffneria hyalina small ribosomal protein 4 (rps4) gene, partial cds; chloroplast Length = 576 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gtgctccggggatggtggga 132 |||||||||||||||||||| Sbjct: 292 gtgctccggggatggtggga 273
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cgccgcctacgccctcgtct 203 |||||||||||||||||||| Sbjct: 590198 cgccgcctacgccctcgtct 590217
>gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complete sequence Length = 185953 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ctccaaacaaaagtttataa 369 |||||||||||||||||||| Sbjct: 76542 ctccaaacaaaagtttataa 76561
>gb|AC010266.9| Homo sapiens chromosome 5 clone CTC-471C19, complete sequence Length = 129071 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tccaaacaaaagtttataag 370 |||||||||||||||||||| Sbjct: 114746 tccaaacaaaagtttataag 114765
>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome Length = 280334 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 520 aattcaggtctgtatttgggtgta 543 ||||||||||||||||||| |||| Sbjct: 67626 aattcaggtctgtatttggatgta 67649
>gb|AC084587.1|CBRG41F07 Caenorhabditis briggsae cosmid G41F07, complete sequence Length = 44027 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cttcttctccctcaccgccg 188 |||||||||||||||||||| Sbjct: 21262 cttcttctccctcaccgccg 21243
>gb|DQ163920.1| Bacteriophage SD1-M, complete genome Length = 281083 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 520 aattcaggtctgtatttgggtgta 543 ||||||||||||||||||| |||| Sbjct: 68721 aattcaggtctgtatttggatgta 68744
>dbj|AK109627.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B12, full insert sequence Length = 1599 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 gccttcttctccctcaccgccgcc 190 ||||||||||||||||||| |||| Sbjct: 762 gccttcttctccctcaccgtcgcc 739
>dbj|AK106236.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C04, full insert sequence Length = 1810 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 gccttcttctccctcaccgccgcc 190 ||||||||||||||||||| |||| Sbjct: 810 gccttcttctccctcaccgtcgcc 833
>gb|AY111295.1| Zea mays CL52038_1 mRNA sequence Length = 597 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccgccgcctacgccctcgtc 202 |||||||||||||||||||| Sbjct: 504 ccgccgcctacgccctcgtc 523
>dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1793_E11 Length = 101342 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 gccttcttctccctcaccgccgcc 190 ||||||||||||||||||| |||| Sbjct: 65681 gccttcttctccctcaccgtcgcc 65658
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 183 ccgccgcctacgccctcgtctccgccgttgcg 214 ||||||| ||||| |||||| ||||||||||| Sbjct: 1239499 ccgccgcgtacgcgctcgtcgccgccgttgcg 1239468
>emb|AL928587.7| Mouse DNA sequence from clone RP23-282M14 on chromosome 2, complete sequence Length = 218618 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ctccaaacaaaagtttataa 369 |||||||||||||||||||| Sbjct: 25803 ctccaaacaaaagtttataa 25784 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,783,176 Number of Sequences: 3902068 Number of extensions: 3783176 Number of successful extensions: 83420 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82700 Number of HSP's gapped (non-prelim): 716 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
