>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  300 bits (767), Expect = 2e-81
 Identities = 149/151 (98%), Positives = 149/151 (98%)
 Frame = +3

Query: 12  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 191
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 60

Query: 192 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 371
           WKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGG
Sbjct: 61  WKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGG 120

Query: 372 FYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           FYIAPAFMDKLVVHL KNFMTLPNIKIPLIL
Sbjct: 121 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLIL 151

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  267 bits (682), Expect = 1e-71
 Identities = 134/153 (87%), Positives = 141/153 (92%), Gaps = 2/153 (1%)
 Frame = +3

Query: 12  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD- 188
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD 
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQ 59

Query: 189 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTM 365
            +WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTM
Sbjct: 60  DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTM 119

Query: 366 GGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           GGFYIAP+FMDKLVVH+ KNFMTLPNIK+PLIL
Sbjct: 120 GGFYIAPSFMDKLVVHISKNFMTLPNIKVPLIL 152

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  230 bits (587), Expect = 1e-60
 Identities = 119/157 (75%), Positives = 134/157 (85%), Gaps = 6/157 (3%)
 Frame = +3

Query: 12  MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKR 179
           MAAAFSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE +
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETK 60

Query: 180 NTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDF 353
            TD  +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+F
Sbjct: 61  QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNF 120

Query: 354 DNTMGGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           DN M GFYIA  FMDKLVVHL KNFMTLPNIK+PLIL
Sbjct: 121 DNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLIL 157

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  223 bits (568), Expect = 2e-58
 Identities = 116/155 (74%), Positives = 129/155 (83%), Gaps = 4/155 (2%)
 Frame = +3

Query: 12  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 185
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + T
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 54

Query: 186 D--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDN 359
           D  +WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDN
Sbjct: 55  DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDN 114

Query: 360 TMGGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           TM G YIAPAFMDKL+VHL KNFMTLPNIK+PLIL
Sbjct: 115 TMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLIL 149

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  180 bits (457), Expect = 1e-45
 Identities = 93/146 (63%), Positives = 110/146 (75%)
 Frame = +3

Query: 27  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 206
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 207 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 386
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135

Query: 387 AFMDKLVVHLXKNFMTLPNIKIPLIL 464
           AFMDKLVVH+ KNF+TLPNIK+PLIL
Sbjct: 136 AFMDKLVVHITKNFLTLPNIKVPLIL 161

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  179 bits (453), Expect = 4e-45
 Identities = 92/148 (62%), Positives = 111/148 (75%), Gaps = 2/148 (1%)
 Frame = +3

Query: 27  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 200
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 201 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYI 380
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YI
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYI 133

Query: 381 APAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           APAFMDKLVVH+ KNFMTLPN+K+PLIL
Sbjct: 134 APAFMDKLVVHITKNFMTLPNMKVPLIL 161

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  177 bits (449), Expect = 1e-44
 Identities = 93/162 (57%), Positives = 116/162 (71%), Gaps = 11/162 (6%)
 Frame = +3

Query: 12  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 161
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 162 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 338
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 339 RKYDFDNTMGGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           R+Y+ DN M GFYIAPAFMDKLVVH+ KNF++LPNIKIPLIL
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLIL 161

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  177 bits (449), Expect = 1e-44
 Identities = 93/162 (57%), Positives = 116/162 (71%), Gaps = 11/162 (6%)
 Frame = +3

Query: 12  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 161
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 162 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 338
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 339 RKYDFDNTMGGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           R+Y+ DN M GFYIAPAFMDKLVVH+ KNF++LPNIKIPLIL
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLIL 161

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  173 bits (438), Expect = 2e-43
 Identities = 94/161 (58%), Positives = 110/161 (68%), Gaps = 16/161 (9%)
 Frame = +3

Query: 30  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 167
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 168 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 341
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 342 KYDFDNTMGGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           +Y+ DN + GFYIAPAFMDKLVVH+ KNF+ LPNIK+PLIL
Sbjct: 125 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLIL 165

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  171 bits (432), Expect = 1e-42
 Identities = 90/152 (59%), Positives = 108/152 (71%), Gaps = 4/152 (2%)
 Frame = +3

Query: 21  AFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--D 188
           + +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D
Sbjct: 17  SLNNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSD 73

Query: 189 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMG 368
           +WKGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ 
Sbjct: 74  RWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLD 133

Query: 369 GFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           GFYIAP+FMDKLVVH+ KNF+ LPNIK+PLIL
Sbjct: 134 GFYIAPSFMDKLVVHITKNFLKLPNIKVPLIL 165

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  169 bits (429), Expect = 2e-42
 Identities = 88/145 (60%), Positives = 111/145 (76%), Gaps = 3/145 (2%)
 Frame = +3

Query: 39  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 209
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 210 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 389
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FDN   GFYIAPA
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140

Query: 390 FMDKLVVHLXKNFMTLPNIKIPLIL 464
           F+DKLVVH+ KNFMTLPNIK+PLIL
Sbjct: 141 FLDKLVVHIAKNFMTLPNIKVPLIL 165

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  167 bits (424), Expect = 9e-42
 Identities = 91/142 (64%), Positives = 101/142 (71%), Gaps = 1/142 (0%)
 Frame = +3

Query: 42  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 218
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 219 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 398
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD DN +G FYIAPAFMD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137

Query: 399 KLVVHLXKNFMTLPNIKIPLIL 464
           KLVVH+ KNF+ LPNIKIPLIL
Sbjct: 138 KLVVHITKNFLNLPNIKIPLIL 159

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  167 bits (424), Expect = 9e-42
 Identities = 89/163 (54%), Positives = 108/163 (66%), Gaps = 14/163 (8%)
 Frame = +3

Query: 18  AAFSSTVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMA 155
           AA  ST+GA +  P              T F GK LKK     V+       +NR   + 
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVV 58

Query: 156 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 335
           A+ +DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ 
Sbjct: 59  AQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117

Query: 336 LRKYDFDNTMGGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           L+ Y  DN + GFYIAPAFMDKLVVH+ KNF+TLPNIK+PLIL
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLIL 160

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  167 bits (422), Expect = 2e-41
 Identities = 89/163 (54%), Positives = 109/163 (66%), Gaps = 14/163 (8%)
 Frame = +3

Query: 18  AAFSSTVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMA 155
           AA  ST+GA   T  N            FLG +LK      V+    +SK     F ++A
Sbjct: 2   AATVSTIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVA 55

Query: 156 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 335
            ++ +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S G
Sbjct: 56  EQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAG 115

Query: 336 LRKYDFDNTMGGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           LR Y +DN + GFYIAPAFMDKL VH+ KNF+TLPNIK+PLIL
Sbjct: 116 LRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLIL 158

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  167 bits (422), Expect = 2e-41
 Identities = 92/145 (63%), Positives = 107/145 (73%), Gaps = 3/145 (2%)
 Frame = +3

Query: 39  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 209
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 210 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 389
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+   DN   GFYIAPA
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138

Query: 390 FMDKLVVHLXKNFMTLPNIKIPLIL 464
           F+DKLVVH+ KNFMTLPNIK+PLIL
Sbjct: 139 FLDKLVVHITKNFMTLPNIKVPLIL 163

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  106 bits (265), Expect = 3e-23
 Identities = 54/100 (54%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
 Frame = +3

Query: 174 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 344
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ   +
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94

Query: 345 YDFDNTMGGFYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
             F+N   GFYI+PAF+DK+ +H+ KNFM LP IK+PLIL
Sbjct: 95  ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLIL 134

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = +3

Query: 372 FYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           +YIAP F+DKL VH+ KNF+ LP +++PLIL
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNLPGVRVPLIL 33

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 18/31 (58%), Positives = 26/31 (83%)
 Frame = +3

Query: 372 FYIAPAFMDKLVVHLXKNFMTLPNIKIPLIL 464
           +YIAP F+DKL VH+ KNF+ +P +++PLIL
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNIPGVRVPLIL 33

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -1

Query: 377 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 201
           +EA  G  E V P+A+  V    +DG+V        EER  + + +G  ++V G+++ +
Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 42  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 221
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 222 D--QQDITRGKGIVDSLFQAPTGDG 290
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -2

Query: 289 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 143
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>PRMA_LEGPH (Q5ZYB1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -1

Query: 449 LDVGQGHEVFXEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 285
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQNPVHLVIANILLAPLI 233

Query: 284 ARGRLEERVHDALPSGDVLLVVG 216
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>PRMA_LEGPL (Q5WZ79) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -1

Query: 449 LDVGQGHEVFXEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 285
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISSPEALQNPVHLVIANILLAPLI 233

Query: 284 ARGRLEERVHDALPSGDVLLVVG 216
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>PRMA_LEGPA (Q5X7S8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -1

Query: 449 LDVGQGHEVFXEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 285
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   L+ A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISTPEALQNPVHLIIANILLAPLI 233

Query: 284 ARGRLEERVHDALPSGDVLLVVG 216
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1060

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = +3

Query: 108  NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 287
            N+H K +      + A +  D  R       LAY+++D    +       D +F A +G 
Sbjct: 807  NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858

Query: 288  GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLXKNFMTLPNI 446
            G   HEA     E  S+   KYDF+  + G  + P  +  L      NF  L  +
Sbjct: 859  GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 210 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 344
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 120 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 278
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -1

Query: 458 EWDLDVGQGHEVFXEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAEDGLVGAVAR 279
           +W  + G+G     E +N L  +  S+ + S G        +  DV  G E    G V+ 
Sbjct: 83  DWAEEGGEGSVAVEETENSLESQDVSEGDESEG------DASEGDVSEGDES--EGDVSE 134

Query: 278 GRLEERVHDALPSGDVLLVVGDI 210
           G + ER     PS +  L VG++
Sbjct: 135 GAVSERAEFPEPSEEAKLFVGNL 157

>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 421

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 177 RNTDKWKGLAYDISDDQQDITRGKGI 254
           R+  K KG A++ISDD + +   KGI
Sbjct: 46  RDVKKHKGYAFEISDDLESVIEDKGI 71

>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 251

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -1

Query: 377 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 198
           +E   G  E + P+A  DVL+ AE G+       R+ E   DAL  G  ++  GD+ + T
Sbjct: 188 LEVDLGTFEELAPEAPEDVLLVAESGVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246

>SWC3_ASHGO (Q758T8) SWR1-complex protein 3|
          Length = 688

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 18  AAFSSTVGAPASTPTNF-LGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKW 194
           A  SST GAP      F  G  + K  TSA+  HG  S+      + AE     R   K+
Sbjct: 434 ATLSSTDGAPPLNRRQFPCGIWVTKMQTSALEAHGAISEKGTTITIKAEEGTAPRQKRKY 493

Query: 195 KGLAYDISDDQQDI 236
                ++ D+ + +
Sbjct: 494 TKRKKEVEDEDKSM 507


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.120    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,935,349
Number of Sequences: 219361
Number of extensions: 1050434
Number of successful extensions: 2810
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2795
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)