ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2o10 |
|---|---|
| Clone Library Name | barley_pub |
>YP65_CAEEL (Q09214) Hypothetical protein B0495.5| Length = 729 Score = 83.2 bits (204), Expect = 3e-16 Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 9/161 (5%) Frame = +2 Query: 14 HFEKMLYDQGQIANAYLDTYVITGDEY--YSSVARDILDYLRRDMIGEDGEIFSAEDADS 187 HFEKMLYDQ Q+ Y D + +T ++ V DI Y+++ + +DG ++AEDADS Sbjct: 281 HFEKMLYDQSQLLATYSDFHKLTERKHDNVKHVINDIYQYMQK-ISHKDGGFYAAEDADS 339 Query: 188 AEYEGDARKKEGSFYVWTSQEIEDTLGE----NAELF---KNHYYVKSSGNCDLSGMSDP 346 + K EG+F W +EI+ LG+ +A LF +++ V+ SGN ++ SDP Sbjct: 340 LPNHNSSNKVEGAFCAWEKEEIKQLLGDKKIGSASLFDVVADYFDVEDSGN--VARSSDP 397 Query: 347 HNEFSGKNVLIERKPGSLMASKYGKSVDEYYGILGECRQKL 469 H E KNVL + A+ + SV E + E ++ L Sbjct: 398 HGELKNKNVLRKLLTDEECATNHEISVAELKKGIDEAKEIL 438
>YYAL_BACSU (P37512) Hypothetical protein yyaL| Length = 689 Score = 80.5 bits (197), Expect = 2e-15 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Frame = +2 Query: 14 HFEKMLYDQGQIANAYLDTYVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDADSAE 193 HFEKMLYD + AY + Y +T + Y + I+ +++R+M EDG FSA DAD+ Sbjct: 267 HFEKMLYDNALLLTAYTEAYQVTQNSRYKEICEQIITFIQREMTHEDGSFFSALDADT-- 324 Query: 194 YEGDARKKEGSFYVWTSQEIEDTLGEN-AELFKNHYYVKSSGNCDLSGMSDPHNEFSGKN 370 EG+ EG +YVW+ +EI TLG++ L+ Y + GN F GKN Sbjct: 325 -EGE----EGKYYVWSKEEILKTLGDDLGTLYCQVYDITEEGN------------FEGKN 367 Query: 371 V 373 + Sbjct: 368 I 368
>NUCG_CAEEL (Q95NM6) Endonuclease G, mitochondrial precursor (EC 3.1.30.-)| (Endo G) (Ced-3 protease suppressor 6) Length = 308 Score = 33.1 bits (74), Expect = 0.37 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%) Frame = +2 Query: 44 QIANAYLDTYVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDADSAEYEGDARKKEG 223 ++A +++Y+ITG Y + D Y++ +IG++ A +E K E Sbjct: 193 RVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFEL 252 Query: 224 SFYVWTSQEIEDTLGENAELFKNHY---YVKSSGNCDLSGMSDP 346 Y+ + IEDT+ E+ K H V+ S ++ DP Sbjct: 253 ESYILPNAVIEDTV----EISKFHVPLDAVERSAGLEIFARLDP 292
>CCA_SULSO (Q97Z92) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 412 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +2 Query: 71 YVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDADSAEYEGDARK 214 Y+ G +YYS D + +GEDG ++S ++ + E A+K Sbjct: 330 YLNIGPQYYSGTIEDFIQKNDNIWVGEDGRLYSIKERKEYDAETIAKK 377
>RIR1_CAEEL (Q03604) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleotide reductase large chain) Length = 788 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +2 Query: 230 YVWTSQEIEDTLGENAELFKNHYYVKSSGNCDLSGMSDPHNEFSGKNV 373 Y +TS E D N +F+ YY +C+L+ ++ P++ + G V Sbjct: 523 YPFTSAEARDL---NKRIFETIYYAALEASCELAELNGPYSTYEGSPV 567
>RPOA_TREDE (Q73PK8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 351 Score = 30.4 bits (67), Expect = 2.4 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Frame = +2 Query: 233 VWTSQEI--EDTLGENAELFKNHYYVKSSGN-CDLSGMSDPHNEFSGKNVLIERKPGSLM 403 +WT + ED LGE A++ K+H+ + + N D G + NE + L+ +L Sbjct: 215 IWTDSTVRPEDVLGEAAKIAKDHFSIFINFNENDYLGEDEDDNEEAVIKQLLATSINTLD 274 Query: 404 ASKYGKSVDEYYGI--LGECRQK 466 S K+ + GI LGE QK Sbjct: 275 FSVRAKNCLDSAGIKTLGELAQK 297
>CCA_SULSH (P77978) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 412 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 71 YVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDADSAEYEGDARK 214 Y+ G +YYS D + +GEDG ++S ++ E A+K Sbjct: 330 YLNIGPQYYSETIDDFIQKNDNIWVGEDGRLYSIKERKEYNAEAIAKK 377
>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)| Length = 4289 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Frame = +2 Query: 71 YVITGDEYYSSVARDILDYLRRDMIGE--DGEIFSAEDADSAEYE 199 Y + ++ Y+SVAR I +YL+R ++G DG + + D ++E Sbjct: 925 YPLRANQTYTSVARHIHEYLQRQVLGSSADGALLVSLDGLRGQFE 969
>YQ29_SCHPO (Q10427) Hypothetical protein C11E10.09c in chromosome III| Length = 478 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +2 Query: 212 KKEGSFY-VWTSQEIEDTLGENAELFKNHYYVKSSGNCDLSG 334 KKE S+ +W Q I L + L ++++Y K+SGN L G Sbjct: 10 KKEPSYLKLWRKQVIYQVLTDRFALDEDNFYAKASGNLYLGG 51
>SIL1_CYLFU (Q9SE35) Silaffin 1 precursor (natSil-1) [Contains: Silaffin-1B;| Silaffin-1A2; Silaffin-1A1] Length = 265 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/85 (24%), Positives = 39/85 (45%) Frame = +2 Query: 167 SAEDADSAEYEGDARKKEGSFYVWTSQEIEDTLGENAELFKNHYYVKSSGNCDLSGMSDP 346 S+ED++ E + KK GS+Y + +++ G + + + + S + SG S Sbjct: 95 SSEDSEEEELRILSSKKSGSYYSYGTKKSGSYSGYSTKKSASRRILSSKKSGSYSGYST- 153 Query: 347 HNEFSGKNVLIERKPGSLMASKYGK 421 + + +L +K GS SK K Sbjct: 154 -KKSGSRRILSSKKSGSYSGSKGSK 177
>ZN133_HUMAN (P52736) Zinc finger protein 133| Length = 654 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +3 Query: 162 FSQQKMLTVQNMKVMQEKKRVLSMCGQVKRSKTHLGRTRSCSRTTTMLNRL 314 F Q+ LT+ M EK V CG+ K+HL R R +TT++ +RL Sbjct: 587 FLQKSHLTLHQMTHTGEKPYVCKTCGRGFSLKSHLSRHR---KTTSVHHRL 634
>SEC7_YEAST (P11075) Protein transport protein SEC7| Length = 2009 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/71 (32%), Positives = 30/71 (42%) Frame = +2 Query: 131 RRDMIGEDGEIFSAEDADSAEYEGDARKKEGSFYVWTSQEIEDTLGENAELFKNHYYVKS 310 R D GEDG+ ED D E GD ++ +S E GE++E S Sbjct: 87 RHDDEGEDGDEDEDEDEDEDEDNGDEDDEDVDS---SSSETSSEDGEDSESVSGESTESS 143 Query: 311 SGNCDLSGMSD 343 SG + S SD Sbjct: 144 SGEDEESDESD 154
>RADC_ACIAD (Q6F7Z8) DNA repair protein radC homolog| Length = 271 Score = 29.3 bits (64), Expect = 5.3 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 44 QIANAYLDTYVITGDEYYSSVARDILDYLRRDMIGEDGEIFSAEDADS 187 ++ YL+ Y D + +R +LDYLR +++GE E+F+ DS Sbjct: 104 ELGRRYLNHY-FHQDALNLNSSRLVLDYLRYELLGEKQEVFAVLCLDS 150
>SYQ_SCHPO (Q9Y7Y8) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)| (Glutamine--tRNA ligase) (GlnRS) Length = 811 Score = 28.9 bits (63), Expect = 6.9 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%) Frame = +2 Query: 188 AEYEGDARKKEGSFYVWTSQEIED---TLGENAELFKNHYYVKSSG---NCDLSGMSDPH 349 AEY+ + KK +F W S++ E L LF N + + +L+ +P Sbjct: 672 AEYDASSSKKPKTFIQWVSRDKESNSPVLIAETRLFNNLFKCDNPAALKEQELAAQLNPE 731 Query: 350 NEFSGKNVLIERKPGSLMASKYGKSVDEYYGI 445 +E KN +IE L+ S D G+ Sbjct: 732 SEVVLKNSIIEPGIYDLIKSAPWPKTDSSAGV 763
>RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)| Length = 268 Score = 28.9 bits (63), Expect = 6.9 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 14/107 (13%) Frame = +2 Query: 41 GQIANAYLDTYVITGDEYYSSVARDILDYLR--RDMIGEDGEIFSAEDADSAEYEGDARK 214 GQ YL+TYV+ D Y +++A R +D G+ E+ + A GD R+ Sbjct: 132 GQKGIPYLNTYVVPTDTYMATIATRPTSGKRHNQDRSGDQQELRLHQGLMLAMCHGDWRR 191 Query: 215 KEGSFYVWTSQE------------IEDTLGENAELFKNHYYVKSSGN 319 VW Q+ +ED LG + + GN Sbjct: 192 NTA---VWCDQQQGEAKGSFETIHVEDALGHQFATRLGNVFTIGKGN 235
>CWC22_DEBHA (Q6BU84) Pre-mRNA-splicing factor CWC22| Length = 637 Score = 28.9 bits (63), Expect = 6.9 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 10/133 (7%) Frame = +2 Query: 86 DEYYSSVARDILDYLRRDMIGEDGEIFSAEDADSAEYEGDARKKEGSFYVWTSQEIEDTL 265 DE Y + + D +R+D++G+ E ED +S E + KE EI+D Sbjct: 278 DEQYDENEK-LYDNVRKDILGDSDE----EDDESEAEESEEDNKE-------ILEIKDMT 325 Query: 266 GENAELFKNHYY--VKSSGNCD--------LSGMSDPHNEFSGKNVLIERKPGSLMASKY 415 N ++ Y V SS + D L+ ++ +L++ + Sbjct: 326 ESNLLNYQKTVYLTVMSSMSSDEAVHKLIKLNFKKSNEEKYKNNEILVDM---IIKCCSQ 382 Query: 416 GKSVDEYYGILGE 454 K+ +YYG++GE Sbjct: 383 EKTYSKYYGVIGE 395
>NCPR_DROME (Q27597) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)| (P450R) Length = 679 Score = 28.9 bits (63), Expect = 6.9 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 13/103 (12%) Frame = +2 Query: 17 FEKMLYDQGQIANAYLDTYVITGDEYYSSVARDILDYLRRDMIGEDGE-----IFSAEDA 181 F K L G+ + + TG+E+ +A++ + Y + M+ + E + +D Sbjct: 73 FIKKLKASGRSLVVFYGSQTGTGEEFAGRLAKEGIRYRLKGMVADPEECDMEELLQLKDI 132 Query: 182 DS-------AEY-EGDARKKEGSFYVWTSQEIEDTLGENAELF 286 D+ A Y EGD FY W + D G N +F Sbjct: 133 DNSLAVFCLATYGEGDPTDNAMEFYEWITSGDVDLSGLNYAVF 175
>SVF1_YEAST (Q05515) Survival factor 1| Length = 481 Score = 28.5 bits (62), Expect = 9.1 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Frame = +2 Query: 128 LRRDMIGEDGEIFSAEDADSAEYE----GDARKKEGSFYVWTSQEIEDTLGENAELFKNH 295 +++++I E E S+ D D E E GD+ ++ GS S+E+E T + FK Sbjct: 197 VKKEVIPESDEEESSADEDDNEDEDEESGDSEEESGSEEESDSEEVEITYEDRTITFKEE 256 Query: 296 YYVKSSGNCDLSGMSDPH 349 S+ GM H Sbjct: 257 DPAISTFIMAFQGMKPHH 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,608,229 Number of Sequences: 219361 Number of extensions: 1281102 Number of successful extensions: 3605 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3598 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
