ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal3d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 2e-90
2ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predic... 305 1e-79
3gb|AY112109.1| Zea mays CL26172_1 mRNA sequence 272 1e-69
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
5dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
6dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
7dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
8emb|CR318644.8| Zebrafish DNA sequence from clone DKEYP-11H3 in ... 46 0.15
9gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, com... 44 0.59
10gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome... 44 0.59
11gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 44 0.59
12dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone... 44 0.59
13emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on ch... 42 2.3
14ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-indu... 42 2.3
15ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.3
16ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.3
17gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c... 40 9.3
18ref|XM_390936.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 9.3
19gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 9.3
20gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 9.3
21gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, ... 40 9.3
22gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cance... 40 9.3
23gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of... 40 9.3
24gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, comple... 40 9.3
25dbj|AB162342.1| Oncorhynchus mykiss genes, MHC class I a region,... 40 9.3
26gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, comple... 40 9.3
27gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, com... 40 9.3
28dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 9.3
29dbj|AK098498.1| Homo sapiens cDNA FLJ25632 fis, clone STM03991 40 9.3
30gb|U51003.1|HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds 40 9.3
31dbj|AP005326.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 9.3
32dbj|AP001496.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 9.3
33dbj|AB208823.1| Homo sapiens mRNA for distal-less homeo box 2 va... 40 9.3

>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full
           insert sequence
          Length = 1002

 Score =  341 bits (172), Expect = 2e-90
 Identities = 301/344 (87%)
 Strand = Plus / Plus

                                                                       
Query: 151 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210
           ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 252 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 311

                                                                       
Query: 211 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270
           || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 312 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 371

                                                                       
Query: 271 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 330
           || ||||||||||||||  ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 372 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 431

                                                                       
Query: 331 gaccagataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatg 390
           ||||||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | 
Sbjct: 432 gaccagataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagtt 491

                                                                       
Query: 391 caaaggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaa 450
           ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || 
Sbjct: 492 caaaggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgag 551

                                                       
Query: 451 gaggagaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494
            |||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 552 aaggagaaaaatgaaggtatgttcttcaaaagccttgggaaggt 595



 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 541 gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600
           |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| 
Sbjct: 645 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 704

                                                                       
Query: 601 atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660
           ||||||||||  |||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 705 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 764

             
Query: 661 cc 662
           ||
Sbjct: 765 cc 766



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>ref|NM_190643.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score =  305 bits (154), Expect = 1e-79
 Identities = 265/302 (87%)
 Strand = Plus / Plus

                                                                       
Query: 193 atgcttcagacgcagaaggtccggatcacaaacttcctggacgagcggtctgcttacctg 252
           ||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||||||||
Sbjct: 1   atgcttcaggcgcagaaggtgcgcatcacaagcttcttggacgagcgctctgcttacctg 60

                                                                       
Query: 253 accaagttcaccaaggacgccgacaccgagttcgacatgattgggcagaacgccatgaaa 312
           ||||||||  | ||||| || ||||||||||||||  ||||||| |||||||||||||||
Sbjct: 61  accaagtttgcgaaggatgcggacaccgagttcgatctgattggccagaacgccatgaaa 120

                                                                       
Query: 313 gagctcgatcaaattggggaccagataatggagcgtctcgacagcaagatgcagtcctac 372
           ||||| ||| || |||||||||||||||||||| | || ||||||||||||||| |||  
Sbjct: 121 gagcttgatgaagttggggaccagataatggagaggctggacagcaagatgcaggccttt 180

                                                                       
Query: 373 gaggagacagctgaaatgcaaaggcaggagatagaaatgaatgagagagtgttagaagac 432
           |||||||| |||||| | ||||||||||||||||||||||| ||||| ||| | ||||||
Sbjct: 181 gaggagactgctgaagttcaaaggcaggagatagaaatgaacgagagggtgcttgaagac 240

                                                                       
Query: 433 ttcgaagactggatcgaagaggagaaaaacgaaggcatgttcttcaaaagccttggcaag 492
           |||||||| ||||| ||  |||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 241 ttcgaagattggattgagaaggagaaaaatgaaggtatgttcttcaaaagccttgggaag 300

             
Query: 493 gt 494
           ||
Sbjct: 301 gt 302



 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 541 gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600
           |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| 
Sbjct: 352 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 411

                                                                       
Query: 601 atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660
           ||||||||||  |||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 412 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 471

             
Query: 661 cc 662
           ||
Sbjct: 472 cc 473



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>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence
          Length = 768

 Score =  272 bits (137), Expect = 1e-69
 Identities = 245/281 (87%)
 Strand = Plus / Minus

                                                                       
Query: 165 ccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaaggtccggatcacaaa 224
           |||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| |
Sbjct: 569 ccagcaggaggttcttgcacagatcgccatgcttcagacgcagaaggtgcgcatcacaga 510

                                                                       
Query: 225 cttcctggacgagcggtctgcttacctgaccaagttcaccaaggacgccgacaccgagtt 284
           |||| |||||||||| ||||||||||||||||||||| |||||||||||||| | |||||
Sbjct: 509 cttcttggacgagcgctctgcttacctgaccaagttcgccaaggacgccgactcggagtt 450

                                                                       
Query: 285 cgacatgattgggcagaacgccatgaaagagctcgatcaaattggggaccagataatgga 344
           |||| ||||||||||||||||||||||||| || |||    |||| ||||||||| ||||
Sbjct: 449 cgacctgattgggcagaacgccatgaaagaacttgatgccgttggtgaccagatactgga 390

                                                                       
Query: 345 gcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaaggcaggagat 404
           | | |||||||||||||||||  ||| ||||||||| |||||  | ||| |||| |||||
Sbjct: 389 gaggctcgacagcaagatgcaagccttcgaggagacggctgaggtacaacggcaagagat 330

                                                    
Query: 405 agaaatgaatgagagagtgttagaagacttcgaagactgga 445
           ||||||||| || |  |||||||| ||||||||||||||||
Sbjct: 329 agaaatgaacgataaggtgttagaggacttcgaagactgga 289



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 107/129 (82%)
 Strand = Plus / Minus

                                                                       
Query: 532 gccaagatcgaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaact 591
           |||||| | |||||||||||||||| ||||||||||||||||||||| || ||     ||
Sbjct: 205 gccaaggtggaagcacagaaggtcaaagagattgcagaggagagtgcaggatcnnnnnct 146

                                                                       
Query: 592 cggatgaatatttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtc 651
           || ||||| |||||||| |  || |||| |||||||||  ||||||| || |||||| ||
Sbjct: 145 cgtatgaacatttacctggggctgatggggatactcgggattacaattgcgaatgccatc 86

                    
Query: 652 tttgcaaca 660
           |||||||||
Sbjct: 85  tttgcaaca 77



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 471 gttcttcaaaagccttggcaaggtcaaa 498
           ||||||||||||||||||||||||||||
Sbjct: 263 gttcttcaaaagccttggcaaggtcaaa 236



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  186 bits (94), Expect = 6e-44
 Identities = 163/186 (87%)
 Strand = Plus / Minus

                                                                            
Query: 151      ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210
                ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 36730209 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 36730150

                                                                            
Query: 211      gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270
                || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 36730149 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 36730090

                                                                            
Query: 271      gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 330
                || ||||||||||||||  ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 36730089 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 36730030

                      
Query: 331      gaccag 336
                ||||||
Sbjct: 36730029 gaccag 36730024



 Score =  159 bits (80), Expect = 1e-35
 Identities = 140/160 (87%)
 Strand = Plus / Minus

                                                                            
Query: 335      agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 394
                ||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | ||||
Sbjct: 36729952 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 36729893

                                                                            
Query: 395      ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 454
                ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||  |||
Sbjct: 36729892 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 36729833

                                                        
Query: 455      agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494
                ||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 36729832 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 36729793



 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                            
Query: 541      gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600
                |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| 
Sbjct: 36729743 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 36729684

                                                                            
Query: 601      atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660
                ||||||||||  |||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 36729683 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 36729624

                  
Query: 661      cc 662
                ||
Sbjct: 36729623 cc 36729622



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>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0529E05
          Length = 134982

 Score =  186 bits (94), Expect = 6e-44
 Identities = 163/186 (87%)
 Strand = Plus / Minus

                                                                         
Query: 151   ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210
             ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 56524 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 56465

                                                                         
Query: 211   gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270
             || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 56464 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 56405

                                                                         
Query: 271   gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 330
             || ||||||||||||||  ||||||| |||||||||||||||||||| ||| || |||||
Sbjct: 56404 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 56345

                   
Query: 331   gaccag 336
             ||||||
Sbjct: 56344 gaccag 56339



 Score =  159 bits (80), Expect = 1e-35
 Identities = 140/160 (87%)
 Strand = Plus / Minus

                                                                         
Query: 335   agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 394
             ||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | ||||
Sbjct: 56267 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 56208

                                                                         
Query: 395   ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 454
             ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||  |||
Sbjct: 56207 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 56148

                                                     
Query: 455   agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494
             ||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 56147 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 56108



 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                         
Query: 541   gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600
             |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| 
Sbjct: 56058 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 55999

                                                                         
Query: 601   atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660
             ||||||||||  |||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 55998 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 55939

               
Query: 661   cc 662
             ||
Sbjct: 55938 cc 55937



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>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full
            insert sequence
          Length = 3098

 Score =  159 bits (80), Expect = 1e-35
 Identities = 140/160 (87%)
 Strand = Plus / Minus

                                                                        
Query: 335  agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 394
            ||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | ||||
Sbjct: 2482 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2423

                                                                        
Query: 395  ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 454
            ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||  |||
Sbjct: 2422 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2363

                                                    
Query: 455  agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494
            ||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 2362 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 2323



 Score =  137 bits (69), Expect = 5e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                        
Query: 151  ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210
            ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 2645 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2586

                                                                        
Query: 211  gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270
            || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 2585 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2526

                             
Query: 271  gccgacaccgagttcga 287
            || ||||||||||||||
Sbjct: 2525 gcggacaccgagttcga 2509



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 613  ctcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaacacc 662
            |||||||| |||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 2311 ctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaacacc 2262



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>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full
            insert sequence
          Length = 3051

 Score =  159 bits (80), Expect = 1e-35
 Identities = 140/160 (87%)
 Strand = Plus / Minus

                                                                        
Query: 335  agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 394
            ||||||||||| | || ||||||||||||||| |||  |||||||| |||||| | ||||
Sbjct: 2461 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2402

                                                                        
Query: 395  ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 454
            ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| ||  |||
Sbjct: 2401 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2342

                                                    
Query: 455  agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494
            ||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 2341 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 2302



 Score =  137 bits (69), Expect = 5e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                        
Query: 151  ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210
            ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||
Sbjct: 2609 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2550

                                                                        
Query: 211  gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270
            || || ||||||| |||| |||||||||| ||||||||||||||||||||  | ||||| 
Sbjct: 2549 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2490

                             
Query: 271  gccgacaccgagttcga 287
            || ||||||||||||||
Sbjct: 2489 gcggacaccgagttcga 2473



 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                        
Query: 541  gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600
            |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| 
Sbjct: 2252 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 2193

                                                                        
Query: 601  atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660
            ||||||||||  |||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 2192 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 2133

              
Query: 661  cc 662
            ||
Sbjct: 2132 cc 2131



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>emb|CR318644.8| Zebrafish DNA sequence from clone DKEYP-11H3 in linkage group 23,
             complete sequence
          Length = 92984

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 541   gaagcacagaaggtcagagagat 563
             |||||||||||||||||||||||
Sbjct: 26256 gaagcacagaaggtcagagagat 26234



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>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence
          Length = 113095

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 249   cctgaccaagttcaccaaggac 270
             ||||||||||||||||||||||
Sbjct: 38417 cctgaccaagttcaccaaggac 38396



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>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence
          Length = 194060

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 249   cctgaccaagttcaccaaggac 270
             ||||||||||||||||||||||
Sbjct: 41344 cctgaccaagttcaccaaggac 41365



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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 497     aaaaacctcaaaacaatgagga 518
               ||||||||||||||||||||||
Sbjct: 1907320 aaaaacctcaaaacaatgagga 1907299



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>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183,
             complete sequence
          Length = 70173

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 166   cagcaggaggtgcttgcaaaaa 187
             ||||||||||||||||||||||
Sbjct: 15867 cagcaggaggtgcttgcaaaaa 15888



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>emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on chromosome 22q12, complete
             sequence
          Length = 106008

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 555   cagagagattgcagaggagag 575
             |||||||||||||||||||||
Sbjct: 34508 cagagagattgcagaggagag 34488



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>ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-inducing protein
             (LOC292017), mRNA
          Length = 17592

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 551   aggtcagagagattgcagaggagag 575
             |||||| ||||||||||||||||||
Sbjct: 12677 aggtcatagagattgcagaggagag 12701



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>ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial
            mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 330  ggaccagataatggagcgtctcga 353
            |||||||||||||||| |||||||
Sbjct: 2173 ggaccagataatggagtgtctcga 2150



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>ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial
            mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 330  ggaccagataatggagcgtctcga 353
            |||||||||||||||| |||||||
Sbjct: 2173 ggaccagataatggagtgtctcga 2150



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>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tgcagtgcatcaaagcagga 88
              ||||||||||||||||||||
Sbjct: 171766 tgcagtgcatcaaagcagga 171785



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>ref|XM_390936.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10760.1)
            partial mRNA
          Length = 2469

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  caagagcagctccgaagatg 124
            ||||||||||||||||||||
Sbjct: 1996 caagagcagctccgaagatg 1977



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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    aaaaaacctcaaaacaatga 515
              ||||||||||||||||||||
Sbjct: 126929 aaaaaacctcaaaacaatga 126948



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 150     cggcggtgaccaacgccagcagga 173
               |||||||||||| |||||||||||
Sbjct: 2704598 cggcggtgaccagcgccagcagga 2704621



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>gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, RP23-127B9, complete
              sequence
          Length = 201643

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     cagtgcatcaaagcaggaggagat 94
              ||||| ||||||||||||||||||
Sbjct: 117112 cagtgaatcaaagcaggaggagat 117135



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>gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184696

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    aaagccttggcaaggtcaaa 498
              ||||||||||||||||||||
Sbjct: 155140 aaagccttggcaaggtcaaa 155159



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>gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of the complete genome
          Length = 13785

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 252  gaccaagttcaccaaggacgccga 275
            ||||||||||| ||||||||||||
Sbjct: 4339 gaccaagttcagcaaggacgccga 4362



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>gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, complete sequence
          Length = 67392

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   gccagcaggaggtgcttgcaaaaa 187
             ||||||||| ||||||||||||||
Sbjct: 59334 gccagcaggtggtgcttgcaaaaa 59357



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>dbj|AB162342.1| Oncorhynchus mykiss genes, MHC class I a region, complete and partial
             cds
          Length = 103035

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   tcaaaagccttggcaaggtc 495
             ||||||||||||||||||||
Sbjct: 28871 tcaaaagccttggcaaggtc 28890



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>gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, complete sequence
          Length = 132644

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 446  tcgaagaggagaaaaacgaaggca 469
            |||||||||||||||| |||||||
Sbjct: 6519 tcgaagaggagaaaaaagaaggca 6542



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>gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, complete sequence
          Length = 168538

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 37     ccctcgccgcgcagatcctccccgcgcc 64
              ||||| ||||||||| ||||||||||||
Sbjct: 138979 ccctccccgcgcagaccctccccgcgcc 139006



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 521     tcaaggtgaaggccaagatc 540
               ||||||||||||||||||||
Sbjct: 6367477 tcaaggtgaaggccaagatc 6367496



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>dbj|AK098498.1| Homo sapiens cDNA FLJ25632 fis, clone STM03991
          Length = 3425

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 541  gaagcacagaaggtcagagagatt 564
            |||| |||||||||||||||||||
Sbjct: 2827 gaaggacagaaggtcagagagatt 2850



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>gb|U51003.1|HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 446  tcgaagaggagaaaaacgaaggca 469
            |||||||||||||||| |||||||
Sbjct: 2515 tcgaagaggagaaaaaagaaggca 2492



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>dbj|AP005326.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-147K23, complete
             sequence
          Length = 65302

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 541   gaagcacagaaggtcagagagatt 564
             |||| |||||||||||||||||||
Sbjct: 42678 gaaggacagaaggtcagagagatt 42655



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>dbj|AP001496.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-835E18, complete
              sequence
          Length = 179358

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 541    gaagcacagaaggtcagagagatt 564
              |||| |||||||||||||||||||
Sbjct: 145173 gaaggacagaaggtcagagagatt 145150



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>dbj|AB208823.1| Homo sapiens mRNA for distal-less homeo box 2 variant protein
          Length = 3163

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 446  tcgaagaggagaaaaacgaaggca 469
            |||||||||||||||| |||||||
Sbjct: 1604 tcgaagaggagaaaaaagaaggca 1581


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,596,252
Number of Sequences: 3902068
Number of extensions: 5596252
Number of successful extensions: 124200
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123985
Number of HSP's gapped (non-prelim): 213
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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