| Clone Name | baal3d01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full insert sequence Length = 1002 Score = 341 bits (172), Expect = 2e-90 Identities = 301/344 (87%) Strand = Plus / Plus Query: 151 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 252 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 311 Query: 211 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 312 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 371 Query: 271 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 330 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 372 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 431 Query: 331 gaccagataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatg 390 ||||||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | Sbjct: 432 gaccagataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagtt 491 Query: 391 caaaggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaa 450 ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || Sbjct: 492 caaaggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgag 551 Query: 451 gaggagaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494 |||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 552 aaggagaaaaatgaaggtatgttcttcaaaagccttgggaaggt 595 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Plus Query: 541 gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600 |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| Sbjct: 645 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 704 Query: 601 atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660 |||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||| Sbjct: 705 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 764 Query: 661 cc 662 || Sbjct: 765 cc 766
>ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 597 Score = 305 bits (154), Expect = 1e-79 Identities = 265/302 (87%) Strand = Plus / Plus Query: 193 atgcttcagacgcagaaggtccggatcacaaacttcctggacgagcggtctgcttacctg 252 ||||||||| |||||||||| || ||||||| |||| |||||||||| |||||||||||| Sbjct: 1 atgcttcaggcgcagaaggtgcgcatcacaagcttcttggacgagcgctctgcttacctg 60 Query: 253 accaagttcaccaaggacgccgacaccgagttcgacatgattgggcagaacgccatgaaa 312 |||||||| | ||||| || |||||||||||||| ||||||| ||||||||||||||| Sbjct: 61 accaagtttgcgaaggatgcggacaccgagttcgatctgattggccagaacgccatgaaa 120 Query: 313 gagctcgatcaaattggggaccagataatggagcgtctcgacagcaagatgcagtcctac 372 ||||| ||| || |||||||||||||||||||| | || ||||||||||||||| ||| Sbjct: 121 gagcttgatgaagttggggaccagataatggagaggctggacagcaagatgcaggccttt 180 Query: 373 gaggagacagctgaaatgcaaaggcaggagatagaaatgaatgagagagtgttagaagac 432 |||||||| |||||| | ||||||||||||||||||||||| ||||| ||| | |||||| Sbjct: 181 gaggagactgctgaagttcaaaggcaggagatagaaatgaacgagagggtgcttgaagac 240 Query: 433 ttcgaagactggatcgaagaggagaaaaacgaaggcatgttcttcaaaagccttggcaag 492 |||||||| ||||| || |||||||||| ||||| |||||||||||||||||||| ||| Sbjct: 241 ttcgaagattggattgagaaggagaaaaatgaaggtatgttcttcaaaagccttgggaag 300 Query: 493 gt 494 || Sbjct: 301 gt 302 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Plus Query: 541 gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600 |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| Sbjct: 352 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 411 Query: 601 atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660 |||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||| Sbjct: 412 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 471 Query: 661 cc 662 || Sbjct: 472 cc 473
>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence Length = 768 Score = 272 bits (137), Expect = 1e-69 Identities = 245/281 (87%) Strand = Plus / Minus Query: 165 ccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaaggtccggatcacaaa 224 |||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| | Sbjct: 569 ccagcaggaggttcttgcacagatcgccatgcttcagacgcagaaggtgcgcatcacaga 510 Query: 225 cttcctggacgagcggtctgcttacctgaccaagttcaccaaggacgccgacaccgagtt 284 |||| |||||||||| ||||||||||||||||||||| |||||||||||||| | ||||| Sbjct: 509 cttcttggacgagcgctctgcttacctgaccaagttcgccaaggacgccgactcggagtt 450 Query: 285 cgacatgattgggcagaacgccatgaaagagctcgatcaaattggggaccagataatgga 344 |||| ||||||||||||||||||||||||| || ||| |||| ||||||||| |||| Sbjct: 449 cgacctgattgggcagaacgccatgaaagaacttgatgccgttggtgaccagatactgga 390 Query: 345 gcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaaggcaggagat 404 | | ||||||||||||||||| ||| ||||||||| ||||| | ||| |||| ||||| Sbjct: 389 gaggctcgacagcaagatgcaagccttcgaggagacggctgaggtacaacggcaagagat 330 Query: 405 agaaatgaatgagagagtgttagaagacttcgaagactgga 445 ||||||||| || | |||||||| |||||||||||||||| Sbjct: 329 agaaatgaacgataaggtgttagaggacttcgaagactgga 289 Score = 91.7 bits (46), Expect = 3e-15 Identities = 107/129 (82%) Strand = Plus / Minus Query: 532 gccaagatcgaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaact 591 |||||| | |||||||||||||||| ||||||||||||||||||||| || || || Sbjct: 205 gccaaggtggaagcacagaaggtcaaagagattgcagaggagagtgcaggatcnnnnnct 146 Query: 592 cggatgaatatttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtc 651 || ||||| |||||||| | || |||| ||||||||| ||||||| || |||||| || Sbjct: 145 cgtatgaacatttacctggggctgatggggatactcgggattacaattgcgaatgccatc 86 Query: 652 tttgcaaca 660 ||||||||| Sbjct: 85 tttgcaaca 77 Score = 56.0 bits (28), Expect = 2e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 471 gttcttcaaaagccttggcaaggtcaaa 498 |||||||||||||||||||||||||||| Sbjct: 263 gttcttcaaaagccttggcaaggtcaaa 236
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 186 bits (94), Expect = 6e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 151 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 36730209 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 36730150 Query: 211 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 36730149 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 36730090 Query: 271 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 330 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 36730089 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 36730030 Query: 331 gaccag 336 |||||| Sbjct: 36730029 gaccag 36730024 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 335 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 394 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 36729952 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 36729893 Query: 395 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 454 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 36729892 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 36729833 Query: 455 agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 36729832 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 36729793 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Minus Query: 541 gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600 |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| Sbjct: 36729743 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 36729684 Query: 601 atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660 |||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||| Sbjct: 36729683 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 36729624 Query: 661 cc 662 || Sbjct: 36729623 cc 36729622
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 186 bits (94), Expect = 6e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 151 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 56524 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 56465 Query: 211 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 56464 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 56405 Query: 271 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 330 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 56404 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 56345 Query: 331 gaccag 336 |||||| Sbjct: 56344 gaccag 56339 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 335 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 394 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 56267 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 56208 Query: 395 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 454 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 56207 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 56148 Query: 455 agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 56147 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 56108 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Minus Query: 541 gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600 |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| Sbjct: 56058 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 55999 Query: 601 atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660 |||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||| Sbjct: 55998 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 55939 Query: 661 cc 662 || Sbjct: 55938 cc 55937
>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full insert sequence Length = 3098 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 335 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 394 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 2482 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2423 Query: 395 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 454 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 2422 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2363 Query: 455 agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 2362 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 2323 Score = 137 bits (69), Expect = 5e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 151 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 2645 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2586 Query: 211 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 2585 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2526 Query: 271 gccgacaccgagttcga 287 || |||||||||||||| Sbjct: 2525 gcggacaccgagttcga 2509 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 613 ctcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaacacc 662 |||||||| |||||||| |||||||| |||||||||||||| |||||||| Sbjct: 2311 ctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaacacc 2262
>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full insert sequence Length = 3051 Score = 159 bits (80), Expect = 1e-35 Identities = 140/160 (87%) Strand = Plus / Minus Query: 335 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 394 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 2461 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2402 Query: 395 ggcaggagatagaaatgaatgagagagtgttagaagacttcgaagactggatcgaagagg 454 ||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| || ||| Sbjct: 2401 ggcaggagatagaaatgaacgagagggtgcttgaagacttcgaagattggattgagaagg 2342 Query: 455 agaaaaacgaaggcatgttcttcaaaagccttggcaaggt 494 ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 2341 agaaaaatgaaggtatgttcttcaaaagccttgggaaggt 2302 Score = 137 bits (69), Expect = 5e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 151 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 210 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 2609 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2550 Query: 211 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 270 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 2549 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2490 Query: 271 gccgacaccgagttcga 287 || |||||||||||||| Sbjct: 2489 gcggacaccgagttcga 2473 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Minus Query: 541 gaagcacagaaggtcagagagattgcagaggagagtgcggggtcaaaaactcggatgaat 600 |||||||| ||||||| ||| |||||| | || ||||| || ||||||||| ||||||| Sbjct: 2252 gaagcacaaaaggtcaaagatattgcaaaagaaagtgcaggatcaaaaactaggatgaac 2193 Query: 601 atttaccttgcactcatggcgatactcggtcttacaatcgcaaatgccgtctttgcaaca 660 |||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||| Sbjct: 2192 atttaccttgggctcatggcaatactcgggcttacaattgcaaatgccgtcttcgcaaca 2133 Query: 661 cc 662 || Sbjct: 2132 cc 2131
>emb|CR318644.8| Zebrafish DNA sequence from clone DKEYP-11H3 in linkage group 23, complete sequence Length = 92984 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 541 gaagcacagaaggtcagagagat 563 ||||||||||||||||||||||| Sbjct: 26256 gaagcacagaaggtcagagagat 26234
>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence Length = 113095 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 249 cctgaccaagttcaccaaggac 270 |||||||||||||||||||||| Sbjct: 38417 cctgaccaagttcaccaaggac 38396
>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence Length = 194060 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 249 cctgaccaagttcaccaaggac 270 |||||||||||||||||||||| Sbjct: 41344 cctgaccaagttcaccaaggac 41365
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 497 aaaaacctcaaaacaatgagga 518 |||||||||||||||||||||| Sbjct: 1907320 aaaaacctcaaaacaatgagga 1907299
>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183, complete sequence Length = 70173 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 cagcaggaggtgcttgcaaaaa 187 |||||||||||||||||||||| Sbjct: 15867 cagcaggaggtgcttgcaaaaa 15888
>emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on chromosome 22q12, complete sequence Length = 106008 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 555 cagagagattgcagaggagag 575 ||||||||||||||||||||| Sbjct: 34508 cagagagattgcagaggagag 34488
>ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-inducing protein (LOC292017), mRNA Length = 17592 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 aggtcagagagattgcagaggagag 575 |||||| |||||||||||||||||| Sbjct: 12677 aggtcatagagattgcagaggagag 12701
>ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial mRNA Length = 3714 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 ggaccagataatggagcgtctcga 353 |||||||||||||||| ||||||| Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial mRNA Length = 3714 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 ggaccagataatggagcgtctcga 353 |||||||||||||||| ||||||| Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence Length = 183075 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tgcagtgcatcaaagcagga 88 |||||||||||||||||||| Sbjct: 171766 tgcagtgcatcaaagcagga 171785
>ref|XM_390936.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10760.1) partial mRNA Length = 2469 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 caagagcagctccgaagatg 124 |||||||||||||||||||| Sbjct: 1996 caagagcagctccgaagatg 1977
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 aaaaaacctcaaaacaatga 515 |||||||||||||||||||| Sbjct: 126929 aaaaaacctcaaaacaatga 126948
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 cggcggtgaccaacgccagcagga 173 |||||||||||| ||||||||||| Sbjct: 2704598 cggcggtgaccagcgccagcagga 2704621
>gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, RP23-127B9, complete sequence Length = 201643 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 cagtgcatcaaagcaggaggagat 94 ||||| |||||||||||||||||| Sbjct: 117112 cagtgaatcaaagcaggaggagat 117135
>gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184696 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 aaagccttggcaaggtcaaa 498 |||||||||||||||||||| Sbjct: 155140 aaagccttggcaaggtcaaa 155159
>gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of the complete genome Length = 13785 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 gaccaagttcaccaaggacgccga 275 ||||||||||| |||||||||||| Sbjct: 4339 gaccaagttcagcaaggacgccga 4362
>gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, complete sequence Length = 67392 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 gccagcaggaggtgcttgcaaaaa 187 ||||||||| |||||||||||||| Sbjct: 59334 gccagcaggtggtgcttgcaaaaa 59357
>dbj|AB162342.1| Oncorhynchus mykiss genes, MHC class I a region, complete and partial cds Length = 103035 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcaaaagccttggcaaggtc 495 |||||||||||||||||||| Sbjct: 28871 tcaaaagccttggcaaggtc 28890
>gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, complete sequence Length = 132644 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 tcgaagaggagaaaaacgaaggca 469 |||||||||||||||| ||||||| Sbjct: 6519 tcgaagaggagaaaaaagaaggca 6542
>gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, complete sequence Length = 168538 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 ccctcgccgcgcagatcctccccgcgcc 64 ||||| ||||||||| |||||||||||| Sbjct: 138979 ccctccccgcgcagaccctccccgcgcc 139006
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 tcaaggtgaaggccaagatc 540 |||||||||||||||||||| Sbjct: 6367477 tcaaggtgaaggccaagatc 6367496
>dbj|AK098498.1| Homo sapiens cDNA FLJ25632 fis, clone STM03991 Length = 3425 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 541 gaagcacagaaggtcagagagatt 564 |||| ||||||||||||||||||| Sbjct: 2827 gaaggacagaaggtcagagagatt 2850
>gb|U51003.1|HSU51003 Homo sapiens DLX-2 (DLX-2) gene, complete cds Length = 3202 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 tcgaagaggagaaaaacgaaggca 469 |||||||||||||||| ||||||| Sbjct: 2515 tcgaagaggagaaaaaagaaggca 2492
>dbj|AP005326.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-147K23, complete sequence Length = 65302 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 541 gaagcacagaaggtcagagagatt 564 |||| ||||||||||||||||||| Sbjct: 42678 gaaggacagaaggtcagagagatt 42655
>dbj|AP001496.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-835E18, complete sequence Length = 179358 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 541 gaagcacagaaggtcagagagatt 564 |||| ||||||||||||||||||| Sbjct: 145173 gaaggacagaaggtcagagagatt 145150
>dbj|AB208823.1| Homo sapiens mRNA for distal-less homeo box 2 variant protein Length = 3163 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 tcgaagaggagaaaaacgaaggca 469 |||||||||||||||| ||||||| Sbjct: 1604 tcgaagaggagaaaaaagaaggca 1581 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,596,252 Number of Sequences: 3902068 Number of extensions: 5596252 Number of successful extensions: 124200 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123985 Number of HSP's gapped (non-prelim): 213 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)