ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2n23 |
|---|---|
| Clone Library Name | barley_pub |
>MTRD_METTM (P80183) Tetrahydromethanopterin S-methyltransferase subunit D (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit D) Length = 233 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +1 Query: 100 AMATHTGVAASKVLILVGAGLTGSI 174 AMAT TGV ++ GAGLTG I Sbjct: 32 AMATATGVGTGTAMLAAGAGLTGLI 56
>MTRD_METTH (O27230) Tetrahydromethanopterin S-methyltransferase subunit D (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit D) Length = 233 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +1 Query: 100 AMATHTGVAASKVLILVGAGLTGSI 174 AMAT TGV ++ GAGLTG I Sbjct: 32 AMATATGVGTGTAMLAAGAGLTGLI 56
>CARB_PSEPK (Q88DU6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1073 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -1 Query: 273 SHVIGARTFSLIYALHELLELRQYIRQAAIPKHDRP 166 S+V+G R ++Y EL EL++Y+R+A +D P Sbjct: 716 SYVLGGRAMEIVY---ELDELKRYLREAVQVSNDSP 748
>Y4XP_RHISN (P55708) Putative cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) Length = 336 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = +1 Query: 85 RRKGMAMATHTGVAASKVLILVGAG-LTGSIV 177 RRKG+ + TG A K L +GAG LTG++V Sbjct: 260 RRKGLLVGGSTGGAIYKALEFIGAGKLTGTVV 291
>VIT_BOMMO (Q27309) Vitellogenin precursor [Contains: Vitellin light chain| (VL); Vitellin light chain rare isoform; Vitellin heavy chain rare isoform; Vitellin heavy chain (VH)] Length = 1782 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = +3 Query: 171 DRASEWPPVGCIGGAPGAHEGRKSRRRFERL*HGSYPSSDSAFSPRSQRFNFVKAHYH 344 D +EWP G + A +++ + Y SS S+ S S FNF + H H Sbjct: 304 DSGAEWPRAGAMRPAQSILYSLSTKQMTKH-----YESSSSSSSSESHEFNFPEQHEH 356
>MYO1_SCHPO (Q9Y7Z8) Myosin-1| Length = 1217 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = +3 Query: 267 HGSYPSSDSAFSPRSQRFNFVKAHYHIEWQIGLRRWFIVLHTASSCSWSI 416 H ++DSAF+ QR NF+ ++ H E + + FIV H A ++SI Sbjct: 496 HADSAAADSAFA---QRLNFLSSNPHFEQR---QNQFIVKHYAGDVTYSI 539
>VTFP_BPT7 (P03748) Tail fiber protein| Length = 553 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 Query: 259 AYDMALIQAQIRHLAQEVRDLT 324 AYD+ + Q Q H+A+E RDLT Sbjct: 96 AYDLNVAQIQTMHVAEEARDLT 117
>DXR_CORGL (Q8NP10) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 392 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = +1 Query: 118 GVAASKVLILVGAGLTGSIVLRNGRLSDVLAELQELMKGVNQGEGSSAYDMALIQAQIRH 297 GV K+LIL G G+ L DV+A+ + + V G S D+ + QAQ Sbjct: 2 GVVTKKILILGSTGSIGTQAL------DVIADNSDKFEVVGIAAGGSQPDLVISQAQQLG 55 Query: 298 LAQE 309 LA + Sbjct: 56 LAAD 59
>VTFP_BPT3 (P10308) Tail fiber protein| Length = 557 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 Query: 259 AYDMALIQAQIRHLAQEVRDLT 324 AYD+ + Q Q H+A+E RDLT Sbjct: 96 AYDLNVAQIQTMHVAEEARDLT 117
>DRE2D_ARATH (Q9LQZ2) Putative dehydration-responsive element-binding protein 2D| (DREB2D protein) Length = 206 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = +3 Query: 168 VDRASEWPPVGCIGGAPGAHEGRKSRRRFERL*HGSYPSSDSAFSP 305 +D +S W G P HEG RF+ G Y + DS SP Sbjct: 160 MDDSSIWEEATMSLGFPWVHEGDNDISRFDTCISGGYSNWDSFHSP 205
>VATA_SULTO (Q971B7) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type| ATPase subunit A) (Sul-ATPase alpha chain) Length = 591 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/39 (28%), Positives = 20/39 (51%) Frame = -2 Query: 191 RPFRSTIDPVRPAPTRMRTLEAATPVCVAIAMPLRRPYG 75 RP++ ++PV P T +R L+ P+ + P+G Sbjct: 198 RPYKEKLEPVEPLLTGIRVLDTVFPIAKGGTAAIPGPFG 236
>PIV6_ADE40 (P48309) Minor capsid protein 6 precursor (Minor capsid protein VI)| [Contains: Protease cofactor] Length = 267 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -2 Query: 233 PFMSSWSSANTSDRRPFRSTIDPVRPAPTRMRTLEAATPVCVAIAMPLRRPYG 75 P S T + P T+ P+ PAPT + T VA+A P RRP G Sbjct: 192 PVYGKESKPVTLELPPPVPTVPPM-PAPTLGTAVSRPTAPTVAVATPARRPRG 243
>VATA_PYRAE (Q8ZYR1) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type| ATPase subunit A) Length = 593 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -2 Query: 191 RPFRSTIDPVRPAPTRMRTLEAATPVCVAIAMPLRRPYG 75 RPF+ + PV P T +RT++ P+ + P+G Sbjct: 201 RPFKEKLPPVEPLITGVRTVDTMFPIAKGGTAAVPGPFG 239
>VATA_METBA (P22662) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type| ATPase subunit A) Length = 578 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -2 Query: 191 RPFRSTIDPVRPAPTRMRTLEAATPVCVAIAMPLRRPYG 75 RP ++ + P RP T MR L+ PV + P+G Sbjct: 193 RPVKAKLTPTRPLVTGMRILDGLFPVAKGGTAAIPGPFG 231
>CEP63_HUMAN (Q96MT8) Centrosomal protein of 63 kDa (Cep63 protein)| Length = 703 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Frame = +1 Query: 208 AELQELMKGVNQGEGSSAYDMALIQAQIRHLAQEV--RDLTLS 330 AE+++L + + QGE S + + ++ +I HL QE+ RD+T++ Sbjct: 390 AEIKKLKEQILQGEQSYSSALEGMKMEISHLTQELHQRDITIA 432
>CARB2_AQUAE (O67233) Carbamoyl-phosphate synthase large chain, C-terminal| section (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain) Length = 537 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 273 SHVIGARTFSLIYALHELLELRQYIRQAAIPKHDRP 166 S+V+G R ++Y + EL++Y+ +A H+RP Sbjct: 160 SYVLGGRAMRIVY---DEEELKEYLEEAVSVSHERP 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,237,462 Number of Sequences: 219361 Number of extensions: 1061843 Number of successful extensions: 3428 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3427 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
