ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2n23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence Length = 1415 Score = 341 bits (172), Expect = 1e-90 Identities = 316/364 (86%) Strand = Plus / Plus Query: 102 gatggcgacgcacacgggggtcgccgcctccaaggtcctcatcctcgtcggcgcaggcct 161 |||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| | Sbjct: 150 gatggcgatgcagacggggttcgccacctccaaggtcctcatcctcgtcggcgcagggtt 209 Query: 162 gacggggtcgatcgtgcttcggaatggccgcctgtcggatgtattggcggagctccagga 221 |||| | ||||||||||| ||||||||||| || || || || ||||||||||| ||||| Sbjct: 210 gacgagctcgatcgtgctgcggaatggccggctatctgacgtgttggcggagcttcagga 269 Query: 222 gctcatgaagggcgtaaatcaaggagaaggttcgagcgcctatgacatggctcttatcca 281 ||| ||||| || ||||| ||||||||||||||||| ||||||||||| || ||| | || Sbjct: 270 gcttatgaaaggtgtaaaccaaggagaaggttcgagtgcctatgacatcgcccttcttca 329 Query: 282 agctcagattcggcatttagcccaagaagtcagagatttaactttgtcaaagcccattac 341 | |||||||||| ||||||| |||||||| |||||||| ||| | |||| ||| ||||| Sbjct: 330 atctcagattcgaaatttagcacaagaagttagagatttgactatatcaaggcctattac 389 Query: 342 catattgagtggcaaatcggactccggaggtggtttatcgtcctacatactgccagcagc 401 ||||||||||||||| || ||||| ||||| ||||||| |||||||||||||| ||||| Sbjct: 390 catattgagtggcaactccgactctggaggcagtttatcctcctacatactgcctgcagc 449 Query: 402 tgcagttggagcattaggttattgctatatgtggtgtaagggatggtccttctcagatgt 461 ||||||||||||| | ||||| |||||||||||||| ||||||| |||||| || ||||| Sbjct: 450 tgcagttggagcaatgggttactgctatatgtggtggaagggattgtccttatcggatgt 509 Query: 462 catg 465 |||| Sbjct: 510 catg 513
>gb|AY104267.1| Zea mays PCO085704 mRNA sequence Length = 1009 Score = 331 bits (167), Expect = 1e-87 Identities = 314/363 (86%) Strand = Plus / Plus Query: 103 atggcgacgcacacgggggtcgccgcctccaaggtcctcatcctcgtcggcgcaggcctg 162 ||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||| || Sbjct: 138 atggcgatgcagacgggggtcgcgacctccaaggtcctcatcctcgtcggtgcagggatg 197 Query: 163 acggggtcgatcgtgcttcggaatggccgcctgtcggatgtattggcggagctccaggag 222 ||||| |||||| |||| |||||||||||| | || ||||| |||| || ||||||||| Sbjct: 198 acgggctcgatcctgctgcggaatggccgcttatctgatgtgttgggagaactccaggag 257 Query: 223 ctcatgaagggcgtaaatcaaggagaaggttcgagcgcctatgacatggctcttatccaa 282 | |||||||| |||||||||||| | |||| | |||||||||| || ||||| ||| Sbjct: 258 attatgaagggtgtaaatcaaggaactgcttcgggtccctatgacattgcacttattcaa 317 Query: 283 gctcagattcggcatttagcccaagaagtcagagatttaactttgtcaaagcccattacc 342 |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 318 gctcagattcggaatttagcccaagaagtcagagatttgacattgtcaaagcccattacc 377 Query: 343 atattgagtggcaaatcggactccggaggtggtttatcgtcctacatactgccagcagct 402 ||| ||| ||||||||| ||||| ||||| ||||||| |||||||||||||||||||| Sbjct: 378 atactgaatggcaaatctgactcgggaggcagtttatcatcctacatactgccagcagca 437 Query: 403 gcagttggagcattaggttattgctatatgtggtgtaagggatggtccttctcagatgtc 462 |||||||||||| | ||||||||||| |||||||| ||||| | ||| ||||||||||| Sbjct: 438 gcagttggagcaatgggttattgctacatgtggtggaaggggttgtctctctcagatgtc 497 Query: 463 atg 465 ||| Sbjct: 498 atg 500
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 374 gtttatcgtcctacatactgccagcagctgcagttggagcattaggttattgctatatgt 433 ||||||| |||||||||||||| |||||||||||||||||| | ||||| |||||||||| Sbjct: 51911 gtttatcctcctacatactgcctgcagctgcagttggagcaatgggttactgctatatgt 51970 Query: 434 ggtgtaagg 442 |||| |||| Sbjct: 51971 ggtggaagg 51979 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 102 gatggcgacgcacacgggggtcgccgcctccaaggtcctcatcctcgtcggcgcagg 158 |||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 50463 gatggcgatgcagacggggttcgccacctccaaggtcctcatcctcgtcggcgcagg 50519 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 286 cagattcggcatttagcccaagaagtcagagatttaactttgtcaaagcccattaccata 345 |||||||| ||||||| |||||||| |||||||| ||| | |||| ||| ||||||||| Sbjct: 51343 cagattcgaaatttagcacaagaagttagagatttgactatatcaaggcctattaccata 51402 Query: 346 ttgagtggcaaatcggactccggaggt 372 ||||||||||| || ||||| |||||| Sbjct: 51403 ttgagtggcaactccgactctggaggt 51429 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 218 aggagctcatgaagggcgtaaatcaaggagaaggttcgagcgcctatgacat 269 ||||||| ||||| || ||||| ||||||||||||||||| ||||||||||| Sbjct: 51130 aggagcttatgaaaggtgtaaaccaaggagaaggttcgagtgcctatgacat 51181 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Plus Query: 169 tcgatcgtgcttcggaatggccgcctgtcggatgtattggcggagctccagg 220 ||||||||||| ||||||||||| || || || || ||||||||||| |||| Sbjct: 50673 tcgatcgtgctgcggaatggccggctatctgacgtgttggcggagcttcagg 50724
>gb|AY023245.1| Oryza sativa microsatellite MRG5570 containing (GGA)X8, closest to marker C67A, genomic sequence Length = 224 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 102 gatggcgacgcacacgggggtcgccgcctccaaggtcctcatcctcgtcggcgcagg 158 |||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 203 gatggcgatgcagacggggttcgccacctccaaggtcctcatcctcgtcggcgcagg 147
>gb|AC122202.4| Mus musculus BAC clone RP23-68P6 from 19, complete sequence Length = 234448 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cagaagcgagcgagagagagag 74 |||||||||||||||||||||| Sbjct: 62680 cagaagcgagcgagagagagag 62659
>ref|NM_054043.2| Mus musculus Musashi homolog 2 (Drosophila) (Msi2), mRNA Length = 6412 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ccccgcctcctccccccgccc 22 ||||||||||||||||||||| Sbjct: 38 ccccgcctcctccccccgccc 18
>gb|BC007632.1| Homo sapiens RIMS binding protein 2, mRNA (cDNA clone MGC:15831 IMAGE:3507574), complete cds Length = 3902 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cagcagctgcagttggagcat 415 ||||||||||||||||||||| Sbjct: 436 cagcagctgcagttggagcat 456
>ref|NM_015347.3| Homo sapiens RIMS binding protein 2 (RIMBP2), mRNA Length = 6322 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cagcagctgcagttggagcat 415 ||||||||||||||||||||| Sbjct: 189 cagcagctgcagttggagcat 209
>gb|AE012064.1| Xanthomonas axonopodis pv. citri str. 306, section 442 of 469 of the complete genome Length = 10412 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ggcggcgcaagggcatggcga 103 ||||||||||||||||||||| Sbjct: 9929 ggcggcgcaagggcatggcga 9909
>dbj|AK156439.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830021O13 product:RNA-binding protein Musashi2-L homolog [Mus musculus], full insert sequence Length = 2846 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ccccgcctcctccccccgccc 22 ||||||||||||||||||||| Sbjct: 24 ccccgcctcctccccccgccc 4
>dbj|AK049688.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530025P12 product:Musashi homolog 2 (Drosophila), full insert sequence Length = 4129 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ccccgcctcctccccccgccc 22 ||||||||||||||||||||| Sbjct: 38 ccccgcctcctccccccgccc 18
>dbj|AK049637.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530010I15 product:Musashi homolog 2 (Drosophila), full insert sequence Length = 4129 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ccccgcctcctccccccgccc 22 ||||||||||||||||||||| Sbjct: 38 ccccgcctcctccccccgccc 18
>tpg|BK001483.1| TPA: TPA_exp: Mus musculus RNA-binding protein (Msi2h) mRNA, complete cds Length = 6412 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ccccgcctcctccccccgccc 22 ||||||||||||||||||||| Sbjct: 38 ccccgcctcctccccccgccc 18
>gb|AC063926.36| Homo sapiens 12 BAC RP11-117L5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192774 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cagcagctgcagttggagcat 415 ||||||||||||||||||||| Sbjct: 96422 cagcagctgcagttggagcat 96442
>emb|AL645601.13| Mouse DNA sequence from clone RP23-393B19 on chromosome 11 Contains two novel genes, the 5' end of the Msi2h gene for Musashi homolog 2 (Drosophila) and a CpG island, complete sequence Length = 206389 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ccccgcctcctccccccgccc 22 ||||||||||||||||||||| Sbjct: 117249 ccccgcctcctccccccgccc 117269
>dbj|AB002316.1| Human mRNA for KIAA0318 gene, partial cds Length = 6322 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cagcagctgcagttggagcat 415 ||||||||||||||||||||| Sbjct: 189 cagcagctgcagttggagcat 209
>ref|NM_015898.2| Homo sapiens zinc finger and BTB domain containing 7A (ZBTB7A), mRNA Length = 4456 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aagcgagcgagagagagagc 75 |||||||||||||||||||| Sbjct: 3225 aagcgagcgagagagagagc 3244
>ref|NM_126328.2| Arabidopsis thaliana unknown protein AT2G02730 transcript variant AT2G02730.1 mRNA, complete cds Length = 1514 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 ggagcattaggttattgctatatgtggt 436 ||||||||||| ||| |||||||||||| Sbjct: 392 ggagcattaggctatggctatatgtggt 419
>ref|NM_201673.1| Arabidopsis thaliana unknown protein AT2G02730 transcript variant AT2G02730.2 mRNA, complete cds Length = 1292 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 ggagcattaggttattgctatatgtggt 436 ||||||||||| ||| |||||||||||| Sbjct: 395 ggagcattaggctatggctatatgtggt 422
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gtcggcgcaggcctgacggg 167 |||||||||||||||||||| Sbjct: 3333828 gtcggcgcaggcctgacggg 3333847
>gb|AC120888.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0485F09, complete sequence Length = 161276 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttctagaaccttccagaagc 59 |||||||||||||||||||| Sbjct: 14436 ttctagaaccttccagaagc 14455
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gaagcgagcgagagagagag 74 |||||||||||||||||||| Sbjct: 25790185 gaagcgagcgagagagagag 25790166
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gaagcgagcgagagagagag 74 |||||||||||||||||||| Sbjct: 54711 gaagcgagcgagagagagag 54730
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029P13, complete sequence Length = 158506 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttctagaaccttccagaagc 59 |||||||||||||||||||| Sbjct: 134558 ttctagaaccttccagaagc 134577
>emb|BX927112.16| Zebrafish DNA sequence from clone DKEY-109M11 in linkage group 1, complete sequence Length = 131888 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gaagcgagcgagagagagag 74 |||||||||||||||||||| Sbjct: 84408 gaagcgagcgagagagagag 84389
>ref|XM_381375.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein (FG01199.1) partial mRNA Length = 2070 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gagctccaggagctcatgaagggc 234 |||||||||||| ||||||||||| Sbjct: 958 gagctccaggagatcatgaagggc 981
>emb|Z77664.1|CEF53H10 Caenorhabditis elegans Cosmid F53H10, complete sequence Length = 22916 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 tcagagatttaactttgtcaaagc 334 |||||||||||||||| ||||||| Sbjct: 5252 tcagagatttaactttttcaaagc 5275
>gb|AC127696.4| Mus musculus BAC clone RP23-459J11 from chromosome 7, complete sequence Length = 168580 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tcagagatttaactttgtca 330 |||||||||||||||||||| Sbjct: 157558 tcagagatttaactttgtca 157577
>ref|NM_007375.3| Homo sapiens TAR DNA binding protein (TARDBP), mRNA Length = 4236 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccgcctcctccccccgccca 23 |||||||||||||||||||| Sbjct: 22 ccgcctcctccccccgccca 3
>emb|AL109811.40|HSJ635E18 Human DNA sequence from clone RP4-635E18 on chromosome 1p36.11-36.31 Contains the TARDBP gene for TAR DNA binding protein, the MASP2 gene for mannan-binding lectin serine protease 2, the SRM gene for spermidine synthase, the PMSCL2 gene for 100kDa polymyositis/scleroderma autoantigen 2 (FLJ41371, FLJ36636, two novel genes (FLJ30609), the 3' end of the FRAP1 gene for FK506 binding protein 12-rapamycin associated protein 1 and a CpG island, complete sequence Length = 112769 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccgcctcctccccccgccca 23 |||||||||||||||||||| Sbjct: 8991 ccgcctcctccccccgccca 8972
>emb|AL662975.3|OSJN00180 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071G03, complete sequence Length = 135169 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gcgagcgagagagagagccc 77 |||||||||||||||||||| Sbjct: 40305 gcgagcgagagagagagccc 40286
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 caagggcatggcgatggcga 109 |||||||||||||||||||| Sbjct: 630581 caagggcatggcgatggcga 630562
>tpg|BK005224.1| TPA: TPA_inf: Gibberella zeae glutamine:fructose-6-phosphate amidotransferase gene, complete cds Length = 2637 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gagctccaggagctcatgaagggc 234 |||||||||||| ||||||||||| Sbjct: 1525 gagctccaggagatcatgaagggc 1548
>gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map CIC11A04, complete sequence Length = 81004 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 ggagcattaggttattgctatatgtggt 436 ||||||||||| ||| |||||||||||| Sbjct: 60810 ggagcattaggctatggctatatgtggt 60837
>dbj|AK038340.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130096H16 product:Warning: possibly chimeric clone, full insert sequence Length = 1538 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 cattaccatattgagtggcaaatc 359 ||||||||||||| |||||||||| Sbjct: 206 cattaccatattgtgtggcaaatc 183
>ref|NM_073368.4| Caenorhabditis elegans F53H10.2 (F53H10.2) mRNA, complete cds Length = 3152 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 tcagagatttaactttgtcaaagc 334 |||||||||||||||| ||||||| Sbjct: 2347 tcagagatttaactttttcaaagc 2324
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gcgagcgagagagagagccc 77 |||||||||||||||||||| Sbjct: 12111755 gcgagcgagagagagagccc 12111736
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttctagaaccttccagaagc 59 |||||||||||||||||||| Sbjct: 25407545 ttctagaaccttccagaagc 25407564
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gaagcgagcgagagagagag 74 |||||||||||||||||||| Sbjct: 25881494 gaagcgagcgagagagagag 25881475
>emb|BX819013.1|CNS0A9UP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB37ZG02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1296 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 ggagcattaggttattgctatatgtggt 436 ||||||||||| ||| |||||||||||| Sbjct: 398 ggagcattaggctatggctatatgtggt 425
>gb|BT005277.1| Arabidopsis thaliana At2g02730 mRNA, complete cds Length = 831 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 ggagcattaggttattgctatatgtggt 436 ||||||||||| ||| |||||||||||| Sbjct: 301 ggagcattaggctatggctatatgtggt 328
>gb|AY088742.1| Arabidopsis thaliana clone 93828 mRNA, complete sequence Length = 1194 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 ggagcattaggttattgctatatgtggt 436 ||||||||||| ||| |||||||||||| Sbjct: 393 ggagcattaggctatggctatatgtggt 420
>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12 Length = 87434 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ccagaagcgagcgagagaga 71 |||||||||||||||||||| Sbjct: 75439 ccagaagcgagcgagagaga 75420
>dbj|AK119082.1| Arabidopsis thaliana At2g02730 mRNA for unknown protein, complete cds, clone: RAFL21-43-L15 Length = 1177 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 ggagcattaggttattgctatatgtggt 436 ||||||||||| ||| |||||||||||| Sbjct: 384 ggagcattaggctatggctatatgtggt 411
>dbj|AK107318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-E03, full insert sequence Length = 2605 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gagctccaggagctcatgaagggc 234 |||||||||||| ||||||||||| Sbjct: 1256 gagctccaggagatcatgaagggc 1279
>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence Length = 153206 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tcagagatttaactttgtca 330 |||||||||||||||||||| Sbjct: 129770 tcagagatttaactttgtca 129751
>emb|BX957279.13| Zebrafish DNA sequence from clone DKEY-218N20 in linkage group 19, complete sequence Length = 198752 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 attaggttattgctatatgt 433 |||||||||||||||||||| Sbjct: 145839 attaggttattgctatatgt 145820
>emb|BX511258.6| Zebrafish DNA sequence from clone CH211-81E5 in linkage group 19, complete sequence Length = 200076 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 attaggttattgctatatgt 433 |||||||||||||||||||| Sbjct: 87974 attaggttattgctatatgt 87955
>emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chromosome X, complete sequence Length = 221920 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 cattaccatattgagtggcaaatc 359 ||||||||||||| |||||||||| Sbjct: 139785 cattaccatattgtgtggcaaatc 139762
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttctagaaccttccagaagc 59 |||||||||||||||||||| Sbjct: 25726215 ttctagaaccttccagaagc 25726234
>gb|AC016586.9| Homo sapiens chromosome 19 clone CTD-2622I13, complete sequence Length = 205642 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aagcgagcgagagagagagc 75 |||||||||||||||||||| Sbjct: 71471 aagcgagcgagagagagagc 71452 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,573,466 Number of Sequences: 3902068 Number of extensions: 7573466 Number of successful extensions: 96477 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96169 Number of HSP's gapped (non-prelim): 301 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
