ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal3c12 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 300 bits (767), Expect = 2e-81 Identities = 149/150 (99%), Positives = 149/150 (99%) Frame = +2 Query: 53 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 232 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK Sbjct: 1 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 60 Query: 233 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 412 WKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGG Sbjct: 61 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGG 120 Query: 413 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLI Sbjct: 121 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 150
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 267 bits (682), Expect = 1e-71 Identities = 134/152 (88%), Positives = 141/152 (92%), Gaps = 2/152 (1%) Frame = +2 Query: 53 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD- 229 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS NRF VMA E +DE + TD Sbjct: 1 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQ 59 Query: 230 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTM 406 +WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTM Sbjct: 60 DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTM 119 Query: 407 GGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 GGFYIAP+FMDKLVVH+SKNFMTLPNIK+PLI Sbjct: 120 GGFYIAPSFMDKLVVHISKNFMTLPNIKVPLI 151
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 230 bits (587), Expect = 1e-60 Identities = 119/156 (76%), Positives = 134/156 (85%), Gaps = 6/156 (3%) Frame = +2 Query: 53 MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKR 220 MAAAFSSTVGAPASTPT +FLGKKL K QV++AV YHGKSS +N RF MAA+ +DE + Sbjct: 1 MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETK 60 Query: 221 NTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDF 394 TD +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+F Sbjct: 61 QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNF 120 Query: 395 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 DN M GFYIA FMDKLVVHLSKNFMTLPNIK+PLI Sbjct: 121 DNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLI 156
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 222 bits (565), Expect = 5e-58 Identities = 115/154 (74%), Positives = 129/154 (83%), Gaps = 4/154 (2%) Frame = +2 Query: 53 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 226 MA+AFSSTVGAPASTPT FLGKK+K YHG + +R VMAA+ +D+ + T Sbjct: 1 MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 54 Query: 227 D--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDN 400 D +WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDN Sbjct: 55 DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDN 114 Query: 401 TMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 TM G YIAPAFMDKL+VHL+KNFMTLPNIK+PLI Sbjct: 115 TMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLI 148
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 179 bits (454), Expect = 4e-45 Identities = 92/145 (63%), Positives = 110/145 (75%) Frame = +2 Query: 68 SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 247 S V APAST FLGKK V + + + K+N + A D++ + D+W+GLA Sbjct: 23 SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75 Query: 248 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 427 YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP Sbjct: 76 YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135 Query: 428 AFMDKLVVHLSKNFMTLPNIKIPLI 502 AFMDKLVVH++KNF+TLPNIK+PLI Sbjct: 136 AFMDKLVVHITKNFLTLPNIKVPLI 160
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 177 bits (450), Expect = 1e-44 Identities = 91/147 (61%), Positives = 111/147 (75%), Gaps = 2/147 (1%) Frame = +2 Query: 68 SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 241 SS+ P+ST FLG LKK VN +SK + ++ ++DE + TDK WKG Sbjct: 22 SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73 Query: 242 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYI 421 LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YI Sbjct: 74 LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYI 133 Query: 422 APAFMDKLVVHLSKNFMTLPNIKIPLI 502 APAFMDKLVVH++KNFMTLPN+K+PLI Sbjct: 134 APAFMDKLVVHITKNFMTLPNMKVPLI 160
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 176 bits (446), Expect = 3e-44 Identities = 92/161 (57%), Positives = 116/161 (72%), Gaps = 11/161 (6%) Frame = +2 Query: 53 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 202 MAAA+S TVGA P + G + + + + G S K + F ++A E Sbjct: 1 MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59 Query: 203 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 379 + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP GTH AV+SSY+Y+SQGL Sbjct: 60 ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119 Query: 380 RKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 R+Y+ DN M GFYIAPAFMDKLVVH++KNF++LPNIKIPLI Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLI 160
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 176 bits (446), Expect = 3e-44 Identities = 92/161 (57%), Positives = 116/161 (72%), Gaps = 11/161 (6%) Frame = +2 Query: 53 MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 202 MAAA+S TVGA P + G + + + + G S K + F ++A E Sbjct: 1 MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59 Query: 203 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 379 + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP GTH AV+SSY+Y+SQGL Sbjct: 60 ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119 Query: 380 RKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 R+Y+ DN M GFYIAPAFMDKLVVH++KNF++LPNIKIPLI Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLI 160
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 172 bits (435), Expect = 6e-43 Identities = 93/160 (58%), Positives = 110/160 (68%), Gaps = 16/160 (10%) Frame = +2 Query: 71 STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 208 ST+GA TP T F GK LKK V+ ++K+ R V ++ Sbjct: 6 STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64 Query: 209 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 382 D K+ TD +WKGL D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR Sbjct: 65 DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124 Query: 383 KYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 +Y+ DN + GFYIAPAFMDKLVVH++KNF+ LPNIK+PLI Sbjct: 125 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLI 164
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 169 bits (429), Expect = 3e-42 Identities = 89/151 (58%), Positives = 108/151 (71%), Gaps = 4/151 (2%) Frame = +2 Query: 62 AFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--D 229 + +++V + T F GK LKK V+ NR +AAE + D K+ T D Sbjct: 17 SLNNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSD 73 Query: 230 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMG 409 +WKGL D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ Sbjct: 74 RWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLD 133 Query: 410 GFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 GFYIAP+FMDKLVVH++KNF+ LPNIK+PLI Sbjct: 134 GFYIAPSFMDKLVVHITKNFLKLPNIKVPLI 164
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 168 bits (426), Expect = 7e-42 Identities = 87/144 (60%), Positives = 111/144 (77%), Gaps = 3/144 (2%) Frame = +2 Query: 80 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 250 G AS P++ F G LKK ++S V + K + + V A + I+E + T D+W+GLAY Sbjct: 22 GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80 Query: 251 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 430 D+SDDQQDITRGKG+VDSLFQAP GTH AV+SS++Y+S GLR+Y+FDN GFYIAPA Sbjct: 81 DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140 Query: 431 FMDKLVVHLSKNFMTLPNIKIPLI 502 F+DKLVVH++KNFMTLPNIK+PLI Sbjct: 141 FLDKLVVHIAKNFMTLPNIKVPLI 164
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 166 bits (421), Expect = 3e-41 Identities = 88/162 (54%), Positives = 108/162 (66%), Gaps = 14/162 (8%) Frame = +2 Query: 59 AAFSSTVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMA 196 AA ST+GA + P T F GK LKK V+ +NR + Sbjct: 2 AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVV 58 Query: 197 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 376 A+ +DE + D+WKGL + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ Sbjct: 59 AQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117 Query: 377 LRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 L+ Y DN + GFYIAPAFMDKLVVH++KNF+TLPNIK+PLI Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLI 159
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 166 bits (421), Expect = 3e-41 Identities = 90/141 (63%), Positives = 101/141 (71%), Gaps = 1/141 (0%) Frame = +2 Query: 83 APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 259 A AS PT+ FLG LKK SS+ TV AAEN E++NTDKW LA D S Sbjct: 23 AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77 Query: 260 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 439 DDQ DI RGKG+VDSLFQAP GTH + SS+EY SQGLRKYD DN +G FYIAPAFMD Sbjct: 78 DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137 Query: 440 KLVVHLSKNFMTLPNIKIPLI 502 KLVVH++KNF+ LPNIKIPLI Sbjct: 138 KLVVHITKNFLNLPNIKIPLI 158
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 166 bits (419), Expect = 4e-41 Identities = 91/144 (63%), Positives = 107/144 (74%), Gaps = 3/144 (2%) Frame = +2 Query: 80 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 250 GA AS PT+ F G LKK V S V + K + + V A + I+E + T D+WKGLAY Sbjct: 22 GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80 Query: 251 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 430 DISDDQQDITRGKG+VD LFQAP GTH AV+SSYEY+S GLR+ DN GFYIAPA Sbjct: 81 DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138 Query: 431 FMDKLVVHLSKNFMTLPNIKIPLI 502 F+DKLVVH++KNFMTLPNIK+PLI Sbjct: 139 FLDKLVVHITKNFMTLPNIKVPLI 162
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 165 bits (417), Expect = 7e-41 Identities = 88/162 (54%), Positives = 108/162 (66%), Gaps = 14/162 (8%) Frame = +2 Query: 59 AAFSSTVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMA 196 AA ST+GA T N FLG +LK V+ +SK F ++A Sbjct: 2 AATVSTIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVA 55 Query: 197 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 376 ++ +++ DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S G Sbjct: 56 EQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAG 115 Query: 377 LRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 LR Y +DN + GFYIAPAFMDKL VH+ KNF+TLPNIK+PLI Sbjct: 116 LRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLI 157
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 105 bits (262), Expect = 7e-23 Identities = 53/99 (53%), Positives = 70/99 (70%), Gaps = 3/99 (3%) Frame = +2 Query: 215 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 385 ++ +W+ + D SDDQQDITRG+ +VD LFQ G GTH AVLSS EY+SQ + Sbjct: 37 RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94 Query: 386 YDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 F+N GFYI+PAF+DK+ +H++KNFM LP IK+PLI Sbjct: 95 ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLI 133
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 48.9 bits (115), Expect = 8e-06 Identities = 18/30 (60%), Positives = 26/30 (86%) Frame = +2 Query: 413 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 +YIAP F+DKL VH++KNF+ LP +++PLI Sbjct: 3 YYIAPRFLDKLAVHITKNFLNLPGVRVPLI 32
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 48.1 bits (113), Expect = 1e-05 Identities = 17/30 (56%), Positives = 26/30 (86%) Frame = +2 Query: 413 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 502 +YIAP F+DKL VH++KNF+ +P +++PLI Sbjct: 3 YYIAPRFLDKLAVHITKNFLNIPGVRVPLI 32
>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae| Length = 209 Score = 31.2 bits (69), Expect = 1.7 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Frame = +2 Query: 83 APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 262 +PA+ P+ +G+K++ V+ ++ G K++ + + KR T ++ G + +SD Sbjct: 35 SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89 Query: 263 D--QQDITRGKGIVDSLFQAPTGDG 331 D ++ + R K +D + + T DG Sbjct: 90 DTIRRMVRRRKERIDIIMPSKTKDG 114
>PTR2_CANAL (P46030) Peptide transporter PTR2| Length = 623 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Frame = -3 Query: 330 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 184 P+P+ AWK+ S CW + E++Y R ++FL S FSAA+++ Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546
>PCRB_SULAC (Q4JAS3) Protein pcrB homolog| Length = 257 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -2 Query: 418 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 242 +EA G E V P+A+ V +DG+V EER + + +G ++V G+++ + Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234
>PRMA_LEGPH (Q5ZYB1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 289 Score = 30.0 bits (66), Expect = 3.7 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = -2 Query: 490 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 326 + +G H ++DN+ + ++S+ A+H + + P+AL + LV A L + Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQNPVHLVIANILLAPLI 233 Query: 325 ARGRLEERVHDALPSGDVLLVVG 257 + L+ER H LPSG L+ G Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253
>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1060 Score = 29.6 bits (65), Expect = 4.8 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%) Frame = +2 Query: 149 NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 328 N+H K + + A + D R LAY+++D + D +F A +G Sbjct: 807 NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858 Query: 329 GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 487 G HEA E S+ KYDF+ + G + P + L NF L + Sbjct: 859 GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907
>PRMA_LEGPL (Q5WZ79) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 289 Score = 29.3 bits (64), Expect = 6.3 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = -2 Query: 490 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 326 + +G H ++DN+ + ++S+ A+H + + P+AL + LV A L + Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISSPEALQNPVHLVIANILLAPLI 233 Query: 325 ARGRLEERVHDALPSGDVLLVVG 257 + L+ER H LPSG L+ G Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253
>PRMA_LEGPA (Q5X7S8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 289 Score = 29.3 bits (64), Expect = 6.3 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = -2 Query: 490 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 326 + +G H ++DN+ + ++S+ A+H + + P+AL + L+ A L + Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISTPEALQNPVHLIIANILLAPLI 233 Query: 325 ARGRLEERVHDALPSGDVLLVVG 257 + L+ER H LPSG L+ G Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253
>CASZ1_MOUSE (Q9CWL2) Castor homolog 1 zinc finger protein (Castor-related| protein) (Fragment) Length = 255 Score = 29.3 bits (64), Expect = 6.3 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 29 QGRPSSTEMAAAFSSTVGAPASTPTNFLGKKLKKQV 136 QG PS + + G+PA P+ FLGK +K V Sbjct: 52 QGNPSLESFLSIKTEAEGSPAGEPSPFLGKAVKALV 87
>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107| Length = 1070 Score = 29.3 bits (64), Expect = 6.3 Identities = 14/53 (26%), Positives = 28/53 (52%) Frame = +2 Query: 161 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 319 K + + +++ E++ K++TDK+ L +SD+ I K V+S + P Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740
>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC| 3.1.3.48) (Protein tyrosine phosphatase PTP-BL) (Protein-tyrosine phosphatase RIP) (protein tyrosine phosphatase DPZPTP) (PTP36) Length = 2453 Score = 29.3 bits (64), Expect = 6.3 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +2 Query: 251 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 385 D S +D RGKG+ THEA LS +V++GL K Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 28.9 bits (63), Expect = 8.2 Identities = 23/83 (27%), Positives = 36/83 (43%) Frame = -2 Query: 499 EWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAEDGLVGAVAR 320 +W + G+G E +N L + S+ + S G + DV G E G V+ Sbjct: 83 DWAEEGGEGSVAVEETENSLESQDVSEGDESEG------DASEGDVSEGDES--EGDVSE 134 Query: 319 GRLEERVHDALPSGDVLLVVGDI 251 G + ER PS + L VG++ Sbjct: 135 GAVSERAEFPEPSEEAKLFVGNL 157
>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 251 Score = 28.9 bits (63), Expect = 8.2 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = -2 Query: 418 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 239 +E G E + P+A DVL+ AE G+ R+ E DAL G ++ GD+ + T Sbjct: 188 LEVDLGTFEELAPEAPEDVLLVAESGVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246
>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 421 Score = 28.9 bits (63), Expect = 8.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 218 RNTDKWKGLAYDISDDQQDITRGKGI 295 R+ K KG A++ISDD + + KGI Sbjct: 46 RDVKKHKGYAFEISDDLESVIEDKGI 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,115,493 Number of Sequences: 219361 Number of extensions: 1214728 Number of successful extensions: 4370 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4258 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4359 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
