ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal3c03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061870.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A03, full insert sequence Length = 1418 Score = 246 bits (124), Expect = 6e-62 Identities = 208/236 (88%) Strand = Plus / Plus Query: 2 gaggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgc 61 ||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 812 gaggctgcgagctttggcggaacaaacatcgatccgacggcgtgggaggacaagaagtgc 871 Query: 62 aacggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgaccca 121 ||||||||| ||||||||||||||||||| ||| || || |||||||||| ||||| Sbjct: 872 cccggcgagtcgcgcttccctgcacaggtgaaggttgcgacgaggaagatctatgacccg 931 Query: 122 ctggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctc 181 |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||| |||| Sbjct: 932 ctggaggaggacgccttccggccgatcctccaccactacgacggccccaagttcaggctg 991 Query: 182 gagctcagcatcaccgaggctctctccctccttgatatatttgaagacaaggatga 237 ||||||||| || ||||||| |||||||| ||||| || |||| |||||||||||| Sbjct: 992 gagctcagcgtcgccgaggcgctctcccttcttgacatctttgcagacaaggatga 1047
>dbj|AK106151.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H09, full insert sequence Length = 1489 Score = 246 bits (124), Expect = 6e-62 Identities = 208/236 (88%) Strand = Plus / Plus Query: 2 gaggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgc 61 ||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 884 gaggctgcgagctttggcggaacaaacatcgatccgacggcgtgggaggacaagaagtgc 943 Query: 62 aacggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgaccca 121 ||||||||| ||||||||||||||||||| ||| || || |||||||||| ||||| Sbjct: 944 cccggcgagtcgcgcttccctgcacaggtgaaggttgcgacgaggaagatctatgacccg 1003 Query: 122 ctggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctc 181 |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||| |||| Sbjct: 1004 ctggaggaggacgccttccggccgatcctccaccactacgacggccccaagttcaggctg 1063 Query: 182 gagctcagcatcaccgaggctctctccctccttgatatatttgaagacaaggatga 237 ||||||||| || ||||||| |||||||| ||||| || |||| |||||||||||| Sbjct: 1064 gagctcagcgtcgccgaggcgctctcccttcttgacatctttgcagacaaggatga 1119
>dbj|AK067529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108E24, full insert sequence Length = 1622 Score = 246 bits (124), Expect = 6e-62 Identities = 208/236 (88%) Strand = Plus / Plus Query: 2 gaggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgc 61 ||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 885 gaggctgcgagctttggcggaacaaacatcgatccgacggcgtgggaggacaagaagtgc 944 Query: 62 aacggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgaccca 121 ||||||||| ||||||||||||||||||| ||| || || |||||||||| ||||| Sbjct: 945 cccggcgagtcgcgcttccctgcacaggtgaaggttgcgacgaggaagatctatgacccg 1004 Query: 122 ctggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctc 181 |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||| |||| Sbjct: 1005 ctggaggaggacgccttccggccgatcctccaccactacgacggccccaagttcaggctg 1064 Query: 182 gagctcagcatcaccgaggctctctccctccttgatatatttgaagacaaggatga 237 ||||||||| || ||||||| |||||||| ||||| || |||| |||||||||||| Sbjct: 1065 gagctcagcgtcgccgaggcgctctcccttcttgacatctttgcagacaaggatga 1120
>gb|AY104341.1| Zea mays PCO142367 mRNA sequence Length = 1295 Score = 238 bits (120), Expect = 2e-59 Identities = 189/212 (89%) Strand = Plus / Plus Query: 2 gaggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgc 61 |||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||||| Sbjct: 665 gaggccgcgagcttcggcgggaccaacatcgacccgacggcgtgggaggacaagaagtgc 724 Query: 62 aacggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgaccca 121 ||||||||| ||||| ||||| |||||| ||||||| || ||||||||| |||||| Sbjct: 725 cccggcgagtcgcgctttcctgcgcaggtgcgggtggcaacgcggaagatctacgacccg 784 Query: 122 ctggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctc 181 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 785 ctggaggaggacgccttccgccccatcctgcaccactacgacgggcccaagttccggctc 844 Query: 182 gagctcagcatcaccgaggctctctccctcct 213 |||||| | |||||||||| ||| ||||||| Sbjct: 845 gagctctccgtcaccgaggccctcgccctcct 876
>ref|NM_193396.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 210 bits (106), Expect = 3e-51 Identities = 175/198 (88%) Strand = Plus / Plus Query: 2 gaggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgc 61 ||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 817 gaggctgcgagctttggcggaacaaacatcgatccgacggcgtgggaggacaagaagtgc 876 Query: 62 aacggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgaccca 121 ||||||||| ||||||||||||||||||| ||| || || |||||||||| ||||| Sbjct: 877 cccggcgagtcgcgcttccctgcacaggtgaaggttgcgacgaggaagatctatgacccg 936 Query: 122 ctggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctc 181 |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||| |||| Sbjct: 937 ctggaggaggacgccttccggccgatcctccaccactacgacggccccaagttcaggctg 996 Query: 182 gagctcagcatcaccgag 199 ||||||||| || ||||| Sbjct: 997 gagctcagcgtcgccgag 1014
>gb|AY109212.1| Zea mays PCO142361 mRNA sequence Length = 562 Score = 208 bits (105), Expect = 1e-50 Identities = 165/185 (89%) Strand = Plus / Plus Query: 3 aggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgca 62 ||||||| ||||| ||||| | |||||||||||| ||||||||||||||||||||||| Sbjct: 76 aggccgccagcttcggcgggaccaacatcgacccgacggcgtgggaggacaagaagtgcc 135 Query: 63 acggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgacccac 122 ||||||||| |||||||||||||||||| | ||||| || ||||||||| ||| |||| Sbjct: 136 ccggcgagtcgcgcttccctgcacaggtgcgagtggcaacgcggaagatctacgatccac 195 Query: 123 tggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctcg 182 ||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct: 196 tggaggaggacgccttccgccccatccttcaccactacgacgggcccaagtttcggctcg 255 Query: 183 agctc 187 ||||| Sbjct: 256 agctc 260
>gb|DQ427338.1| Sorghum bicolor voucher PI152702 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 |||||| ||||||| || ||||||||| |||||| |||||||||||||| |||||||| Sbjct: 549 caggtgcgggtggcaacgcggaagatctacgaccccctggaggaggacgccttccgcccc 608 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctc 187 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 609 atcctccaccactacgacgggcccaagttccggctcgagctc 650
>gb|DQ427334.1| Sorghum bicolor voucher NSL77034 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 |||||| ||||||| || ||||||||| |||||| |||||||||||||| |||||||| Sbjct: 549 caggtgcgggtggcaacgcggaagatctacgaccccctggaggaggacgccttccgcccc 608 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctc 187 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 609 atcctccaccactacgacgggcccaagttccggctcgagctc 650
>gb|DQ427333.1| Sorghum bicolor voucher NSL56174 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 |||||| ||||||| || ||||||||| |||||| |||||||||||||| |||||||| Sbjct: 549 caggtgcgggtggcaacgcggaagatctacgaccccctggaggaggacgccttccgcccc 608 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctc 187 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 609 atcctccaccactacgacgggcccaagttccggctcgagctc 650
>gb|DQ427332.1| Sorghum bicolor voucher NSL56003 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 |||||| ||||||| || ||||||||| |||||| |||||||||||||| |||||||| Sbjct: 549 caggtgcgggtggcaacgcggaagatctacgaccccctggaggaggacgccttccgcccc 608 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctc 187 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 609 atcctccaccactacgacgggcccaagttccggctcgagctc 650
>gb|DQ427330.1| Sorghum bicolor voucher NSL51365 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 |||||| ||||||| || ||||||||| |||||| |||||||||||||| |||||||| Sbjct: 549 caggtgcgggtggcaacgcggaagatctacgaccccctggaggaggacgccttccgcccc 608 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctc 187 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 609 atcctccaccactacgacgggcccaagttccggctcgagctc 650
>gb|DQ427327.1| Sorghum bicolor voucher BTx623 locus CDSC56 genomic sequence Length = 658 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 |||||| ||||||| || ||||||||| |||||| |||||||||||||| |||||||| Sbjct: 549 caggtgcgggtggcaacgcggaagatctacgaccccctggaggaggacgccttccgcccc 608 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctc 187 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 609 atcctccaccactacgacgggcccaagttccggctcgagctc 650
>gb|DQ427343.1| Sorghum propinquum locus CDSC56 genomic sequence Length = 658 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 568 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 627 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 628 ggcccaagttccggctcgagctc 650
>gb|DQ427342.1| Sorghum bicolor voucher PI585454 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 578 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 637 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 638 ggcccaagttccggctcgagctc 660
>gb|DQ427341.1| Sorghum bicolor voucher PI267539 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 578 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 637 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 638 ggcccaagttccggctcgagctc 660
>gb|DQ427340.1| Sorghum bicolor voucher PI267408 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 578 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 637 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 638 ggcccaagttccggctcgagctc 660
>gb|DQ427339.1| Sorghum bicolor voucher PI221607 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 578 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 637 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 638 ggcccaagttccggctcgagctc 660
>gb|DQ427337.1| Sorghum bicolor voucher NSL92371 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 578 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 637 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 638 ggcccaagttccggctcgagctc 660
>gb|DQ427336.1| Sorghum bicolor voucher NSL87902 locus CDSC56 genomic sequence Length = 651 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 561 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 620 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 621 ggcccaagttccggctcgagctc 643
>gb|DQ427335.1| Sorghum bicolor voucher NSL77217 locus CDSC56 genomic sequence Length = 875 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 785 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 844 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 845 ggcccaagttccggctcgagctc 867
>gb|DQ427329.1| Sorghum bicolor voucher NSL51030 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 578 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 637 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 638 ggcccaagttccggctcgagctc 660
>gb|DQ427328.1| Sorghum bicolor voucher NSL50875 locus CDSC56 genomic sequence Length = 668 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 105 ggaagatctgcgacccactggaggaggacgcattccgccctatcctgcaccactacgacg 164 ||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 578 ggaagatctacgaccccctggaggaggacgccttccgccccatcctccaccactacgacg 637 Query: 165 ggcccaagttccggctcgagctc 187 ||||||||||||||||||||||| Sbjct: 638 ggcccaagttccggctcgagctc 660
>gb|DQ427331.1| Sorghum bicolor voucher NSL55243 locus CDSC56 genomic sequence Length = 879 Score = 123 bits (62), Expect = 6e-25 Identities = 92/102 (90%) Strand = Plus / Plus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 |||||| ||||||| || | ||||||| |||||| |||||||||||||| |||||||| Sbjct: 770 caggtgcgggtggcaacgcgaaagatctacgaccccctggaggaggacgccttccgcccc 829 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctc 187 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 830 atcctccaccactacgacgggcccaagttccggctcgagctc 871
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 3 aggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgca 62 |||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 20596986 aggctgcgagctttggcggaacaaacatcgatccgacggcgtgggaggacaagaagtgcc 20596927 Query: 63 acggcgagtcccgcttccctgcacaggt 90 ||||||||| ||||||||||||||||| Sbjct: 20596926 ccggcgagtcgcgcttccctgcacaggt 20596899 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Minus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 ||||||| ||| || || |||||||||| ||||| |||||||||||||| ||||| || Sbjct: 20596224 caggtgaaggttgcgacgaggaagatctatgacccgctggaggaggacgccttccggccg 20596165 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctcagcatcaccgagg 200 ||||| |||||||||||||| ||||||||| |||| ||||||||| || |||||| Sbjct: 20596164 atcctccaccactacgacggccccaagttcaggctggagctcagcgtcgccgagg 20596110 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 198 aggctctctccctccttgatatatttgaagacaaggatga 237 |||| |||||||| ||||| || |||| |||||||||||| Sbjct: 20595965 aggcgctctcccttcttgacatctttgcagacaaggatga 20595926
>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24 Length = 172642 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 3 aggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgca 62 |||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 58962 aggctgcgagctttggcggaacaaacatcgatccgacggcgtgggaggacaagaagtgcc 58903 Query: 63 acggcgagtcccgcttccctgcacaggt 90 ||||||||| ||||||||||||||||| Sbjct: 58902 ccggcgagtcgcgcttccctgcacaggt 58875 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Minus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 ||||||| ||| || || |||||||||| ||||| |||||||||||||| ||||| || Sbjct: 58200 caggtgaaggttgcgacgaggaagatctatgacccgctggaggaggacgccttccggccg 58141 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctcagcatcaccgagg 200 ||||| |||||||||||||| ||||||||| |||| ||||||||| || |||||| Sbjct: 58140 atcctccaccactacgacggccccaagttcaggctggagctcagcgtcgccgagg 58086 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 198 aggctctctccctccttgatatatttgaagacaaggatga 237 |||| |||||||| ||||| || |||| |||||||||||| Sbjct: 57941 aggcgctctcccttcttgacatctttgcagacaaggatga 57902
>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1156H12 Length = 159509 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 3 aggccgcgagctttggcggagcaaacatcgacccggcggcgtgggaggacaagaagtgca 62 |||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 120808 aggctgcgagctttggcggaacaaacatcgatccgacggcgtgggaggacaagaagtgcc 120749 Query: 63 acggcgagtcccgcttccctgcacaggt 90 ||||||||| ||||||||||||||||| Sbjct: 120748 ccggcgagtcgcgcttccctgcacaggt 120721 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Minus Query: 86 caggtgagggtggccacaaggaagatctgcgacccactggaggaggacgcattccgccct 145 ||||||| ||| || || |||||||||| ||||| |||||||||||||| ||||| || Sbjct: 120046 caggtgaaggttgcgacgaggaagatctatgacccgctggaggaggacgccttccggccg 119987 Query: 146 atcctgcaccactacgacgggcccaagttccggctcgagctcagcatcaccgagg 200 ||||| |||||||||||||| ||||||||| |||| ||||||||| || |||||| Sbjct: 119986 atcctccaccactacgacggccccaagttcaggctggagctcagcgtcgccgagg 119932 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 198 aggctctctccctccttgatatatttgaagacaaggatga 237 |||| |||||||| ||||| || |||| |||||||||||| Sbjct: 119787 aggcgctctcccttcttgacatctttgcagacaaggatga 119748
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 97.6 bits (49), Expect = 4e-17 Identities = 127/153 (83%) Strand = Plus / Minus Query: 64 cggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgacccact 123 |||||||||| | ||||| || ||||| |||||||||| | |||||||| || || || Sbjct: 12956 cggcgagtccaggttcccagcgcaggttcgggtggccacgcgcaagatctgtgagccgct 12897 Query: 124 ggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctcga 183 |||||||||||| ||| | || | ||||||||||||||||| ||||||||||| ||||| Sbjct: 12896 ggaggaggacgccttcaggcccgtgctgcaccactacgacggccccaagttccgcctcga 12837 Query: 184 gctcagcatcaccgaggctctctccctccttga 216 ||||| | || ||||||| || ||||| ||||| Sbjct: 12836 gctcaccgtcgccgaggccctatcccttcttga 12804
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03, complete sequence Length = 45160 Score = 97.6 bits (49), Expect = 4e-17 Identities = 127/153 (83%) Strand = Plus / Plus Query: 64 cggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgacccact 123 |||||||||| | ||||| || ||||| |||||||||| | |||||||| || || || Sbjct: 28334 cggcgagtccaggttcccagcgcaggttcgggtggccacgcgcaagatctgtgagccgct 28393 Query: 124 ggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctcga 183 |||||||||||| ||| | || | ||||||||||||||||| ||||||||||| ||||| Sbjct: 28394 ggaggaggacgccttcaggcccgtgctgcaccactacgacggccccaagttccgcctcga 28453 Query: 184 gctcagcatcaccgaggctctctccctccttga 216 ||||| | || ||||||| || ||||| ||||| Sbjct: 28454 gctcaccgtcgccgaggccctatcccttcttga 28486
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 97.6 bits (49), Expect = 4e-17 Identities = 127/153 (83%) Strand = Plus / Minus Query: 64 cggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgacccact 123 |||||||||| | ||||| || ||||| |||||||||| | |||||||| || || || Sbjct: 29364931 cggcgagtccaggttcccagcgcaggttcgggtggccacgcgcaagatctgtgagccgct 29364872 Query: 124 ggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctcga 183 |||||||||||| ||| | || | ||||||||||||||||| ||||||||||| ||||| Sbjct: 29364871 ggaggaggacgccttcaggcccgtgctgcaccactacgacggccccaagttccgcctcga 29364812 Query: 184 gctcagcatcaccgaggctctctccctccttga 216 ||||| | || ||||||| || ||||| ||||| Sbjct: 29364811 gctcaccgtcgccgaggccctatcccttcttga 29364779
>dbj|AK106130.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F10, full insert sequence Length = 1306 Score = 97.6 bits (49), Expect = 4e-17 Identities = 127/153 (83%) Strand = Plus / Plus Query: 64 cggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgacccact 123 |||||||||| | ||||| || ||||| |||||||||| | |||||||| || || || Sbjct: 886 cggcgagtccaggttcccagcgcaggttcgggtggccacgcgcaagatctgtgagccgct 945 Query: 124 ggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctcga 183 |||||||||||| ||| | || | ||||||||||||||||| ||||||||||| ||||| Sbjct: 946 ggaggaggacgccttcaggcccgtgctgcaccactacgacggccccaagttccgcctcga 1005 Query: 184 gctcagcatcaccgaggctctctccctccttga 216 ||||| | || ||||||| || ||||| ||||| Sbjct: 1006 gctcaccgtcgccgaggccctatcccttcttga 1038
>dbj|AK060122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G03, full insert sequence Length = 1187 Score = 97.6 bits (49), Expect = 4e-17 Identities = 127/153 (83%) Strand = Plus / Plus Query: 64 cggcgagtcccgcttccctgcacaggtgagggtggccacaaggaagatctgcgacccact 123 |||||||||| | ||||| || ||||| |||||||||| | |||||||| || || || Sbjct: 766 cggcgagtccaggttcccagcgcaggttcgggtggccacgcgcaagatctgtgagccgct 825 Query: 124 ggaggaggacgcattccgccctatcctgcaccactacgacgggcccaagttccggctcga 183 |||||||||||| ||| | || | ||||||||||||||||| ||||||||||| ||||| Sbjct: 826 ggaggaggacgccttcaggcccgtgctgcaccactacgacggccccaagttccgcctcga 885 Query: 184 gctcagcatcaccgaggctctctccctccttga 216 ||||| | || ||||||| || ||||| ||||| Sbjct: 886 gctcaccgtcgccgaggccctatcccttcttga 918
>gb|AC113106.9| Mus musculus chromosome 9, clone RP23-325C1, complete sequence Length = 191609 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 311 agtatacatacatacatacgattta 335 ||||||||||||||||||||||||| Sbjct: 49961 agtatacatacatacatacgattta 49985
>gb|AC113127.6| Mus musculus chromosome 9, clone RP23-352H13, complete sequence Length = 185801 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 311 agtatacatacatacatacgattta 335 ||||||||||||||||||||||||| Sbjct: 24077 agtatacatacatacatacgattta 24053
>ref|NM_123570.2| Arabidopsis thaliana unknown protein AT5G42050 mRNA, complete cds Length = 1552 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 150 tgcaccactacgacgggcccaagttccggctcgagctcag 189 |||||||||||||||| || |||||||| ||||| ||||| Sbjct: 1100 tgcaccactacgacggtcctaagttccgactcgaactcag 1139
>gb|AY114057.1| Arabidopsis thaliana unknown protein (At5g42050) mRNA, complete cds Length = 1081 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 150 tgcaccactacgacgggcccaagttccggctcgagctcag 189 |||||||||||||||| || |||||||| ||||| ||||| Sbjct: 959 tgcaccactacgacggtcctaagttccgactcgaactcag 998
>gb|AY080773.1| Arabidopsis thaliana unknown protein (At5g42050) mRNA, complete cds Length = 1497 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 150 tgcaccactacgacgggcccaagttccggctcgagctcag 189 |||||||||||||||| || |||||||| ||||| ||||| Sbjct: 1069 tgcaccactacgacggtcctaagttccgactcgaactcag 1108
>gb|AY088465.1| Arabidopsis thaliana clone 6903 mRNA, complete sequence Length = 1513 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 150 tgcaccactacgacgggcccaagttccggctcgagctcag 189 |||||||||||||||| || |||||||| ||||| ||||| Sbjct: 1101 tgcaccactacgacggtcctaagttccgactcgaactcag 1140
>dbj|AB017067.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20 Length = 83689 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 150 tgcaccactacgacgggcccaagttccggctcgagctcag 189 |||||||||||||||| || |||||||| ||||| ||||| Sbjct: 38990 tgcaccactacgacggtcctaagttccgactcgaactcag 39029
>emb|X72385.1|DCB2P D.carota mRNA for B2 protein Length = 935 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 caccactacgacgggcccaagttccggctcgagctcagcatcaccgaggctctctc 207 ||||||||||| || || |||||||| || ||||||| |||| |||||||| |||| Sbjct: 558 caccactacgatggtcctaagttccgcctggagctcaacatccccgaggctatctc 613
>emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, complete sequence Length = 171724 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 atacatacatacatacgatttat 336 ||||||||||||||||||||||| Sbjct: 1228 atacatacatacatacgatttat 1250
>gb|AF421468.1| Canis familiaris clone INU032 genomic sequence Length = 557 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 370 ctttattgggttttccatctcat 392 ||||||||||||||||||||||| Sbjct: 127 ctttattgggttttccatctcat 149
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 307 ctggagtatacatacatacatac 329 ||||||||||||||||||||||| Sbjct: 457890 ctggagtatacatacatacatac 457912 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 489 atgtatgtataatactattga 509 ||||||||||||||||||||| Sbjct: 1442787 atgtatgtataatactattga 1442767 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 cattatcaattaatggtgat 358 |||||||||||||||||||| Sbjct: 19904560 cattatcaattaatggtgat 19904579
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 307 ctggagtatacatacatacatac 329 ||||||||||||||||||||||| Sbjct: 457890 ctggagtatacatacatacatac 457912 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 489 atgtatgtataatactattga 509 ||||||||||||||||||||| Sbjct: 1442787 atgtatgtataatactattga 1442767 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 cattatcaattaatggtgat 358 |||||||||||||||||||| Sbjct: 19830774 cattatcaattaatggtgat 19830793
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 307 ctggagtatacatacatacatac 329 ||||||||||||||||||||||| Sbjct: 88882 ctggagtatacatacatacatac 88860
>emb|CR933529.9| Zebrafish DNA sequence from clone DKEY-206N17 in linkage group 8, complete sequence Length = 59760 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 314 atacatacatacatacgattta 335 |||||||||||||||||||||| Sbjct: 5928 atacatacatacatacgattta 5907
>gb|AC084855.4| Homo sapiens chromosome 15, clone CTD-3076O17, complete sequence Length = 180944 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 229 caaggatgatgcatgatgaagg 250 |||||||||||||||||||||| Sbjct: 110707 caaggatgatgcatgatgaagg 110686
>dbj|AK057529.1| Homo sapiens cDNA FLJ32967 fis, clone TESTI2008715 Length = 1857 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 229 caaggatgatgcatgatgaagg 250 |||||||||||||||||||||| Sbjct: 105 caaggatgatgcatgatgaagg 126
>dbj|AK057331.1| Homo sapiens cDNA FLJ32769 fis, clone TESTI2001894 Length = 1737 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 229 caaggatgatgcatgatgaagg 250 |||||||||||||||||||||| Sbjct: 1500 caaggatgatgcatgatgaagg 1521
>emb|BX294375.7| Zebrafish DNA sequence from clone DKEY-176M20 in linkage group 17, complete sequence Length = 188455 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 313 tatacatacatacatacgatttatat 338 ||||||||||||||||| |||||||| Sbjct: 14675 tatacatacatacatacaatttatat 14700
>gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, complete sequence Length = 174559 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 caccgaggctctctccctcctt 214 |||||||||||||||||||||| Sbjct: 66284 caccgaggctctctccctcctt 66305
>dbj|AB056450.1| Vigna unguiculata CPRD48 mRNA, partial cds Length = 646 Score = 44.1 bits (22), Expect = 0.45 Identities = 79/98 (80%) Strand = Plus / Plus Query: 77 ttccctgcacaggtgagggtggccacaaggaagatctgcgacccactggaggaggacgca 136 |||||||| |||||||| ||| |||||||| | || || ||||||||||||||| | Sbjct: 23 ttccctgctcaggtgagagtgattacaaggaaaacatgtgaaccactggaggaggactcc 82 Query: 137 ttccgccctatcctgcaccactacgacgggcccaagtt 174 ||| | || ||||| |||||||| || || |||||||| Sbjct: 83 ttcagaccaatccttcaccactatgatggtcccaagtt 120
>ref|NM_116890.1| Arabidopsis thaliana unknown protein AT4G08210 mRNA, complete cds Length = 2061 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 agctttattgggttttccatc 388 ||||||||||||||||||||| Sbjct: 270 agctttattgggttttccatc 250
>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence Length = 162162 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 atacatacatacatacgattt 334 ||||||||||||||||||||| Sbjct: 10827 atacatacatacatacgattt 10807
>gb|AC125133.2| Mus musculus BAC clone RP24-316A22 from chromosome 18, complete sequence Length = 175583 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 314 atacatacatacatacgatttatat 338 |||||||||||||||| |||||||| Sbjct: 121012 atacatacatacatacaatttatat 121036
>gb|AC124693.4| Mus musculus BAC clone RP24-167O14 from chromosome 19, complete sequence Length = 160363 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 atacatacatacatacgattt 334 ||||||||||||||||||||| Sbjct: 149589 atacatacatacatacgattt 149569
>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence Length = 222845 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 tggagtatacatacatacata 328 ||||||||||||||||||||| Sbjct: 104294 tggagtatacatacatacata 104314
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tatacatacatacatacgatt 333 ||||||||||||||||||||| Sbjct: 99332 tatacatacatacatacgatt 99352 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggagtatacatacatacata 328 |||||||||||||||||||| Sbjct: 192545 ggagtatacatacatacata 192564
>emb|AL161510.2|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22 Length = 198131 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 agctttattgggttttccatc 388 ||||||||||||||||||||| Sbjct: 152539 agctttattgggttttccatc 152559
>emb|AL080252.2|ATT12G13 Arabidopsis thaliana DNA chromosome 4, BAC clone T12G13, partial sequence (ESSA project) Length = 91226 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 agctttattgggttttccatc 388 ||||||||||||||||||||| Sbjct: 23636 agctttattgggttttccatc 23656
>emb|BX072572.8| Zebrafish DNA sequence from clone CH211-119A17, complete sequence Length = 173988 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 313 tatacatacatacatacgatttata 337 |||||||||||||||||| |||||| Sbjct: 62874 tatacatacatacatacggtttata 62850
>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence Length = 184396 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 310 gagtatacatacatacatacg 330 ||||||||||||||||||||| Sbjct: 55265 gagtatacatacatacatacg 55285
>gb|AC177797.3| Mus musculus BAC clone RP24-558G11 from chromosome y, complete sequence Length = 174066 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tatacatacatacatacgatt 333 ||||||||||||||||||||| Sbjct: 60444 tatacatacatacatacgatt 60464
>gb|AC067796.11| Homo sapiens chromosome 18, clone RP11-609K12, complete sequence Length = 201861 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 310 gagtatacatacatacatacg 330 ||||||||||||||||||||| Sbjct: 199282 gagtatacatacatacatacg 199302
>dbj|AK156919.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830107I15 product:unclassifiable, full insert sequence Length = 3926 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 tggagtatacatacatacata 328 ||||||||||||||||||||| Sbjct: 3519 tggagtatacatacatacata 3539
>gb|AF321856.1|AF321856 Lolium rigidum clone FHH-t putative cytochrome P450 mRNA, complete cds Length = 1775 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 gacccggcggcgtgggaggac 52 ||||||||||||||||||||| Sbjct: 1283 gacccggcggcgtgggaggac 1303
>gb|AF321855.1|AF321855 Lolium rigidum clone FHH-v putative cytochrome P450 mRNA, complete cds Length = 1795 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 gacccggcggcgtgggaggac 52 ||||||||||||||||||||| Sbjct: 1283 gacccggcggcgtgggaggac 1303
>gb|AY074448.1| Trichosurus vulpecula clone TrvuVL12 immunoglobulin lambda light chain variable region mRNA, partial cds Length = 455 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 ccctgcacaggtgagggtggc 99 ||||||||||||||||||||| Sbjct: 174 ccctgcacaggtgagggtggc 154
>emb|AL929507.37| Zebrafish DNA sequence from clone DKEY-7C18 in linkage group 20, complete sequence Length = 214404 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 313 tatacatacatacatacgatttata 337 |||||||||||||||||| |||||| Sbjct: 190998 tatacatacatacatacggtttata 191022
>emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chromosome 4, complete sequence Length = 164883 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatacg 330 ||||||||||||||||||||| Sbjct: 84349 gagtatacatacatacatacg 84329
>emb|BX000558.5|CNS08CE5 Oryza sativa chromosome 12, . Partial sequence from BAC OJ1227_F03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 28516 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 489 atgtatgtataatactattga 509 ||||||||||||||||||||| Sbjct: 23979 atgtatgtataatactattga 23959
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 atgtatgtataatactattga 509 ||||||||||||||||||||| Sbjct: 182945 atgtatgtataatactattga 182965
>ref|XM_635999.1| Dictyostelium discoideum hypothetical protein (DDB0206085), partial mRNA Length = 2658 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 attatcaattaatggtgata 359 |||||||||||||||||||| Sbjct: 675 attatcaattaatggtgata 694
>gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome 7, complete sequence Length = 239149 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 ataagatggactggagtata 316 |||||||||||||||||||| Sbjct: 42248 ataagatggactggagtata 42267
>ref|XM_469849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gacccggcggcgtgggagga 51 |||||||||||||||||||| Sbjct: 1237 gacccggcggcgtgggagga 1256
>gb|AC147568.5| Mus musculus chromosome 7 clone RP23-15J23, complete sequence Length = 211115 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 189256 gagtatacatacatacatac 189275
>gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, complete sequence Length = 164298 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 120897 gagtatacatacatacatac 120878
>gb|AC127171.54| Mus musculus strain C57BL/6J clone rp23-202i7 map 10, complete sequence Length = 194193 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 53001 gagtatacatacatacatac 53020
>gb|AC102999.7| Rattus norvegicus 7 BAC CH230-33J22 (Children's Hospital Oakland Research Institute) complete sequence Length = 209654 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 142843 atacatacatacatacgatt 142862
>gb|AC118017.15| Mus musculus chromosome 7, clone RP23-457C1, complete sequence Length = 196427 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gtatacatacatacatacga 331 |||||||||||||||||||| Sbjct: 114201 gtatacatacatacatacga 114182
>gb|AC161289.2| Pan troglodytes BAC clone CH251-170B19 from chromosome 7, complete sequence Length = 151213 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 99631 atacatacatacatacgatt 99612
>gb|AC183672.2| Pan troglodytes BAC clone CH251-546K4 from chromosome 7, complete sequence Length = 231124 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 40302 atacatacatacatacgatt 40321
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gacccggcggcgtgggagga 51 |||||||||||||||||||| Sbjct: 31134961 gacccggcggcgtgggagga 31134980
>gb|AC152938.3| Mus musculus BAC clone RP23-469O12 from chromosome 7, complete sequence Length = 183468 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 ataagatggactggagtata 316 |||||||||||||||||||| Sbjct: 173856 ataagatggactggagtata 173875
>gb|AC163285.3| Mus musculus BAC clone RP23-379H2 from chromosome 16, complete sequence Length = 184951 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 197 gaggctctctccctccttgatatatttg 224 ||||||||||||||||| ||| |||||| Sbjct: 82608 gaggctctctccctcctggatctatttg 82581
>gb|AC102125.13| Mus musculus chromosome 6, clone RP23-190E16, complete sequence Length = 219870 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 187067 gagtatacatacatacatac 187048
>gb|AC087801.69| Mus musculus strain C57BL/6J clone rp23-396i23 map 1, complete sequence Length = 197679 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 tggctgcagaagatgagccc 457 |||||||||||||||||||| Sbjct: 21956 tggctgcagaagatgagccc 21975
>gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosome 1, complete sequence Length = 182261 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 115039 atacatacatacatacgatt 115058
>gb|AC121989.2| Mus musculus BAC clone RP24-298C8 from 7, complete sequence Length = 175515 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 77232 gagtatacatacatacatac 77251
>gb|AC146024.3| Pan troglodytes BAC clone RP43-119C21 from 7, complete sequence Length = 139947 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 43634 atacatacatacatacgatt 43653
>emb|AL606526.10| Human DNA sequence from clone RP13-534F18 on chromosome 1, complete sequence Length = 113654 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 tatacatacatacatacgatttat 336 |||||||||||||||| ||||||| Sbjct: 49421 tatacatacatacatatgatttat 49444
>emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K7 on chromosome 1p35.3-36.13 Contains part of a gene encoding a novel protein,, complete sequence Length = 116857 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 ggtgatggctgcagaagatg 452 |||||||||||||||||||| Sbjct: 87328 ggtgatggctgcagaagatg 87309
>gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, complete sequence Length = 221489 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 142795 gagtatacatacatacatac 142814
>gb|AC084026.14| Homo sapiens chromosome 8, clone RP11-486M23, complete sequence Length = 185759 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gaagacaaggatgatgcatg 243 |||||||||||||||||||| Sbjct: 66368 gaagacaaggatgatgcatg 66349
>gb|AC183922.3| Pan troglodytes BAC clone CH251-344F10 from chromosome unknown, complete sequence Length = 146184 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 127860 atacatacatacatacgatt 127879
>emb|CR352288.9| Zebrafish DNA sequence from clone CH211-123P18 in linkage group 16, complete sequence Length = 103979 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 65692 gagtatacatacatacatac 65673
>gb|AC010941.6| Homo sapiens chromosome 8, clone RP11-115C6, complete sequence Length = 166129 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 agctcagcatcaccgaggctctct 206 |||||||||||||| ||||||||| Sbjct: 127198 agctcagcatcacctaggctctct 127175
>gb|AC010036.6| Drosophila melanogaster 3L BAC RP98-7K20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 190369 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tatgtatgtataatactatt 507 |||||||||||||||||||| Sbjct: 148310 tatgtatgtataatactatt 148329
>gb|DQ397629.1| Cenarchaeum symbiosum clone C01B12, complete sequence Length = 34772 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 atatttgaagacaaggatga 237 |||||||||||||||||||| Sbjct: 34058 atatttgaagacaaggatga 34039
>gb|DQ397558.1| Cenarchaeum symbiosum clone C19H10, complete sequence Length = 43787 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 atatttgaagacaaggatga 237 |||||||||||||||||||| Sbjct: 1544 atatttgaagacaaggatga 1525
>gb|AC093957.3| Drosophila melanogaster 3L BAC RP98-14E19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182212 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tatgtatgtataatactatt 507 |||||||||||||||||||| Sbjct: 160090 tatgtatgtataatactatt 160109
>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence Length = 120889 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ggagtatacatacatacata 328 |||||||||||||||||||| Sbjct: 100262 ggagtatacatacatacata 100243
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gacccggcggcgtgggagga 51 |||||||||||||||||||| Sbjct: 55602 gacccggcggcgtgggagga 55621
>gb|AC134836.6| Mus musculus BAC clone RP24-323I5 from chromosome 6, complete sequence Length = 150705 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 12445 gagtatacatacatacatac 12426
>gb|AC148988.5| Mus musculus BAC clone RP23-85B15 from chromosome 7, complete sequence Length = 154177 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 gtatacatacatacatacga 331 |||||||||||||||||||| Sbjct: 132273 gtatacatacatacatacga 132292
>dbj|AK049512.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430018J02 product:unclassifiable, full insert sequence Length = 2357 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggagtatacatacatacata 328 |||||||||||||||||||| Sbjct: 985 ggagtatacatacatacata 1004
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 tcgacccggcggcgtgggaggaca 53 ||||| |||||||||||||||||| Sbjct: 4513301 tcgacgcggcggcgtgggaggaca 4513278
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gacccggcggcgtgggagga 51 |||||||||||||||||||| Sbjct: 31225484 gacccggcggcgtgggagga 31225503
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 28740813 gagtatacatacatacatac 28740794
>emb|BX833882.1|CNS09Z8S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL81ZF07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 802 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 150 tgcaccactacgacgggcccaagttccggctcgagctcag 189 |||||||||||||||| || ||||||| ||||| ||||| Sbjct: 391 tgcaccactacgacggtcctcagttccgactcgaactcag 430
>gb|BC044776.2| Mus musculus, clone IMAGE:5361456, mRNA Length = 2123 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 gtatacatacatacatacga 331 |||||||||||||||||||| Sbjct: 1747 gtatacatacatacatacga 1766
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 57386 gagtatacatacatacatac 57367
>emb|AL773561.7| Mouse DNA sequence from clone RP23-71D9 on chromosome X, complete sequence Length = 174072 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggagtatacatacatacata 328 |||||||||||||||||||| Sbjct: 127434 ggagtatacatacatacata 127453
>gb|AC154427.2| Mus musculus BAC clone RP24-200D20 from 16, complete sequence Length = 163687 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 197 gaggctctctccctccttgatatatttg 224 ||||||||||||||||| ||| |||||| Sbjct: 996 gaggctctctccctcctggatctatttg 969
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgacccggcggcgtgggagg 50 |||||||||||||||||||| Sbjct: 1575312 cgacccggcggcgtgggagg 1575293
>gb|AY552588.1| Trypanosoma cruzi clone C6:24B7 telomeric region Length = 34387 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aaacatcgacccggcggcgt 44 |||||||||||||||||||| Sbjct: 27406 aaacatcgacccggcggcgt 27425
>emb|BX248499.12| Zebrafish DNA sequence from clone CH211-284A13 in linkage group 19, complete sequence Length = 148683 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 66420 gagtatacatacatacatac 66401
>gb|AY110147.1| Zea mays CL377_-3 mRNA sequence Length = 620 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gacccggcggcgtgggagga 51 |||||||||||||||||||| Sbjct: 180 gacccggcggcgtgggagga 199
>gb|AC116882.9| Mus musculus chromosome 8, clone RP24-435G18, complete sequence Length = 187290 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 122607 gagtatacatacatacatac 122588
>emb|CT954231.1| Medicago truncatula chromosome 5 clone mth2-166e2, COMPLETE SEQUENCE Length = 122895 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggagtatacatacatacata 328 |||||||||||||||||||| Sbjct: 22612 ggagtatacatacatacata 22631
>gb|AE003534.3| Drosophila melanogaster chromosome 3L, section 51 of 83 of the complete sequence Length = 263717 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tatgtatgtataatactatt 507 |||||||||||||||||||| Sbjct: 209866 tatgtatgtataatactatt 209885
>emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chromosome 2, complete sequence Length = 208470 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 103132 gagtatacatacatacatac 103113
>emb|AL845506.6| Mouse DNA sequence from clone RP23-401M24 on chromosome 2, complete sequence Length = 92280 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 307 ctggagtatacatacatacatacgattt 334 |||||||| |||||||||||||| |||| Sbjct: 73627 ctggagtacacatacatacataccattt 73600
>gb|L02306.1|RCCMETAL Ricinus communis metallothionein (RCMIT) mRNA, complete cds Length = 571 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 523 atacatacatacatacgatt 504
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cattatcaattaatggtgat 358 |||||||||||||||||||| Sbjct: 122700 cattatcaattaatggtgat 122681
>gb|AC151579.2| Mus musculus BAC clone RP23-191P7 from 1, complete sequence Length = 204175 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggagtatacatacatacata 328 |||||||||||||||||||| Sbjct: 27274 ggagtatacatacatacata 27293
>dbj|AP006704.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588c, complete sequence Length = 16978 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 4048 atacatacatacatacgatt 4029
>gb|AC123793.5| Mus musculus BAC clone RP24-315L18 from chromosome 1, complete sequence Length = 206081 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggagtatacatacatacata 328 |||||||||||||||||||| Sbjct: 157101 ggagtatacatacatacata 157120
>emb|AL626773.18| Mouse DNA sequence from clone RP23-273M9 on chromosome 4, complete sequence Length = 193852 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 gagtatacatacatacatac 329 |||||||||||||||||||| Sbjct: 161993 gagtatacatacatacatac 162012
>emb|AL844547.9| Mouse DNA sequence from clone RP23-216B20 on chromosome 2, complete sequence Length = 210589 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 atacatacatacatacgatt 333 |||||||||||||||||||| Sbjct: 177609 atacatacatacatacgatt 177590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,484,072 Number of Sequences: 3902068 Number of extensions: 5484072 Number of successful extensions: 328420 Number of sequences better than 10.0: 129 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 326978 Number of HSP's gapped (non-prelim): 1441 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
