| Clone Name | baal2n01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463609.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1443 Score = 494 bits (249), Expect = e-136 Identities = 484/561 (86%), Gaps = 1/561 (0%) Strand = Plus / Plus Query: 10 gactcgctctccctgcccaagccggnacttccggggccttataccgttcgagaagagctt 69 |||||||||||| |||| ||||| | |||||||| |||||||||| |||||||||| ||| Sbjct: 301 gactcgctctccttgccgaagcctg-acttccggagccttatacccttcgagaagaactt 359 Query: 70 ctacgtggaatgccccgccgtgcaggccatgtcggagacggaggtggcgcagtaccgtca 129 ||| ||||| ||||||||||||||||||||||| || | ||| ||| ||||||| |||| Sbjct: 360 ctatgtggagtgccccgccgtgcaggccatgtcagacatggatgtgtcgcagtatcgtcg 419 Query: 130 gctccgggatatcaccgtggagggccgggaggtgcccaagcctatccgcttcttccatga 189 | || |||||||| || || |||| || ||||||||||| | |||| |||||| || Sbjct: 420 ccagcgtgatatcactgttgaaggccacgacgtgcccaagccggttcgctacttccagga 479 Query: 190 agccaactttccagattactgcatgcaagcgatcgccaagtccggatttgtggagccaac 249 |||||||| ||||||||||| |||||||| || |||||| ||||| || ||||| || Sbjct: 480 ggccaacttcccagattactgtatgcaagcaatagccaagagtggattcgtagagcccac 539 Query: 250 gcctatccaagctcagggttggccgatggctttgaagggcagggacgtgattggtattgc 309 |||||| || | || |||||||| ||||||||||||||||||||| |||| ||||| || Sbjct: 540 gcctattcagtcacaaggttggccaatggctttgaagggcagggacatgatcggtatcgc 599 Query: 310 agaaactggatctgggaaaacactatcttacatactacctggtttggttcatgttggtgc 369 | ||||||| ||||||||||||||||||||| | || ||||| ||||||||||||||||| Sbjct: 600 acaaactggctctgggaaaacactatcttaccttctccctgggttggttcatgttggtgc 659 Query: 370 acaacctcgactcgaacaaggtgatggcccaattgtcttgatccttgctccaacaagaga 429 ||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 660 acagcctcgactagaacaaggtgatggcccaattgttctgatccttgctcctacaagaga 719 Query: 430 actggctgttcaaatacaggcagaagctacaaagtttggatcatactcgagaactagaag 489 |||||||||||||||||| |||| || || |||||||||||||| ||||||||||| Sbjct: 720 actggctgttcaaatacaacaagaatctggcaaatttggatcatactcaagaactagaag 779 Query: 490 cacatgtatctacggtggagcacctaagggaccacaaatacgtgacctcaggagaggagt 549 ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 780 cacttgtatctatggtggagcacctaagggaccacaaatacgtgaccttaggagaggggt 839 Query: 550 tgaaatcgtcattgcaacacc 570 ||| || |||||||||||||| Sbjct: 840 tgagattgtcattgcaacacc 860
>dbj|AK064782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B12, full insert sequence Length = 3413 Score = 494 bits (249), Expect = e-136 Identities = 484/561 (86%), Gaps = 1/561 (0%) Strand = Plus / Plus Query: 10 gactcgctctccctgcccaagccggnacttccggggccttataccgttcgagaagagctt 69 |||||||||||| |||| ||||| | |||||||| |||||||||| |||||||||| ||| Sbjct: 447 gactcgctctccttgccgaagcctg-acttccggagccttatacccttcgagaagaactt 505 Query: 70 ctacgtggaatgccccgccgtgcaggccatgtcggagacggaggtggcgcagtaccgtca 129 ||| ||||| ||||||||||||||||||||||| || | ||| ||| ||||||| |||| Sbjct: 506 ctatgtggagtgccccgccgtgcaggccatgtcagacatggatgtgtcgcagtatcgtcg 565 Query: 130 gctccgggatatcaccgtggagggccgggaggtgcccaagcctatccgcttcttccatga 189 | || |||||||| || || |||| || ||||||||||| | |||| |||||| || Sbjct: 566 ccagcgtgatatcactgttgaaggccacgacgtgcccaagccggttcgctacttccagga 625 Query: 190 agccaactttccagattactgcatgcaagcgatcgccaagtccggatttgtggagccaac 249 |||||||| ||||||||||| |||||||| || |||||| ||||| || ||||| || Sbjct: 626 ggccaacttcccagattactgtatgcaagcaatagccaagagtggattcgtagagcccac 685 Query: 250 gcctatccaagctcagggttggccgatggctttgaagggcagggacgtgattggtattgc 309 |||||| || | || |||||||| ||||||||||||||||||||| |||| ||||| || Sbjct: 686 gcctattcagtcacaaggttggccaatggctttgaagggcagggacatgatcggtatcgc 745 Query: 310 agaaactggatctgggaaaacactatcttacatactacctggtttggttcatgttggtgc 369 | ||||||| ||||||||||||||||||||| | || ||||| ||||||||||||||||| Sbjct: 746 acaaactggctctgggaaaacactatcttaccttctccctgggttggttcatgttggtgc 805 Query: 370 acaacctcgactcgaacaaggtgatggcccaattgtcttgatccttgctccaacaagaga 429 ||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 806 acagcctcgactagaacaaggtgatggcccaattgttctgatccttgctcctacaagaga 865 Query: 430 actggctgttcaaatacaggcagaagctacaaagtttggatcatactcgagaactagaag 489 |||||||||||||||||| |||| || || |||||||||||||| ||||||||||| Sbjct: 866 actggctgttcaaatacaacaagaatctggcaaatttggatcatactcaagaactagaag 925 Query: 490 cacatgtatctacggtggagcacctaagggaccacaaatacgtgacctcaggagaggagt 549 ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 926 cacttgtatctatggtggagcacctaagggaccacaaatacgtgaccttaggagaggggt 985 Query: 550 tgaaatcgtcattgcaacacc 570 ||| || |||||||||||||| Sbjct: 986 tgagattgtcattgcaacacc 1006
>gb|AY466159.1| Zea mays DEAD box RNA helicase (DRH1) mRNA, complete cds Length = 2214 Score = 339 bits (171), Expect = 6e-90 Identities = 473/563 (84%), Gaps = 13/563 (2%) Strand = Plus / Plus Query: 5 ggctcgactcgctctccctgcccaagccggnacttccggggccttataccgttcgagaag 64 |||| ||||||||| |||| || ||||||| |||| ||| |||| |||||| ||||||| Sbjct: 380 ggcttgactcgctcgccctccctaagccgg-actttcggagcctgataccggtcgagaaa 438 Query: 65 agcttctacgtggaatgccccgccgtgcaggccatgtcggagacggaggtggcgcagtac 124 | ||| |||||||| || ||| |||| ||| | ||||||||| ||| |||||||||||| Sbjct: 439 aacttttacgtggagtgtccctccgtccag-caatgtcggagg-ggatgtggcgcagtac 496 Query: 125 cgtcagctccgggatatcaccgtggagggccgggaggtgcccaagcctatccgcttcttc 184 || | ||| ||||||||||| | | ||||||| ||||||||||| | | | |||| Sbjct: 497 cgccgcctc-gggatatcaccatcg---gccgggatgtgcccaagccggta-gatacttc 551 Query: 185 catgaagccaactttccagattactgcatgcaagcgatcgccaagtccggatttgtggag 244 | ||||||||||| |||||||||||||||||||| || ||||| || |||||||||||| Sbjct: 552 -aggaagccaacttcccagattactgcatgcaagctattgccaa-tctggatttgtggag 609 Query: 245 ccaacgcctatccaagctcagggttggccgatggctttgaagggcagggacgtgattggt 304 ||||| ||||| ||| |||| |||||||| ||| |||||||| |||||| |||||||| Sbjct: 610 ccaacacctattcaatctcaaggttggcctatg---ttgaagggtagggacctgattggt 666 Query: 305 attgcagaaactggatctgggaaaacactatcttacatactacctggtttggttcatgtt 364 || || |||| || || ||||||||| ||||||| | ||||||| ||||||||||| Sbjct: 667 atcgctcaaacaggctcagggaaaacattatcttatctgttacctgggctggttcatgtt 726 Query: 365 ggtgcacaacctcgactcgaacaaggtgatggcccaattgtcttgatccttgctccaaca 424 ||||| || ||||| || |||||||| |||||||||||||| || || || ||||| ||| Sbjct: 727 ggtgcccagcctcggctagaacaaggcgatggcccaattgtattaattctcgctcccaca 786 Query: 425 agagaactggctgttcaaatacaggcagaagctacaaagtttggatcatactcgagaact 484 ||||||||||||||||||||||||| |||| ||||||| ||||||||||| || |||||| Sbjct: 787 agagaactggctgttcaaatacaggaagaatctacaaaatttggatcatattcaagaact 846 Query: 485 agaagcacatgtatctacggtggagcacctaagggaccacaaatacgtgacctcaggaga 544 |||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||| || ||| Sbjct: 847 agaagcacatgtgtctatggtggtgcacctaagggtccacaaatacgggaccttagaaga 906 Query: 545 ggagttgaaatcgtcattgcaac 567 ||||||||||| ||||||||||| Sbjct: 907 ggagttgaaattgtcattgcaac 929
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 206 bits (104), Expect = 6e-50 Identities = 149/164 (90%) Strand = Plus / Minus Query: 383 gaacaaggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaa 442 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 39684703 gaacaaggtgatggcccaattgttctgatccttgctcctacaagagaactggctgttcaa 39684644 Query: 443 atacaggcagaagctacaaagtttggatcatactcgagaactagaagcacatgtatctac 502 ||||| |||| || || |||||||||||||| |||||||||||||| |||||||| Sbjct: 39684643 atacaacaagaatctggcaaatttggatcatactcaagaactagaagcacttgtatctat 39684584 Query: 503 ggtggagcacctaagggaccacaaatacgtgacctcaggagagg 546 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 39684583 ggtggagcacctaagggaccacaaatacgtgaccttaggagagg 39684540 Score = 161 bits (81), Expect = 3e-36 Identities = 156/181 (86%) Strand = Plus / Minus Query: 201 cagattactgcatgcaagcgatcgccaagtccggatttgtggagccaacgcctatccaag 260 |||||||||| |||||||| || |||||| ||||| || ||||| |||||||| || Sbjct: 39684965 cagattactgtatgcaagcaatagccaagagtggattcgtagagcccacgcctattcagt 39684906 Query: 261 ctcagggttggccgatggctttgaagggcagggacgtgattggtattgcagaaactggat 320 | || |||||||| ||||||||||||||||||||| |||| ||||| ||| ||||||| | Sbjct: 39684905 cacaaggttggccaatggctttgaagggcagggacatgatcggtatcgcacaaactggct 39684846 Query: 321 ctgggaaaacactatcttacatactacctggtttggttcatgttggtgcacaacctcgac 380 |||||||||||||||||||| | || ||||| |||||||||||||||||||| ||||||| Sbjct: 39684845 ctgggaaaacactatcttaccttctccctgggttggttcatgttggtgcacagcctcgac 39684786 Query: 381 t 381 | Sbjct: 39684785 t 39684785 Score = 115 bits (58), Expect = 2e-22 Identities = 161/194 (82%), Gaps = 1/194 (0%) Strand = Plus / Minus Query: 10 gactcgctctccctgcccaagccggnacttccggggccttataccgttcgagaagagctt 69 |||||||||||| |||| ||||| | |||||||| |||||||||| |||||||||| ||| Sbjct: 39685271 gactcgctctccttgccgaagcctg-acttccggagccttatacccttcgagaagaactt 39685213 Query: 70 ctacgtggaatgccccgccgtgcaggccatgtcggagacggaggtggcgcagtaccgtca 129 ||| ||||| ||||||||||||||||||||||| || | ||| ||| ||||||| |||| Sbjct: 39685212 ctatgtggagtgccccgccgtgcaggccatgtcagacatggatgtgtcgcagtatcgtcg 39685153 Query: 130 gctccgggatatcaccgtggagggccgggaggtgcccaagcctatccgcttcttccatga 189 | || |||||||| || || |||| || ||||||||||| | |||| |||||| || Sbjct: 39685152 ccagcgtgatatcactgttgaaggccacgacgtgcccaagccggttcgctacttccagga 39685093 Query: 190 agccaactttccag 203 |||||||| |||| Sbjct: 39685092 ggccaacttcccag 39685079 Score = 58.0 bits (29), Expect = 3e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 55 gttcgagaagagcttctacgtggaatgccccgccgtgcaggccatgtcggagacggaggt 114 ||||||||||| |||||||||||| | |||| ||||| | |||| ||||| |||||| Sbjct: 5249735 gttcgagaagaacttctacgtggagtccccctccgtggccggcatgacggaggaggaggt 5249676 Query: 115 ggcgcagtaccgtcagctccgggatatcaccgtggagggccgggaggtgcccaagcc 171 || | ||||| | | |||||| ||||||||||||||||| || ||||||||||| Sbjct: 5249675 ggaggcctaccggcgccgccgggagatcaccgtggagggccgcgacgtgcccaagcc 5249619
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 206 bits (104), Expect = 6e-50 Identities = 149/164 (90%) Strand = Plus / Minus Query: 383 gaacaaggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaa 442 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 165659 gaacaaggtgatggcccaattgttctgatccttgctcctacaagagaactggctgttcaa 165600 Query: 443 atacaggcagaagctacaaagtttggatcatactcgagaactagaagcacatgtatctac 502 ||||| |||| || || |||||||||||||| |||||||||||||| |||||||| Sbjct: 165599 atacaacaagaatctggcaaatttggatcatactcaagaactagaagcacttgtatctat 165540 Query: 503 ggtggagcacctaagggaccacaaatacgtgacctcaggagagg 546 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 165539 ggtggagcacctaagggaccacaaatacgtgaccttaggagagg 165496 Score = 161 bits (81), Expect = 3e-36 Identities = 156/181 (86%) Strand = Plus / Minus Query: 201 cagattactgcatgcaagcgatcgccaagtccggatttgtggagccaacgcctatccaag 260 |||||||||| |||||||| || |||||| ||||| || ||||| |||||||| || Sbjct: 165921 cagattactgtatgcaagcaatagccaagagtggattcgtagagcccacgcctattcagt 165862 Query: 261 ctcagggttggccgatggctttgaagggcagggacgtgattggtattgcagaaactggat 320 | || |||||||| ||||||||||||||||||||| |||| ||||| ||| ||||||| | Sbjct: 165861 cacaaggttggccaatggctttgaagggcagggacatgatcggtatcgcacaaactggct 165802 Query: 321 ctgggaaaacactatcttacatactacctggtttggttcatgttggtgcacaacctcgac 380 |||||||||||||||||||| | || ||||| |||||||||||||||||||| ||||||| Sbjct: 165801 ctgggaaaacactatcttaccttctccctgggttggttcatgttggtgcacagcctcgac 165742 Query: 381 t 381 | Sbjct: 165741 t 165741 Score = 115 bits (58), Expect = 2e-22 Identities = 161/194 (82%), Gaps = 1/194 (0%) Strand = Plus / Minus Query: 10 gactcgctctccctgcccaagccggnacttccggggccttataccgttcgagaagagctt 69 |||||||||||| |||| ||||| | |||||||| |||||||||| |||||||||| ||| Sbjct: 166227 gactcgctctccttgccgaagcctg-acttccggagccttatacccttcgagaagaactt 166169 Query: 70 ctacgtggaatgccccgccgtgcaggccatgtcggagacggaggtggcgcagtaccgtca 129 ||| ||||| ||||||||||||||||||||||| || | ||| ||| ||||||| |||| Sbjct: 166168 ctatgtggagtgccccgccgtgcaggccatgtcagacatggatgtgtcgcagtatcgtcg 166109 Query: 130 gctccgggatatcaccgtggagggccgggaggtgcccaagcctatccgcttcttccatga 189 | || |||||||| || || |||| || ||||||||||| | |||| |||||| || Sbjct: 166108 ccagcgtgatatcactgttgaaggccacgacgtgcccaagccggttcgctacttccagga 166049 Query: 190 agccaactttccag 203 |||||||| |||| Sbjct: 166048 ggccaacttcccag 166035
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 206 bits (104), Expect = 6e-50 Identities = 149/164 (90%) Strand = Plus / Minus Query: 383 gaacaaggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaa 442 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 35602 gaacaaggtgatggcccaattgttctgatccttgctcctacaagagaactggctgttcaa 35543 Query: 443 atacaggcagaagctacaaagtttggatcatactcgagaactagaagcacatgtatctac 502 ||||| |||| || || |||||||||||||| |||||||||||||| |||||||| Sbjct: 35542 atacaacaagaatctggcaaatttggatcatactcaagaactagaagcacttgtatctat 35483 Query: 503 ggtggagcacctaagggaccacaaatacgtgacctcaggagagg 546 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 35482 ggtggagcacctaagggaccacaaatacgtgaccttaggagagg 35439 Score = 161 bits (81), Expect = 3e-36 Identities = 156/181 (86%) Strand = Plus / Minus Query: 201 cagattactgcatgcaagcgatcgccaagtccggatttgtggagccaacgcctatccaag 260 |||||||||| |||||||| || |||||| ||||| || ||||| |||||||| || Sbjct: 35864 cagattactgtatgcaagcaatagccaagagtggattcgtagagcccacgcctattcagt 35805 Query: 261 ctcagggttggccgatggctttgaagggcagggacgtgattggtattgcagaaactggat 320 | || |||||||| ||||||||||||||||||||| |||| ||||| ||| ||||||| | Sbjct: 35804 cacaaggttggccaatggctttgaagggcagggacatgatcggtatcgcacaaactggct 35745 Query: 321 ctgggaaaacactatcttacatactacctggtttggttcatgttggtgcacaacctcgac 380 |||||||||||||||||||| | || ||||| |||||||||||||||||||| ||||||| Sbjct: 35744 ctgggaaaacactatcttaccttctccctgggttggttcatgttggtgcacagcctcgac 35685 Query: 381 t 381 | Sbjct: 35684 t 35684 Score = 115 bits (58), Expect = 2e-22 Identities = 161/194 (82%), Gaps = 1/194 (0%) Strand = Plus / Minus Query: 10 gactcgctctccctgcccaagccggnacttccggggccttataccgttcgagaagagctt 69 |||||||||||| |||| ||||| | |||||||| |||||||||| |||||||||| ||| Sbjct: 36170 gactcgctctccttgccgaagcctg-acttccggagccttatacccttcgagaagaactt 36112 Query: 70 ctacgtggaatgccccgccgtgcaggccatgtcggagacggaggtggcgcagtaccgtca 129 ||| ||||| ||||||||||||||||||||||| || | ||| ||| ||||||| |||| Sbjct: 36111 ctatgtggagtgccccgccgtgcaggccatgtcagacatggatgtgtcgcagtatcgtcg 36052 Query: 130 gctccgggatatcaccgtggagggccgggaggtgcccaagcctatccgcttcttccatga 189 | || |||||||| || || |||| || ||||||||||| | |||| |||||| || Sbjct: 36051 ccagcgtgatatcactgttgaaggccacgacgtgcccaagccggttcgctacttccagga 35992 Query: 190 agccaactttccag 203 |||||||| |||| Sbjct: 35991 ggccaacttcccag 35978
>ref|NM_125706.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT5G63120 transcript variant AT5G63120.1 mRNA, complete cds Length = 2372 Score = 103 bits (52), Expect = 6e-19 Identities = 163/200 (81%) Strand = Plus / Plus Query: 242 gagccaacgcctatccaagctcagggttggccgatggctttgaagggcagggacgtgatt 301 |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 753 gagccaacacctatacaagctcagggatggccgatggcgttgaagggtagggatttgatt 812 Query: 302 ggtattgcagaaactggatctgggaaaacactatcttacatactacctggtttggttcat 361 |||||||| || ||||| ||||| || ||| | ||||| | |||| | |||||||| Sbjct: 813 ggtattgctgagactggctctggtaagacattggcttacttgttaccagcattggttcac 872 Query: 362 gttggtgcacaacctcgactcgaacaaggtgatggcccaattgtcttgatccttgctcca 421 ||| |||||||||||||| | | || | ||||||||| ||||| || || | ||||| Sbjct: 873 gttagtgcacaacctcgattaggtcaggatgatggccccattgtgttaatattagctccc 932 Query: 422 acaagagaactggctgttca 441 ||||||||||| |||||||| Sbjct: 933 acaagagaactagctgttca 952
>ref|NM_203256.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT5G63120 transcript variant AT5G63120.2 mRNA, complete cds Length = 2185 Score = 103 bits (52), Expect = 6e-19 Identities = 163/200 (81%) Strand = Plus / Plus Query: 242 gagccaacgcctatccaagctcagggttggccgatggctttgaagggcagggacgtgatt 301 |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 753 gagccaacacctatacaagctcagggatggccgatggcgttgaagggtagggatttgatt 812 Query: 302 ggtattgcagaaactggatctgggaaaacactatcttacatactacctggtttggttcat 361 |||||||| || ||||| ||||| || ||| | ||||| | |||| | |||||||| Sbjct: 813 ggtattgctgagactggctctggtaagacattggcttacttgttaccagcattggttcac 872 Query: 362 gttggtgcacaacctcgactcgaacaaggtgatggcccaattgtcttgatccttgctcca 421 ||| |||||||||||||| | | || | ||||||||| ||||| || || | ||||| Sbjct: 873 gttagtgcacaacctcgattaggtcaggatgatggccccattgtgttaatattagctccc 932 Query: 422 acaagagaactggctgttca 441 ||||||||||| |||||||| Sbjct: 933 acaagagaactagctgttca 952
>gb|BT000610.1| Arabidopsis thaliana AtP-dependent RNA helicase-like protein (At5g63120/MDC12_8) mRNA, complete cds Length = 1455 Score = 103 bits (52), Expect = 6e-19 Identities = 163/200 (81%) Strand = Plus / Plus Query: 242 gagccaacgcctatccaagctcagggttggccgatggctttgaagggcagggacgtgatt 301 |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 559 gagccaacacctatacaagctcagggatggccgatggcgttgaagggtagggatttgatt 618 Query: 302 ggtattgcagaaactggatctgggaaaacactatcttacatactacctggtttggttcat 361 |||||||| || ||||| ||||| || ||| | ||||| | |||| | |||||||| Sbjct: 619 ggtattgctgagactggctctggtaagacattggcttacttgttaccagcattggttcac 678 Query: 362 gttggtgcacaacctcgactcgaacaaggtgatggcccaattgtcttgatccttgctcca 421 ||| |||||||||||||| | | || | ||||||||| ||||| || || | ||||| Sbjct: 679 gttagtgcacaacctcgattaggtcaggatgatggccccattgtgttaatattagctccc 738 Query: 422 acaagagaactggctgttca 441 ||||||||||| |||||||| Sbjct: 739 acaagagaactagctgttca 758
>gb|AY060589.1| Arabidopsis thaliana AT5g63120/MDC12_8 mRNA, complete cds Length = 2366 Score = 103 bits (52), Expect = 6e-19 Identities = 163/200 (81%) Strand = Plus / Plus Query: 242 gagccaacgcctatccaagctcagggttggccgatggctttgaagggcagggacgtgatt 301 |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 754 gagccaacacctatacaagctcagggatggccgatggcgttgaagggtagggatttgatt 813 Query: 302 ggtattgcagaaactggatctgggaaaacactatcttacatactacctggtttggttcat 361 |||||||| || ||||| ||||| || ||| | ||||| | |||| | |||||||| Sbjct: 814 ggtattgctgagactggctctggtaagacattggcttacttgttaccagcattggttcac 873 Query: 362 gttggtgcacaacctcgactcgaacaaggtgatggcccaattgtcttgatccttgctcca 421 ||| |||||||||||||| | | || | ||||||||| ||||| || || | ||||| Sbjct: 874 gttagtgcacaacctcgattaggtcaggatgatggccccattgtgttaatattagctccc 933 Query: 422 acaagagaactggctgttca 441 ||||||||||| |||||||| Sbjct: 934 acaagagaactagctgttca 953
>emb|BX832051.1|CNS09YVO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH48ZH12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2119 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 242 gagccaacgcctatccaagctcagggttggccgatggctttgaagggcagggacgtgatt 301 |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 742 gagccaacacctatacaagctcagggatggccgatggcgttgaagggtagggatttgatt 801 Query: 302 ggtattgcagaaactggatctgggaaaacactatcttacatactacctggtttggttcat 361 |||||||| || ||||| ||||| || ||| | ||||| | |||| | |||||||| Sbjct: 802 ggtattgctgagactggctctggtaagacattggcttacttgttaccagcattggttcac 861 Query: 362 gttggtgcacaacctcga 379 ||| |||||||||||||| Sbjct: 862 gttagtgcacaacctcga 879
>dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDC12 Length = 81662 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 242 gagccaacgcctatccaagctcagggttggccgatggctttgaagggcagggacgtgatt 301 |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 29983 gagccaacacctatacaagctcagggatggccgatggcgttgaagggtagggatttgatt 29924 Query: 302 ggtattgcagaaactggatctgggaaaacactatcttacatactacctggtttggttcat 361 |||||||| || ||||| ||||| || ||| | ||||| | |||| | |||||||| Sbjct: 29923 ggtattgctgagactggctctggtaagacattggcttacttgttaccagcattggttcac 29864 Query: 362 gttggtgcacaacctcga 379 ||| |||||||||||||| Sbjct: 29863 gttagtgcacaacctcga 29846
>ref|NM_004396.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (DDX5), mRNA Length = 2325 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 768 tgtatctacggtggtgctcctaagggaccacaaatacgtga 808
>ref|XM_512004.1| PREDICTED: Pan troglodytes DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (LOC455267), mRNA Length = 1462 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 743 tgtatctacggtggtgctcctaagggaccacaaatacgtga 783
>gb|BC016027.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone MGC:1516 IMAGE:3528578), complete cds Length = 2366 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 739 tgtatctacggtggtgctcctaagggaccacaaatacgtga 779
>ref|XM_448941.1| Candida glabrata CBS138, CAGL0L03846 partial mRNA Length = 1635 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 388 aggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaat 444 ||||||||| |||||||||||| | || |||||||| |||||||| ||||||||||| Sbjct: 540 aggtgatggtccaattgtcttggttctagctccaaccagagaacttgctgttcaaat 596
>emb|X52104.1|HSP68A Human mRNA for p68 protein Length = 2330 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 773 tgtatctacggtggtgctcctaagggaccacaaatacgtga 813
>emb|X15729.1|HSNP68M Human mRNA for nuclear p68 protein Length = 2323 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 765 tgtatctacggtggtgctcctaagggaccacaaatacgtga 805
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 388 aggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaat 444 ||||||||| |||||||||||| | || |||||||| |||||||| ||||||||||| Sbjct: 443875 aggtgatggtccaattgtcttggttctagctccaaccagagaacttgctgttcaaat 443819
>emb|BX571764.1|HSM806634 Homo sapiens mRNA; cDNA DKFZp686J01190 (from clone DKFZp686J01190) Length = 3572 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 769 tgtatctacggtggtgctcctaagggaccacaaatacgtga 809
>gb|BT007642.1| Synthetic construct Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kDa) mRNA, partial cds Length = 1845 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 598 tgtatctacggtggtgctcctaagggaccacaaatacgtga 638
>gb|BT006943.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kDa) mRNA, complete cds Length = 1845 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 598 tgtatctacggtggtgctcctaagggaccacaaatacgtga 638
>emb|CR607012.1| full-length cDNA clone CS0DA009YD21 of Neuroblastoma of Homo sapiens (human) Length = 1800 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 265 tgtatctacggtggtgctcctaagggaccacaaatacgtga 305
>gb|AC138744.4| Homo sapiens chromosome 17, clone RP11-859E19, complete sequence Length = 177325 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 169364 tgtatctacggtggtgctcctaagggaccacaaatacgtga 169324
>gb|AY892740.1| Synthetic construct Homo sapiens clone FLH024742.01L DEAD box polypeptide 5 (DDX5) mRNA, partial cds Length = 1845 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 598 tgtatctacggtggtgctcctaagggaccacaaatacgtga 638
>gb|AY890256.1| Synthetic construct Homo sapiens clone FLH024746.01X DEAD box polypeptide 5 (DDX5) mRNA, complete cds Length = 1845 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 598 tgtatctacggtggtgctcctaagggaccacaaatacgtga 638
>gb|AY890255.1| Synthetic construct Homo sapiens clone FLH024745.01X DEAD box polypeptide 5 (DDX5) mRNA, complete cds Length = 1845 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 598 tgtatctacggtggtgctcctaagggaccacaaatacgtga 638
>gb|AF015812.1|AF015812 Homo sapiens RNA helicase p68 (HUMP68) gene, complete cds Length = 7834 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 3767 tgtatctacggtggtgctcctaagggaccacaaatacgtga 3807
>dbj|AB209919.1| Homo sapiens mRNA for Hypothetical protein DKFZp686J01190 variant protein Length = 3539 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 752 tgtatctacggtggtgctcctaagggaccacaaatacgtga 792
>gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, complete sequence Length = 188552 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||||||||| || ||||||||||||||||||||||| Sbjct: 149714 tgtatctacggtggtgctcctaagggaccacaaatacgtga 149754
>ref|NM_188251.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1485 Score = 58.0 bits (29), Expect = 3e-05 Identities = 95/117 (81%) Strand = Plus / Plus Query: 55 gttcgagaagagcttctacgtggaatgccccgccgtgcaggccatgtcggagacggaggt 114 ||||||||||| |||||||||||| | |||| ||||| | |||| ||||| |||||| Sbjct: 150 gttcgagaagaacttctacgtggagtccccctccgtggccggcatgacggaggaggaggt 209 Query: 115 ggcgcagtaccgtcagctccgggatatcaccgtggagggccgggaggtgcccaagcc 171 || | ||||| | | |||||| ||||||||||||||||| || ||||||||||| Sbjct: 210 ggaggcctaccggcgccgccgggagatcaccgtggagggccgcgacgtgcccaagcc 266
>emb|CR861259.1| Pongo pygmaeus mRNA; cDNA DKFZp459M043 (from clone DKFZp459M043) Length = 3724 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||| ||||| || ||||||||||||||||||||||| Sbjct: 768 tgtatctatggtggtgctcctaagggaccacaaatacgtga 808
>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1046G12 Length = 163533 Score = 58.0 bits (29), Expect = 3e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 55 gttcgagaagagcttctacgtggaatgccccgccgtgcaggccatgtcggagacggaggt 114 ||||||||||| |||||||||||| | |||| ||||| | |||| ||||| |||||| Sbjct: 1079 gttcgagaagaacttctacgtggagtccccctccgtggccggcatgacggaggaggaggt 1020 Query: 115 ggcgcagtaccgtcagctccgggatatcaccgtggagggccgggaggtgcccaagcc 171 || | ||||| | | |||||| ||||||||||||||||| || ||||||||||| Sbjct: 1019 ggaggcctaccggcgccgccgggagatcaccgtggagggccgcgacgtgcccaagcc 963
>dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0419B01 Length = 149610 Score = 58.0 bits (29), Expect = 3e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 55 gttcgagaagagcttctacgtggaatgccccgccgtgcaggccatgtcggagacggaggt 114 ||||||||||| |||||||||||| | |||| ||||| | |||| ||||| |||||| Sbjct: 44986 gttcgagaagaacttctacgtggagtccccctccgtggccggcatgacggaggaggaggt 44927 Query: 115 ggcgcagtaccgtcagctccgggatatcaccgtggagggccgggaggtgcccaagcc 171 || | ||||| | | |||||| ||||||||||||||||| || ||||||||||| Sbjct: 44926 ggaggcctaccggcgccgccgggagatcaccgtggagggccgcgacgtgcccaagcc 44870
>gb|BT016697.1| Zea mays clone Contig530 mRNA sequence Length = 1750 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 236 tttgtggagccaacgcctatccaagctcagggttggccgatggctttgaagggcagggac 295 |||||||| || || ||||||||| | || |||||||||||||| |||| ||| | ||| Sbjct: 253 tttgtggaacctacccctatccaatcgcaaggttggccgatggcattgagaggccgcgac 312 Query: 296 gtgattggtattgcagaaactggatctgggaaaac 330 | ||||| |||||||| || ||||| |||||||| Sbjct: 313 cttattggcattgcagagacaggatcagggaaaac 347 Score = 42.1 bits (21), Expect = 2.0 Identities = 63/77 (81%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaatacaggca 451 ||||| |||||||||||| | | ||||| ||| | ||||| |||||||| |||||| | Sbjct: 409 gatggtccaattgtcttggtgttagctcctacacgtgaacttgctgttcagatacagcaa 468 Query: 452 gaagctacaaagtttgg 468 ||||| || |||||||| Sbjct: 469 gaagcaaccaagtttgg 485
>dbj|AP006094.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39H01, TM0172, complete sequence Length = 127731 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 236 tttgtggagccaacgcctatccaagctcagggttggccgatggctttgaagggcagggac 295 ||||| ||||| || || ||||| |||||||||||||| |||||| ||| ||| ||||| Sbjct: 104909 tttgttgagcccactccaatccaggctcagggttggcccatggctctgacgggtagggat 104850 Query: 296 gtgattggtattgcagaaactgg 318 ||||||| ||||| || ||||| Sbjct: 104849 ttgattggcattgctgagactgg 104827
>ref|XR_002773.1| PREDICTED: Mus musculus hypothetical protein LOC670055 (LOC670055), mRNA Length = 2773 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||||||||||| Sbjct: 1070 actggatctgggaaaacactatctta 1095
>emb|AL645849.17| Mouse DNA sequence from clone RP23-14F5 on chromosome 11 Contains a DEAD box polypeptide 5 (Ddx5) pseudogene, the Gnb2-rs1 gene for guanine nucleotide binding protein, beta 2 related sequence 1, the Trim41 gene for tripartite motif-containing 41, a novel protein similar to CDK2 (cyclin-dependent kinase 2)-associated protein 1 (Cdkap1), the Trim7 gene for tripartite motif protein 7, the Ifi1 gene for interferon inducible protein 1, a novel gene (LOC277018), two novel genes and four CpG islands, complete sequence Length = 202559 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||||||||||| Sbjct: 13020 actggatctgggaaaacactatctta 12995
>emb|AJ010936.1|HSA010936 Homo sapiens ddx5-ps1 gene, partial Length = 334 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||||||||||| Sbjct: 262 actggatctgggaaaacactatctta 287
>gb|BC086320.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone IMAGE:6466882), partial cds Length = 2275 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 519 actggatctgggaaaacattatctta 544
>ref|NM_001016781.2| Xenopus tropicalis hypothetical protein LOC549535 (LOC549535), mRNA Length = 2430 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacg 531 |||||||| ||||| || ||||| |||||||||||||| Sbjct: 704 tgtatctatggtggggctcctaaaggaccacaaatacg 741
>gb|BC084159.1| Xenopus tropicalis cDNA clone IMAGE:7016603 Length = 4542 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacg 531 |||||||| ||||| || ||||| |||||||||||||| Sbjct: 704 tgtatctatggtggggctcctaaaggaccacaaatacg 741
>gb|BC080992.1| Xenopus laevis hypothetical protein LOC398649, mRNA (cDNA clone MGC:80019 IMAGE:3401294), complete cds Length = 2818 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacg 531 |||||||| ||||| || ||||| |||||||||||||| Sbjct: 672 tgtatctatggtggggctcctaaaggaccacaaatacg 709
>ref|NM_007840.2| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), mRNA Length = 3521 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 597 actggatctgggaaaacattatctta 622
>gb|BC054236.1| Xenopus laevis hypothetical protein LOC398649, mRNA (cDNA clone IMAGE:6880238), partial cds Length = 1336 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacg 531 |||||||| ||||| || ||||| |||||||||||||| Sbjct: 651 tgtatctatggtggggctcctaaaggaccacaaatacg 688
>gb|BC062916.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone IMAGE:6827275), partial cds Length = 3645 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 581 actggatctgggaaaacattatctta 606
>ref|XM_946895.1| Theileria annulata strain Ankara ATP-dependent RNA helicase (TA14795) partial mRNA Length = 1368 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 407 ttgatccttgctccaacaagagaact 432 ||||||||||||||||| |||||||| Sbjct: 337 ttgatccttgctccaactagagaact 362
>emb|X65627.1|MMHELI M.musculus mRNA TNZ2 for p68 RNA helicase Length = 2318 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 578 actggatctgggaaaacattatctta 603
>dbj|AK129022.1| Mus musculus cDNA fis, clone TRACH3036683, highly similar to Probable RNA-dependent helicase p68 Length = 3602 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 596 actggatctgggaaaacattatctta 621
>dbj|AK132779.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4922505M03 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, full insert sequence Length = 2375 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 643 actggatctgggaaaacattatctta 668
>dbj|AK135173.1| Mus musculus 12 days embryo female ovary cDNA, RIKEN full-length enriched library, clone:6620402N06 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, full insert sequence Length = 3522 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 597 actggatctgggaaaacattatctta 622
>dbj|AK166698.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0003N03 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, full insert sequence Length = 2461 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 729 actggatctgggaaaacattatctta 754
>dbj|AK166045.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730030M03 product:DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, full insert sequence Length = 3521 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 597 actggatctgggaaaacattatctta 622
>dbj|AK088887.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430029P14 product:DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 5, full insert sequence Length = 2329 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 597 actggatctgggaaaacattatctta 622
>gb|DQ336393.1| Elephas maximus DEAD/H box polypeptide (DBY) gene, partial sequence Length = 458 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaacaagagaactggctgttcaaat 444 |||||||||||||||||||| ||||| Sbjct: 284 ccaacaagagaactggctgtacaaat 309
>dbj|AK044792.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930106P08 product:DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 5, full insert sequence Length = 2329 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 596 actggatctgggaaaacattatctta 621
>dbj|AK076018.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610035N22 product:DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 5, full insert sequence Length = 2338 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 598 actggatctgggaaaacattatctta 623
>ref|NM_001007613.1| Rattus norvegicus ddx5 gene (Ddx5), mRNA Length = 2508 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 648 actggatctgggaaaacattatctta 673
>gb|BC079036.1| Rattus norvegicus ddx5 gene, mRNA (cDNA clone MGC:93965 IMAGE:7114313), complete cds Length = 2508 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 648 actggatctgggaaaacattatctta 673
>emb|AJ010940.1|RNO010940 Rattus norvegicus ddx5-ps1 pseudogene, partial Length = 336 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 264 actggatctgggaaaacattatctta 289
>emb|CR855694.2| Xenopus tropicalis finished cDNA, clone TGas068f07 Length = 2430 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacg 531 |||||||| ||||| || ||||| |||||||||||||| Sbjct: 704 tgtatctatggtggggctcctaaaggaccacaaatacg 741
>gb|BC046554.1| Mus musculus cDNA clone IMAGE:4973650 Length = 2321 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 574 actggatctgggaaaacattatctta 599
>gb|BC108369.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone MGC:118083 IMAGE:6312791), complete cds Length = 2236 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatctta 339 |||||||||||||||||| ||||||| Sbjct: 441 actggatctgggaaaacattatctta 466
>gb|AC149403.2| Phakopsora pachyrhizi clone JGIAFNA-61H19, complete sequence Length = 36597 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 392 gatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaat 444 |||||||| ||||| |||||| | || || ||| | ||||||||||||||||| Sbjct: 23701 gatggccctattgtattgatcttagcacccacacgggaactggctgttcaaat 23649
>gb|AY391418.1| Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (DDX5) mRNA, complete cds Length = 2482 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 245 ccaacgcctatccaagctcagggttggcc 273 ||||| ||||||||||||||||| ||||| Sbjct: 417 ccaacccctatccaagctcaggggtggcc 445
>ref|NM_212612.1| Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (ddx5), mRNA Length = 2482 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 245 ccaacgcctatccaagctcagggttggcc 273 ||||| ||||||||||||||||| ||||| Sbjct: 417 ccaacccctatccaagctcaggggtggcc 445
>gb|BC082849.1| Xenopus laevis p68 RNA helicase, mRNA (cDNA clone MGC:81559 IMAGE:6862986), complete cds Length = 2177 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 542 agaggagttgaaatcgtcattgcaacacc 570 ||||||||||||||| |||||||||||| Sbjct: 679 agaggagttgaaatctgcattgcaacacc 707
>gb|BC063223.1| Xenopus tropicalis DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone MGC:76265 IMAGE:5379210), complete cds Length = 2192 Score = 42.1 bits (21), Expect = 2.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 506 ggagcacctaagggaccacaaatacgtgacctcaggagaggagttgaaatcgtcattgca 565 ||||| || ||||||||||| |||||||| || ||||||||||||||| |||||| Sbjct: 622 ggagctccaaagggaccacagatacgtgatctagaaagaggagttgaaatctgcattgct 681 Query: 566 acacc 570 ||||| Sbjct: 682 acacc 686
>ref|XM_361961.1| Magnaporthe grisea 70-15 hypothetical protein (MG04406.4) partial cds Length = 7962 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 gaaactggatctgggaaaaca 331 ||||||||||||||||||||| Sbjct: 1288 gaaactggatctgggaaaaca 1308
>ref|XM_456137.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F23716g predicted mRNA Length = 1665 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 388 aggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaat 444 ||||||||| |||||||| ||| | | |||||||| |||||| | ||||||||||| Sbjct: 549 aggtgatggtccaattgttttggtattggctccaaccagagaattagctgttcaaat 605
>gb|BC067585.1| Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone MGC:85704 IMAGE:6963939), complete cds Length = 2245 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 245 ccaacgcctatccaagctcagggttggcc 273 ||||| ||||||||||||||||| ||||| Sbjct: 438 ccaacccctatccaagctcaggggtggcc 466
>gb|AC165060.2| Phakopsora pachyrhizi clone JGIAFNA-205B5, complete sequence Length = 44829 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaat 444 |||||||| ||||| |||||| | || || ||| | ||||||||||||||||| Sbjct: 20583 gatggccctattgtattgatcttagcacccacacgggaactggctgttcaaat 20635
>gb|BC047981.1| Xenopus laevis similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kDa), mRNA (cDNA clone MGC:53795 IMAGE:5541855), complete cds Length = 2158 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 542 agaggagttgaaatcgtcattgcaacacc 570 ||||||||||||||| |||||||||||| Sbjct: 663 agaggagttgaaatctgcattgcaacacc 691
>ref|XM_719206.1| Plasmodium yoelii yoelii str. 17XNL U5 snRNP 100 kD protein (PY04051) partial mRNA Length = 2904 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 299 attggtattgcagaaactggatctgggaaaaca 331 ||||| ||||| |||||||||||||| |||||| Sbjct: 1750 attggaattgctgaaactggatctggaaaaaca 1782
>emb|Z71388.1|SCYNL112W S.cerevisiae chromosome XIV reading frame ORF YNL112w Length = 3740 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 416 gctccaacaagagaactggctgttcaaat 444 |||||||| |||||| ||||||||||||| Sbjct: 1016 gctccaactagagaattggctgttcaaat 1044
>emb|Z69382.1|SCCXIV38K S.cerevisiae 37,800 bp segment of chromosome XIV Length = 37800 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 416 gctccaacaagagaactggctgttcaaat 444 |||||||| |||||| ||||||||||||| Sbjct: 30156 gctccaactagagaattggctgttcaaat 30184
>emb|X52649.1|SCP68 S.cerevisiae p68 gene Length = 2733 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 416 gctccaacaagagaactggctgttcaaat 444 |||||||| |||||| ||||||||||||| Sbjct: 637 gctccaactagagaattggctgttcaaat 665
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Minus Query: 388 aggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaat 444 ||||||||| |||||||| ||| | | |||||||| |||||| | ||||||||||| Sbjct: 2217581 aggtgatggtccaattgttttggtattggctccaaccagagaattagctgttcaaat 2217525
>ref|NM_203898.1| Xenopus tropicalis DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (ddx5), mRNA Length = 2192 Score = 42.1 bits (21), Expect = 2.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 506 ggagcacctaagggaccacaaatacgtgacctcaggagaggagttgaaatcgtcattgca 565 ||||| || ||||||||||| |||||||| || ||||||||||||||| |||||| Sbjct: 622 ggagctccaaagggaccacagatacgtgatctagaaagaggagttgaaatctgcattgct 681 Query: 566 acacc 570 ||||| Sbjct: 682 acacc 686
>emb|BX936324.6| Zebrafish DNA sequence from clone CH211-74F16 in linkage group 3, complete sequence Length = 154312 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 245 ccaacgcctatccaagctcagggttggcc 273 ||||| ||||||||||||||||| ||||| Sbjct: 58048 ccaacccctatccaagctcaggggtggcc 58020
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 tcaccgtggagggccgggaggtgcc 165 ||||||||||||||||| ||||||| Sbjct: 2793394 tcaccgtggagggccggcaggtgcc 2793418
>dbj|AB169223.1| Macaca fascicularis testis cDNA, clone: QtsA-18104, similar to human DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (DDX5), mRNA, RefSeq: NM_004396.2 Length = 2182 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 602 tgtatctatggtggtgctcccaagggaccccaaatacgtga 642
>dbj|AB169157.1| Macaca fascicularis testis cDNA, clone: QtsA-17658, similar to human DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (DDX5), mRNA, RefSeq: NM_004396.2 Length = 2416 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 494 tgtatctacggtggagcacctaagggaccacaaatacgtga 534 |||||||| ||||| || || |||||||| ||||||||||| Sbjct: 850 tgtatctatggtggtgctcccaagggaccccaaatacgtga 890
>gb|AF218580.1|AF218580 Xenopus laevis p68 RNA helicase mRNA, complete cds Length = 2207 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 542 agaggagttgaaatcgtcattgcaacacc 570 ||||||||||||||| |||||||||||| Sbjct: 705 agaggagttgaaatctgcattgcaacacc 733
>emb|BX085195.5| Zebrafish DNA sequence from clone DKEY-226A5 in linkage group 3, complete sequence Length = 227111 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 245 ccaacgcctatccaagctcagggttggcc 273 ||||| ||||||||||||||||| ||||| Sbjct: 155137 ccaacccctatccaagctcaggggtggcc 155165
>gb|AY110750.1| Zea mays CL9052_1 mRNA sequence Length = 1387 Score = 42.1 bits (21), Expect = 2.0 Identities = 63/77 (81%) Strand = Plus / Minus Query: 392 gatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaatacaggca 451 ||||| |||||||||||| | | ||||| ||| | ||||| |||||||| |||||| | Sbjct: 1297 gatggtccaattgtcttggtgttagctcctacacgtgaacttgctgttcagatacagcaa 1238 Query: 452 gaagctacaaagtttgg 468 ||||| || |||||||| Sbjct: 1237 gaagcaaccaagtttgg 1221
>emb|CR848548.2| Xenopus tropicalis finished cDNA, clone TEgg028e13 Length = 2152 Score = 42.1 bits (21), Expect = 2.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 506 ggagcacctaagggaccacaaatacgtgacctcaggagaggagttgaaatcgtcattgca 565 ||||| || ||||||||||| |||||||| || ||||||||||||||| |||||| Sbjct: 631 ggagctccaaagggaccacagatacgtgatctagaaagaggagttgaaatctgcattgct 690 Query: 566 acacc 570 ||||| Sbjct: 691 acacc 695
>gb|AC154130.1| Tribolium castaneum BAC T.cast_C11O3 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 148539 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 tgcagaaactggatctgggaaaac 330 |||| ||||||||||||||||||| Sbjct: 37474 tgcacaaactggatctgggaaaac 37497
>ref|NM_177069.2| Mus musculus RIKEN cDNA E330009P21 gene (E330009P21Rik), mRNA Length = 1487 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 638 gatggcccaattgtcttgat 657
>gb|AY723847.1| Saccharomyces cerevisiae clone FLH004944.01X YLR276C gene, complete cds Length = 1785 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 cttgctccaacaagagaactggct 436 |||| ||||||||||||||||||| Sbjct: 298 cttgttccaacaagagaactggct 321
>ref|XM_613184.2| PREDICTED: Bos taurus similar to Probable RNA-dependent helicase p68 (DEAD-box protein p68) (DEAD-box protein 5), transcript variant 1 (LOC533700), mRNA Length = 2468 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 aagggaccacaaatacgtga 534 |||||||||||||||||||| Sbjct: 921 aagggaccacaaatacgtga 940
>gb|BC068766.1| Xenopus laevis hypothetical protein MGC81281, mRNA (cDNA clone MGC:81281 IMAGE:6631829), complete cds Length = 3614 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gaaactggatctgggaaaac 330 |||||||||||||||||||| Sbjct: 458 gaaactggatctgggaaaac 477
>ref|NM_026360.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (Ddx47), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcagaaactggatctgggaaaaca 331 |||||||| ||||||||||||||| Sbjct: 225 gcagaaacgggatctgggaaaaca 248
>ref|NM_175214.3| Mus musculus kinesin family member 27 (Kif27), mRNA Length = 4462 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 aaactggatctgggaaaaca 331 |||||||||||||||||||| Sbjct: 254 aaactggatctgggaaaaca 273
>ref|XM_705616.1| Candida albicans SC5314 putative nonsense-mediated decay helicase Dbp2 (CaO19.171), mRNA Length = 1332 Score = 40.1 bits (20), Expect = 7.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 266 ggttggccgatggctttgaagggcagggacgtgattggtattgc 309 |||||||| |||||||||| || ||||| ||||||||||||| Sbjct: 469 ggttggcctatggctttgagtggtagggatatgattggtattgc 512
>ref|XM_705602.1| Candida albicans SC5314 putative nonsense-mediated decay helicase Dbp2 (CaO19.7804), mRNA Length = 1332 Score = 40.1 bits (20), Expect = 7.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 266 ggttggccgatggctttgaagggcagggacgtgattggtattgc 309 |||||||| |||||||||| || ||||| ||||||||||||| Sbjct: 469 ggttggcctatggctttgagtggtagggatatgattggtattgc 512
>gb|BC060168.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, mRNA (cDNA clone IMAGE:6826538), partial cds Length = 4039 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcagaaactggatctgggaaaaca 331 |||||||| ||||||||||||||| Sbjct: 212 gcagaaacgggatctgggaaaaca 235
>ref|XM_651823.1| Entamoeba histolytica HM-1:IMSS DEAD/DEAH box helicase, putative (6.t00035) partial mRNA Length = 1608 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 300 ttggtattgcagaaactggatctgggaaaaca 331 ||||||||||||| |||||||| || |||||| Sbjct: 581 ttggtattgcagagactggatcaggtaaaaca 612
>ref|XM_759104.1| Theileria parva strain Muguga chromosome 4 RNA helicase (TP04_0562) partial mRNA Length = 1908 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 attgcagaaactggatctgg 324 |||||||||||||||||||| Sbjct: 757 attgcagaaactggatctgg 776
>gb|AY274092.1| Coccyzus erythropthalmus phosphoenolpyruvate carboxykinase (PEPCK) gene, exon 9, intron 9, exon 10 and partial cds Length = 658 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 507 gagcacctaagggaccacaaatac 530 ||||| |||||||||||||||||| Sbjct: 485 gagcagctaagggaccacaaatac 508
>emb|AL450389.12| Human DNA sequence from clone RP5-929G5 on chromosome 1 Contains the VANGL1 gene for vang-like 1 (van gogh, Drosophila), the 3' end of the CASQ2 gene for calsequestrin 2 (cardiac muscle) and one CpG island, complete sequence Length = 101623 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ggctgttcaaatacaggcag 452 |||||||||||||||||||| Sbjct: 48002 ggctgttcaaatacaggcag 48021
>ref|XM_505193.1| Yarrowia lipolytica CLIB122, YALI0F09141g predicted mRNA Length = 3660 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 tgaagggcagggacgtgattggta 305 ||||||||||||||| |||||||| Sbjct: 1018 tgaagggcagggacgagattggta 995
>emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in linkage group 21, complete sequence Length = 243457 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 425 agagaactggctgttcaaatacag 448 |||||||| ||||||||||||||| Sbjct: 118236 agagaacttgctgttcaaatacag 118213
>gb|BC099397.1| Mus musculus RIKEN cDNA E330009P21 gene, mRNA (cDNA clone MGC:117557 IMAGE:30936381), complete cds Length = 1497 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 619 gatggcccaattgtcttgat 638
>gb|BC095944.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, mRNA (cDNA clone MGC:106325 IMAGE:4935970), complete cds Length = 1762 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcagaaactggatctgggaaaaca 331 |||||||| ||||||||||||||| Sbjct: 209 gcagaaacgggatctgggaaaaca 232
>emb|BX647482.1|HSM807628 Homo sapiens genomic DNA; cDNA DKFZp686L02110 (from clone DKFZp686L02110) Length = 8436 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 gatggctttgaagggcaggg 293 |||||||||||||||||||| Sbjct: 2589 gatggctttgaagggcaggg 2608
>emb|AJ719824.1| Gallus gallus mRNA for hypothetical protein, clone 6o10 Length = 2510 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcagaaactggatctgggaaaaca 331 ||||||||||| |||||||||||| Sbjct: 224 gcagaaactggctctgggaaaaca 247
>ref|NM_001007853.1| Gallus gallus DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (DDX47), mRNA Length = 2510 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcagaaactggatctgggaaaaca 331 ||||||||||| |||||||||||| Sbjct: 224 gcagaaactggctctgggaaaaca 247
>gb|AY128786.1| Arabidopsis thaliana unknown protein (At1g55150) mRNA, complete cds Length = 1539 Score = 40.1 bits (20), Expect = 7.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 389 ggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaatacag 448 ||||| |||||||| |||||| | |||||||| || | ||||||||||| || |||||| Sbjct: 508 ggtgacggcccaatcgtcttggttcttgctcccactcgtgaactggctgtgcagatacag 567
>gb|AC105094.6| Homo sapiens chromosome 18, clone RP11-1096D5, complete sequence Length = 210317 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 caaatacgtgacctcaggag 543 |||||||||||||||||||| Sbjct: 102923 caaatacgtgacctcaggag 102942
>gb|AC110997.4| Homo sapiens chromosome 18, clone RP11-56J20, complete sequence Length = 160456 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 caaatacgtgacctcaggag 543 |||||||||||||||||||| Sbjct: 116420 caaatacgtgacctcaggag 116439
>dbj|AK136136.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420462A02 product:Similar to F-box protein FBX12 homolog [Mus musculus], full insert sequence Length = 1755 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 634 gatggcccaattgtcttgat 653
>dbj|AK135949.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420440J21 product:Similar to F-box protein FBX12 homolog [Mus musculus], full insert sequence Length = 2244 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 638 gatggcccaattgtcttgat 657
>gb|AC106746.2| Homo sapiens chromosome 5 clone RP11-149E17, complete sequence Length = 179868 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tacaaagtttggatcatact 476 |||||||||||||||||||| Sbjct: 173426 tacaaagtttggatcatact 173445
>gb|L80215.1|HUM69DC8Z Homo sapiens (subclone 1_a7 from P1 H69) DNA sequence Length = 3296 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tacaaagtttggatcatact 476 |||||||||||||||||||| Sbjct: 28 tacaaagtttggatcatact 47
>ref|NM_199036.1| Mus musculus F-box and WD-40 domain protein 15 (Fbxw15), mRNA Length = 1488 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 637 gatggcccaattgtcttgat 656
>dbj|AK010310.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2400010F03 product:DEAD BOX PROTEIN homolog [Homo sapiens], full insert sequence Length = 1752 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcagaaactggatctgggaaaaca 331 |||||||| ||||||||||||||| Sbjct: 225 gcagaaacgggatctgggaaaaca 248
>gb|AC154437.2| Mus musculus BAC clone RP24-194D17 from chromosome 13, complete sequence Length = 180558 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 aaactggatctgggaaaaca 331 |||||||||||||||||||| Sbjct: 95822 aaactggatctgggaaaaca 95803
>dbj|AK087902.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330038M07 product:similar to F-box protein FBX12 (Fragment) [Mus musculus], full insert sequence Length = 910 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 636 gatggcccaattgtcttgat 655
>gb|DQ067445.1| Mus musculus early ovarian protein-1 (Eop1) mRNA, complete cds Length = 1401 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 604 gatggcccaattgtcttgat 623
>dbj|AK087710.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330009P21 product:similar to F-BOX PROTEIN FBX12 (FRAGMENT) [Mus musculus], full insert sequence Length = 1487 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 638 gatggcccaattgtcttgat 657
>dbj|AK087669.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330001M05 product:similar to F-BOX PROTEIN FBX12 (FRAGMENT) [Mus musculus], full insert sequence Length = 1488 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gatggcccaattgtcttgat 411 |||||||||||||||||||| Sbjct: 637 gatggcccaattgtcttgat 656
>gb|BC103318.1| Bos taurus cDNA clone IMAGE:7941432, partial cds Length = 2409 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 aagggaccacaaatacgtga 534 |||||||||||||||||||| Sbjct: 790 aagggaccacaaatacgtga 809
>dbj|AK076982.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930588A18 product:DEAD BOX PROTEIN homolog [Homo sapiens], full insert sequence Length = 1748 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcagaaactggatctgggaaaaca 331 |||||||| ||||||||||||||| Sbjct: 217 gcagaaacgggatctgggaaaaca 240
>ref|NM_001039431.1| Tribolium castaneum vasa RNA helicase (vasa), mRNA Length = 2183 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 tgcagaaactggatctgggaaaac 330 |||| ||||||||||||||||||| Sbjct: 701 tgcacaaactggatctgggaaaac 724
>tpg|BK001056.1| TPA: TPA_exp: Mus musculus kinesin-related protein KIF27A mRNA, complete cds Length = 4462 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 aaactggatctgggaaaaca 331 |||||||||||||||||||| Sbjct: 254 aaactggatctgggaaaaca 273
>emb|BX813460.1|CNS0AC9L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZH04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1731 Score = 40.1 bits (20), Expect = 7.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 389 ggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaatacag 448 ||||| |||||||| |||||| | |||||||| || | ||||||||||| || |||||| Sbjct: 636 ggtgacggcccaatcgtcttggttcttgctcccactcgtgaactggctgtgcagatacag 695
>gb|AC147286.3| Pan troglodytes BAC clone RP43-75F15 from chromosome 7, complete sequence Length = 167461 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gatggctttgaagggcaggg 293 |||||||||||||||||||| Sbjct: 54303 gatggctttgaagggcaggg 54284
>gb|AC073944.6|AC073944 Arabidopsis thaliana chromosome 1 BAC T7N22 genomic sequence, complete sequence Length = 44540 Score = 40.1 bits (20), Expect = 7.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 389 ggtgatggcccaattgtcttgatccttgctccaacaagagaactggctgttcaaatacag 448 ||||| |||||||| |||||| | |||||||| || | ||||||||||| || |||||| Sbjct: 35499 ggtgacggcccaatcgtcttggttcttgctcccactcgtgaactggctgtgcagatacag 35558
>dbj|AK196692.1| Mus musculus cDNA, clone:Y1G0122J24, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000032326, based on BLAT search Length = 387 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcagaaactggatctgggaaaaca 331 |||||||| ||||||||||||||| Sbjct: 151 gcagaaacgggatctgggaaaaca 174
>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete sequence Length = 216656 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 tacaggcagaagctacaaag 463 |||||||||||||||||||| Sbjct: 146934 tacaggcagaagctacaaag 146953
>gb|AC005534.2|AC005534 Homo sapiens PAC clone RP5-982E9 from 7q35-q36, complete sequence Length = 158219 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 gatggctttgaagggcaggg 293 |||||||||||||||||||| Sbjct: 85135 gatggctttgaagggcaggg 85154
>gb|AC131718.5| Mus musculus BAC clone RP23-171B16 from 6, complete sequence Length = 199299 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 gcagaaactggatctgggaaaaca 331 |||||||| ||||||||||||||| Sbjct: 196376 gcagaaacgggatctgggaaaaca 196353
>emb|AJ010934.1|RNO010934 Rattus norvegicus ddx5 gene, exons 2 to 5, partial Length = 894 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatct 337 |||||||||||||||||| ||||| Sbjct: 719 actggatctgggaaaacattatct 742
>gb|AY887136.1| Tribolium castaneum vasa RNA helicase mRNA, complete cds Length = 2183 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 tgcagaaactggatctgggaaaac 330 |||| ||||||||||||||||||| Sbjct: 701 tgcacaaactggatctgggaaaac 724
>gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, complete sequence Length = 213473 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 gcagaaactggatctgggaaaaca 331 |||||||| ||||||||||||||| Sbjct: 110852 gcagaaacgggatctgggaaaaca 110829
>gb|U17245.1|YSCL9328 Saccharomyces cerevisiae chromosome XII cosmid 9328 Length = 14827 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 413 cttgctccaacaagagaactggct 436 |||| ||||||||||||||||||| Sbjct: 10486 cttgttccaacaagagaactggct 10463
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 tgaagggcagggacgtgattggta 305 ||||||||||||||| |||||||| Sbjct: 1276550 tgaagggcagggacgagattggta 1276527
>gb|L81906.1|HSL81906 Homo sapiens (subclone 2_f8 from P1 H69) DNA sequence, complete sequence Length = 4059 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tacaaagtttggatcatact 476 |||||||||||||||||||| Sbjct: 4006 tacaaagtttggatcatact 4025
>gb|AC001214.1|HSAC001214 Homo sapiens (subclone 1_a7 from P1 H69) DNA sequence, complete sequence Length = 3296 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tacaaagtttggatcatact 476 |||||||||||||||||||| Sbjct: 28 tacaaagtttggatcatact 47
>emb|AL606529.9| Human DNA sequence from clone RP4-744B2 on chromosome 1, complete sequence Length = 66822 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ggctgttcaaatacaggcag 452 |||||||||||||||||||| Sbjct: 15927 ggctgttcaaatacaggcag 15946
>emb|X94313.1|MMHLR1 M.musculus Hlr1 gene Length = 4670 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 actggatctgggaaaacactatct 337 |||||||||||||||||| ||||| Sbjct: 4078 actggatctgggaaaacattatct 4101
>dbj|AB048845.1| Aurelia aurita mRNA for PL10-related protein CnPL10, partial cds Length = 364 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 cttgctccaacaagagaact 432 |||||||||||||||||||| Sbjct: 131 cttgctccaacaagagaact 150
>emb|AL603664.16| Mouse DNA sequence from clone RP23-247J12 on chromosome 11, complete sequence Length = 158098 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 actggatctgggaaaacactatct 337 |||||||||||||||||| ||||| Sbjct: 141812 actggatctgggaaaacattatct 141789 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,866,649 Number of Sequences: 3902068 Number of extensions: 3866649 Number of successful extensions: 91014 Number of sequences better than 10.0: 144 Number of HSP's better than 10.0 without gapping: 141 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 90599 Number of HSP's gapped (non-prelim): 400 length of query: 571 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 548 effective length of database: 17,143,297,704 effective search space: 9394527141792 effective search space used: 9394527141792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)