| Clone Name | baal2m13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1854 Score = 315 bits (159), Expect = 9e-83 Identities = 247/275 (89%), Gaps = 1/275 (0%) Strand = Plus / Plus Query: 324 gggatgggcatggcgaaagctggtgctgccaaggtttcggaagttagctcaattctgggt 383 |||||||| |||||||||| | || ||||||||||| ||||| ||||||||| |||| Sbjct: 301 gggatgggtgtggcgaaagccagcgccgccaaggtttcagaagtaagctcaattttgggg 360 Query: 384 agggctggtactgttgggcttggcaaagcagtggacgtactagacacacttggcagtagc 443 |||||| |||||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct: 361 agggctagtactgttgggcttgggaaagcagtggaagtgctagacacacttggtagtagc 420 Query: 444 atgacaaatttgaatttaaatagtggttttggatcaggcactacaacaaagggcaacaaa 503 ||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 421 atggcaaatttgaatataaatagtggatttggatcaggaactacaacaaagggcaacaaa 480 Query: 504 atatccattttggcatttgaggttgctaataccatagtgaaaggttgcaattttgatgcg 563 ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||| Sbjct: 481 atatctattttagcatttgaggttgccaatacaatagtcaaaggttgcaa-tttgatgcg 539 Query: 564 agctctttcaaaagagagcgtaaaacatttaaaag 598 |||||||||||||||||| |||| |||||||||| Sbjct: 540 ggctctttcaaaagagagcataaagcatttaaaag 574 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 59 tggcgcggtgaaggaggagaggaagacggtggtggaggaggctgctgccaagaggacgca 118 ||||| || ||||||||||||||||||||| | | |||||||||||||||||||| || Sbjct: 108 tggcgtggggaaggaggagaggaagacggttgcgagggaggctgctgccaagaggatcca 167 Query: 119 cgagcagcagcagc 132 ||||||||||||| Sbjct: 168 ggagcagcagcagc 181 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 2 caagtcgcccagcgacaccacgcttggccccgaccg 37 |||||||||||||||||||||||| || |||||||| Sbjct: 36 caagtcgcccagcgacaccacgctcggtcccgaccg 71
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 301 bits (152), Expect = 1e-78 Identities = 222/244 (90%), Gaps = 1/244 (0%) Strand = Plus / Minus Query: 355 aggtttcggaagttagctcaattctgggtagggctggtactgttgggcttggcaaagcag 414 ||||||| ||||| ||||||||| |||| |||||| |||||||||||||||| ||||||| Sbjct: 37897549 aggtttcagaagtaagctcaattttggggagggctagtactgttgggcttgggaaagcag 37897490 Query: 415 tggacgtactagacacacttggcagtagcatgacaaatttgaatttaaatagtggttttg 474 |||| || |||||||||||||| ||||||||| ||||||||||| |||||||||| |||| Sbjct: 37897489 tggaagtgctagacacacttggtagtagcatggcaaatttgaatataaatagtggatttg 37897430 Query: 475 gatcaggcactacaacaaagggcaacaaaatatccattttggcatttgaggttgctaata 534 ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct: 37897429 gatcaggaactacaacaaagggcaacaaaatatctattttagcatttgaggttgccaata 37897370 Query: 535 ccatagtgaaaggttgcaattttgatgcgagctctttcaaaagagagcgtaaaacattta 594 | ||||| ||||||||||| ||||||||| |||||||||||||||||| |||| |||||| Sbjct: 37897369 caatagtcaaaggttgcaa-tttgatgcgggctctttcaaaagagagcataaagcattta 37897311 Query: 595 aaag 598 |||| Sbjct: 37897310 aaag 37897307 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 59 tggcgcggtgaaggaggagaggaagacggtggtggaggaggctgctgccaagaggacgca 118 ||||| || ||||||||||||||||||||| | | |||||||||||||||||||| || Sbjct: 37899310 tggcgtggggaaggaggagaggaagacggttgcgagggaggctgctgccaagaggatcca 37899251 Query: 119 cgagcagcagcagc 132 ||||||||||||| Sbjct: 37899250 ggagcagcagcagc 37899237 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 2 caagtcgcccagcgacaccacgcttggccccgaccg 37 |||||||||||||||||||||||| || |||||||| Sbjct: 37899382 caagtcgcccagcgacaccacgctcggtcccgaccg 37899347 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||||| ||||||||| Sbjct: 40327186 agcagcagcagccggcacagcaac 40327209
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 301 bits (152), Expect = 1e-78 Identities = 222/244 (90%), Gaps = 1/244 (0%) Strand = Plus / Minus Query: 355 aggtttcggaagttagctcaattctgggtagggctggtactgttgggcttggcaaagcag 414 ||||||| ||||| ||||||||| |||| |||||| |||||||||||||||| ||||||| Sbjct: 118905 aggtttcagaagtaagctcaattttggggagggctagtactgttgggcttgggaaagcag 118846 Query: 415 tggacgtactagacacacttggcagtagcatgacaaatttgaatttaaatagtggttttg 474 |||| || |||||||||||||| ||||||||| ||||||||||| |||||||||| |||| Sbjct: 118845 tggaagtgctagacacacttggtagtagcatggcaaatttgaatataaatagtggatttg 118786 Query: 475 gatcaggcactacaacaaagggcaacaaaatatccattttggcatttgaggttgctaata 534 ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct: 118785 gatcaggaactacaacaaagggcaacaaaatatctattttagcatttgaggttgccaata 118726 Query: 535 ccatagtgaaaggttgcaattttgatgcgagctctttcaaaagagagcgtaaaacattta 594 | ||||| ||||||||||| ||||||||| |||||||||||||||||| |||| |||||| Sbjct: 118725 caatagtcaaaggttgcaa-tttgatgcgggctctttcaaaagagagcataaagcattta 118667 Query: 595 aaag 598 |||| Sbjct: 118666 aaag 118663 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 59 tggcgcggtgaaggaggagaggaagacggtggtggaggaggctgctgccaagaggacgca 118 ||||| || ||||||||||||||||||||| | | |||||||||||||||||||| || Sbjct: 120666 tggcgtggggaaggaggagaggaagacggttgcgagggaggctgctgccaagaggatcca 120607 Query: 119 cgagcagcagcagc 132 ||||||||||||| Sbjct: 120606 ggagcagcagcagc 120593 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 2 caagtcgcccagcgacaccacgcttggccccgaccg 37 |||||||||||||||||||||||| || |||||||| Sbjct: 120738 caagtcgcccagcgacaccacgctcggtcccgaccg 120703
>ref|XM_475271.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1923 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 345 ggtgctgccaaggtttcggaagttagctcaattctgggtagggctggtactgttgggctt 404 |||||||| |||||||| ||||| ||||| || | || |||||||| |||||||| ||| Sbjct: 298 ggtgctgcaaaggtttcagaagtgagctcccttttaggcagggctggcactgttggtctt 357 Query: 405 ggcaaagcagtggacgtactagacacacttggcagtagcatg 446 || ||||||||||| || ||||| || ||||| ||||||||| Sbjct: 358 ggaaaagcagtggaggttctagatacgcttggtagtagcatg 399
>dbj|AK121670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067N19, full insert sequence Length = 2746 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 345 ggtgctgccaaggtttcggaagttagctcaattctgggtagggctggtactgttgggctt 404 |||||||| |||||||| ||||| ||||| || | || |||||||| |||||||| ||| Sbjct: 811 ggtgctgcaaaggtttcagaagtgagctcccttttaggcagggctggcactgttggtctt 870 Query: 405 ggcaaagcagtggacgtactagacacacttggcagtagcatg 446 || ||||||||||| || ||||| || ||||| ||||||||| Sbjct: 871 ggaaaagcagtggaggttctagatacgcttggtagtagcatg 912
>dbj|AK064776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B01, full insert sequence Length = 2805 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 345 ggtgctgccaaggtttcggaagttagctcaattctgggtagggctggtactgttgggctt 404 |||||||| |||||||| ||||| ||||| || | || |||||||| |||||||| ||| Sbjct: 788 ggtgctgcaaaggtttcagaagtgagctcccttttaggcagggctggcactgttggtctt 847 Query: 405 ggcaaagcagtggacgtactagacacacttggcagtagcatg 446 || ||||||||||| || ||||| || ||||| ||||||||| Sbjct: 848 ggaaaagcagtggaggttctagatacgcttggtagtagcatg 889
>gb|AC148758.19| Medicago truncatula clone mth2-50l17, complete sequence Length = 128831 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 408 aaagcagtggacgtactagacacacttggcagtagcatgacaaatttgaatt 459 |||||||| ||||| |||||||||||||| ||||||||||||||||| |||| Sbjct: 11771 aaagcagttgacgttctagacacacttgggagtagcatgacaaatttaaatt 11822
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 63.9 bits (32), Expect = 6e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 355 aggtttcggaagttagctcaattctgggtagggctggtactgttgggcttggcaaagcag 414 ||||||| ||||| ||||| || | || |||||||| |||||||| ||||| ||||||| Sbjct: 105034 aggtttcagaagtgagctcccttttaggcagggctggcactgttggtcttggaaaagcag 105093 Query: 415 tggacgtactagacacacttggcagtagcatg 446 |||| || ||||| || ||||| ||||||||| Sbjct: 105094 tggaggttctagatacgcttggtagtagcatg 105125
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 6e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 355 aggtttcggaagttagctcaattctgggtagggctggtactgttgggcttggcaaagcag 414 ||||||| ||||| ||||| || | || |||||||| |||||||| ||||| ||||||| Sbjct: 20978256 aggtttcagaagtgagctcccttttaggcagggctggcactgttggtcttggaaaagcag 20978315 Query: 415 tggacgtactagacacacttggcagtagcatg 446 |||| || ||||| || ||||| ||||||||| Sbjct: 20978316 tggaggttctagatacgcttggtagtagcatg 20978347
>ref|NM_103154.2| Arabidopsis thaliana unknown protein AT1G34320 mRNA, complete cds Length = 2291 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 340 aagctggtgctgccaaggtttcggaagttagctcaattctgggtagggctggtactgttg 399 |||||| || ||| |||||||||||||| ||||| || ||||||||||||||||| | | Sbjct: 299 aagctgctgttgctaaggtttcggaagtaagctctcttttgggtagggctggtactatgg 358 Query: 400 ggcttggcaaagcagtgga 418 | ||||| ||||| ||||| Sbjct: 359 gacttggtaaagctgtgga 377
>gb|BT010615.1| Arabidopsis thaliana At1g34320 gene, complete cds Length = 1974 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 340 aagctggtgctgccaaggtttcggaagttagctcaattctgggtagggctggtactgttg 399 |||||| || ||| |||||||||||||| ||||| || ||||||||||||||||| | | Sbjct: 299 aagctgctgttgctaaggtttcggaagtaagctctcttttgggtagggctggtactatgg 358 Query: 400 ggcttggcaaagcagtgga 418 | ||||| ||||| ||||| Sbjct: 359 gacttggtaaagctgtgga 377
>dbj|AK176473.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-P14 Length = 2671 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 340 aagctggtgctgccaaggtttcggaagttagctcaattctgggtagggctggtactgttg 399 |||||| || ||| |||||||||||||| ||||| || ||||||||||||||||| | | Sbjct: 687 aagctgctgttgctaaggtttcggaagtaagctctcttttgggtagggctggtactatgg 746 Query: 400 ggcttggcaaagcagtgga 418 | ||||| ||||| ||||| Sbjct: 747 gacttggtaaagctgtgga 765
>dbj|AK176401.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-11-E02 Length = 2376 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 340 aagctggtgctgccaaggtttcggaagttagctcaattctgggtagggctggtactgttg 399 |||||| || ||| |||||||||||||| ||||| || ||||||||||||||||| | | Sbjct: 370 aagctgctgttgctaaggtttcggaagtaagctctcttttgggtagggctggtactatgg 429 Query: 400 ggcttggcaaagcagtgga 418 | ||||| ||||| ||||| Sbjct: 430 gacttggtaaagctgtgga 448
>gb|AC007454.3|F23M19 Arabidopsis thaliana chromosome 1 BAC F23M19 sequence, complete sequence Length = 88401 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 355 aggtttcggaagttagctcaattctgggtagggctggtactgttgggcttggcaaagcag 414 ||||||||||||| ||||| || ||||||||||||||||| | || ||||| ||||| | Sbjct: 13721 aggtttcggaagtaagctctcttttgggtagggctggtactatgggacttggtaaagctg 13662 Query: 415 tgga 418 |||| Sbjct: 13661 tgga 13658
>ref|XM_522341.1| PREDICTED: Pan troglodytes similar to FOXJ2 forkhead factor isoform FOXJ2.S (LOC466941), mRNA Length = 1578 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcccca 151 ||||||||||||||||||||| ||||||||| Sbjct: 905 agcagcagcagccgccacagccacctcccca 935
>ref|NM_018416.2| Homo sapiens forkhead box J2 (FOXJ2), mRNA Length = 5499 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcccca 151 ||||||||||||||||||||| ||||||||| Sbjct: 1993 agcagcagcagccgccacagccacctcccca 2023
>gb|BC032608.1| Homo sapiens cDNA clone IMAGE:5538235, with apparent retained intron Length = 3344 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcccca 151 ||||||||||||||||||||| ||||||||| Sbjct: 2005 agcagcagcagccgccacagccacctcccca 2035
>gb|AF155133.1|AF155133 Homo sapiens FOXJ2 forkhead factor isoform FOXJ2.S mRNA, complete cds Length = 2677 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcccca 151 ||||||||||||||||||||| ||||||||| Sbjct: 1397 agcagcagcagccgccacagccacctcccca 1427
>gb|AC006511.5| Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186321 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaacctcccca 151 ||||||||||||||||||||| ||||||||| Sbjct: 82447 agcagcagcagccgccacagccacctcccca 82417
>gb|AF155132.1|AF155132 Homo sapiens FOXJ2 forkhead factor mRNA, complete cds Length = 4873 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcccca 151 ||||||||||||||||||||| ||||||||| Sbjct: 1397 agcagcagcagccgccacagccacctcccca 1427
>ref|XM_522353.1| PREDICTED: Pan troglodytes similar to solute carrier family 2 (facilitated glucose transporter), member 13; proton (H+) myo-inositol symporter (LOC466953), mRNA Length = 1791 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaa 143 ||||||||||||||||||||||| Sbjct: 1041 agcagcagcagccgccacagcaa 1019
>gb|AC175498.2| Pan troglodytes BAC clone CH251-572B5 from chromosome unknown, complete sequence Length = 165877 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaa 143 ||||||||||||||||||||||| Sbjct: 55849 agcagcagcagccgccacagcaa 55871
>ref|XM_516155.1| PREDICTED: Pan troglodytes similar to trinucleotide repeat containing 15; Grb10 interacting GYF protein 2 (LOC460018), mRNA Length = 922 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 672 agcagcagcagccgccacagca 693
>ref|XM_416238.1| PREDICTED: Gallus gallus similar to E1A-associated protein p300 (LOC418000), mRNA Length = 9171 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 8450 agcagcagcagccgccacagca 8471
>ref|NM_015575.2| Homo sapiens trinucleotide repeat containing 15 (TNRC15), mRNA Length = 5959 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 3949 agcagcagcagccgccacagca 3970
>gb|BC053684.1| Homo sapiens trinucleotide repeat containing 15, mRNA (cDNA clone IMAGE:4915240), complete cds Length = 3086 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 1076 agcagcagcagccgccacagca 1097
>gb|AY176045.1| Homo sapiens Grb10 interacting GYF protein 2 mRNA, complete cds Length = 5959 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 3949 agcagcagcagccgccacagca 3970
>emb|AL049749.2|HS293L6 Human DNA sequence from clone RP1-293L6 on chromosome 22 Contains the first exon of the CACNG2 gene for voltage-dependent calcium channel gamma subunit 2, ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 99497 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 gcagcagcagccgccacagcaa 143 |||||||||||||||||||||| Sbjct: 96304 gcagcagcagccgccacagcaa 96325
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 ggaggagaggaagacggtggtg 92 |||||||||||||||||||||| Sbjct: 178684 ggaggagaggaagacggtggtg 178663
>emb|BX538321.1|HSM806587 Homo sapiens mRNA; cDNA DKFZp686O20169 (from clone DKFZp686O20169) Length = 5819 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 3791 agcagcagcagccgccacagca 3812
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 ggaggagaggaagacggtggtg 92 |||||||||||||||||||||| Sbjct: 5918990 ggaggagaggaagacggtggtg 5918969
>gb|AC016692.9| Homo sapiens BAC clone RP11-93E22 from 2, complete sequence Length = 137101 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 44269 agcagcagcagccgccacagca 44290
>ref|XM_342610.2| PREDICTED: Rattus norvegicus similar to hypothetical protein MGC20460 (predicted) (LOC362297), mRNA Length = 4326 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 85 cggtggtggaggaggctgctgc 106 |||||||||||||||||||||| Sbjct: 1116 cggtggtggaggaggctgctgc 1095
>dbj|AK027021.1| Homo sapiens cDNA: FLJ23368 fis, clone HEP15739 Length = 2392 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 1117 agcagcagcagccgccacagca 1138
>dbj|AP003472.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB173C10, complete sequence Length = 103804 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 511 ttttggcatttgaggttgctaa 532 |||||||||||||||||||||| Sbjct: 18458 ttttggcatttgaggttgctaa 18479
>emb|BX538172.1|HSM806378 Homo sapiens mRNA; cDNA DKFZp686N17123 (from clone DKFZp686N17123) Length = 5738 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 3698 agcagcagcagccgccacagca 3719
>emb|BX284660.1| Human DNA sequence from clone RP1-293L6 on chromosome 22, complete sequence Length = 70881 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 gcagcagcagccgccacagcaa 143 |||||||||||||||||||||| Sbjct: 1728 gcagcagcagccgccacagcaa 1707
>dbj|AB014542.2| Homo sapiens mRNA for KIAA0642 protein, partial cds Length = 5937 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagca 142 |||||||||||||||||||||| Sbjct: 3927 agcagcagcagccgccacagca 3948
>gb|AC124664.14| Mus musculus chromosome 1, clone RP23-103B18, complete sequence Length = 220456 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 tggtggaggaggctgctgcca 108 ||||||||||||||||||||| Sbjct: 161729 tggtggaggaggctgctgcca 161749
>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence Length = 205300 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 tggtggaggaggctgctgcca 108 ||||||||||||||||||||| Sbjct: 17261 tggtggaggaggctgctgcca 17281
>gb|AC150558.1| Drosophila melanogaster clone BACR01N08, complete sequence Length = 174139 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 tgacaaatttgaatttaaata 465 ||||||||||||||||||||| Sbjct: 10484 tgacaaatttgaatttaaata 10504
>ref|XM_756908.1| Ustilago maydis 521 hypothetical protein (UM05854.1) partial mRNA Length = 4965 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacc 145 |||||||||||| |||||||||||| Sbjct: 4787 agcagcagcagcagccacagcaacc 4811
>ref|XM_742277.1| Aspergillus fumigatus Af293 acetyltransferase (Afu8g05690) partial mRNA Length = 831 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 67 tgaaggaggagaggaagacggtggt 91 |||||| |||||||||||||||||| Sbjct: 253 tgaaggcggagaggaagacggtggt 229
>ref|XM_850298.1| PREDICTED: Canis familiaris similar to Kelch-like protein 14 (LOC490494), mRNA Length = 2346 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 gcagcagcagccgccacagca 142 ||||||||||||||||||||| Sbjct: 723 gcagcagcagccgccacagca 743
>emb|AL359314.14| Human DNA sequence from clone RP11-108L4 on chromosome 9 Contains the 5' end of the KIAA0367 gene and the 5' end of the PCA3 gene for prostate cancer antigen 3 (DD3), complete sequence Length = 128480 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 540 gtgaaaggttgcaattttgat 560 ||||||||||||||||||||| Sbjct: 114153 gtgaaaggttgcaattttgat 114173
>ref|NM_145723.1| Rattus norvegicus syntaxin 17 (Stx17), mRNA Length = 1678 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagc 141 ||||||||||||||||||||| Sbjct: 417 agcagcagcagccgccacagc 437
>tpg|BK001948.1| TPA: TPA_inf: Drosophila melanogaster HDC08545 (HDC08545) gene, complete cds Length = 5707 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 gagcagcagcagccgccacagcaac 144 ||||||||||||| ||||||||||| Sbjct: 736 gagcagcagcagcagccacagcaac 712
>gb|AC092398.1|AC092398 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone BACR03G19, complete sequence Length = 165839 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 tgacaaatttgaatttaaata 465 ||||||||||||||||||||| Sbjct: 10484 tgacaaatttgaatttaaata 10504
>gb|DQ010403.1| Culex pipiens pipiens isolate CpL-Met methoprene-tolerant protein mRNA, complete cds Length = 4104 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 gcacgagcagcagcagccgccacagcaac 144 ||||||||||||||||| || |||||||| Sbjct: 2873 gcacgagcagcagcagcagcaacagcaac 2901
>ref|XM_341389.2| PREDICTED: Rattus norvegicus retinoic acid induced 17 (predicted) (Rai17_predicted), mRNA Length = 3255 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagc 141 ||||||||||||||||||||| Sbjct: 918 agcagcagcagccgccacagc 938
>gb|AF239615.1|AF239615 Manihot esculenta CRANTZ hydroxyproline-rich glycoprotein mRNA, complete cds Length = 1609 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 70 aggaggagaggaagacggtggtggaggag 98 ||||||||| | ||||||||||||||||| Sbjct: 557 aggaggagatggagacggtggtggaggag 529
>gb|AE003650.2| Drosophila melanogaster chromosome 2L, section 59 of 83 of the complete sequence Length = 273414 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 tgacaaatttgaatttaaata 465 ||||||||||||||||||||| Sbjct: 210678 tgacaaatttgaatttaaata 210698
>emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-860P2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201587 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 gcagcagcagccgccacagca 142 ||||||||||||||||||||| Sbjct: 93481 gcagcagcagccgccacagca 93501
>gb|AE003483.4| Drosophila melanogaster chromosome 3L, section 17 of 83 of the complete sequence Length = 175890 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 gagcagcagcagccgccacagcaac 144 ||||||||||||| ||||||||||| Sbjct: 166220 gagcagcagcagcagccacagcaac 166196
>gb|AF115435.1|AF115435 Rattus norvegicus syntaxin 17 mRNA, complete cds Length = 1678 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagc 141 ||||||||||||||||||||| Sbjct: 417 agcagcagcagccgccacagc 437
>gb|AY895165.1| Culex pipiens putative juvenile hormone resistant protein mRNA, complete cds Length = 3109 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 gcacgagcagcagcagccgccacagcaac 144 ||||||||||||||||| || |||||||| Sbjct: 1878 gcacgagcagcagcagcagcaacagcaac 1906
>dbj|AP003078.2| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2504H21, complete sequence Length = 138633 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 gtggtggaggaggctgctgcc 107 ||||||||||||||||||||| Sbjct: 21390 gtggtggaggaggctgctgcc 21370
>gb|U28733.1| Caenorhabditis elegans cosmid C54A12, complete sequence Length = 36998 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 gacaaatttgaatttaaatag 466 ||||||||||||||||||||| Sbjct: 14232 gacaaatttgaatttaaatag 14252
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 gcagcagcagccgccacagcaacc 145 |||||||||||| ||||||||||| Sbjct: 50642 gcagcagcagccaccacagcaacc 50665
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||| ||||||||||| Sbjct: 300544 agcagcagcagcggccacagcaac 300521
>gb|AF146793.2| Mus musculus Neuromedin U precursor (Nmu) gene, partial cds; PDCL2 (Pdcl2) gene, partial cds; CLOCK (Clock) gene, complete cds; TPARDL (Tpardl) gene, complete cds; and SRD5A2L (Srd5a2l) gene, complete cds Length = 204618 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||| |||||||||| Sbjct: 111928 agcagcagcagccaccacagcaac 111951
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 agaggaagacggtggtggag 95 |||||||||||||||||||| Sbjct: 1322790 agaggaagacggtggtggag 1322771
>gb|AC091483.6| Trypanosoma brucei chromosome 3 clone RPCI93-48K5, complete sequence Length = 161296 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 agaggaagacggtggtggag 95 |||||||||||||||||||| Sbjct: 48502 agaggaagacggtggtggag 48483
>gb|AC150753.3| Bos taurus BAC CH240-283G19 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 181464 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 cagaaagggatgggcatggc 337 |||||||||||||||||||| Sbjct: 158140 cagaaagggatgggcatggc 158159
>gb|AC147239.2| Mus musculus BAC clone RP23-386C10 from chromosome 5, complete sequence Length = 217470 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||| |||||||||| Sbjct: 103346 agcagcagcagccaccacagcaac 103369
>ref|XM_951152.1| Neurospora crassa OR74A hypothetical protein (NCU01542.1) partial mRNA Length = 4077 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||| ||||||||||| Sbjct: 671 agcagcagcagcagccacagcaac 694
>ref|XM_327980.1| Neurospora crassa OR74A hypothetical protein (NCU01542.1) partial mRNA Length = 4077 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||| ||||||||||| Sbjct: 671 agcagcagcagcagccacagcaac 694
>gb|AC034255.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-447L9, complete sequence Length = 37982 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||| ||||||||||| Sbjct: 2095 agcagcagcagcagccacagcaac 2118
>ref|NM_007715.4| Mus musculus circadian locomoter output cycles kaput (Clock), mRNA Length = 7478 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||| |||||||||| Sbjct: 2655 agcagcagcagccaccacagcaac 2678
>gb|AY216499.1| Danio rerio renin precursor, gene, complete cds Length = 24136 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgacaaatttgaatttaaat 464 |||||||||||||||||||| Sbjct: 7989 tgacaaatttgaatttaaat 7970
>gb|AC046160.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-130F23, complete sequence Length = 214627 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||| ||||||||||| Sbjct: 213552 agcagcagcagcagccacagcaac 213575
>gb|AC124468.3| Mus musculus BAC clone RP24-165F16 from chromosome 5, complete sequence Length = 169280 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||| |||||||||| Sbjct: 134960 agcagcagcagccaccacagcaac 134983
>ref|XM_821449.1| Trypanosoma brucei TREU927 clone RPCI93-48K5 cell division control protein (Tb927.3.4670) partial mRNA Length = 1287 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 agaggaagacggtggtggag 95 |||||||||||||||||||| Sbjct: 192 agaggaagacggtggtggag 211
>ref|XM_389537.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09361.1) partial mRNA Length = 1512 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 agcagcagccgccacagcaa 143 |||||||||||||||||||| Sbjct: 966 agcagcagccgccacagcaa 947
>ref|XM_381568.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein (FG01392.1) partial mRNA Length = 1071 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ggaggaggctgctgccaaga 111 |||||||||||||||||||| Sbjct: 942 ggaggaggctgctgccaaga 961
>emb|AL669948.8| Mouse DNA sequence from clone RP23-248K2 on chromosome 11, complete sequence Length = 223030 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ggtgaaggaggagaggaaga 84 |||||||||||||||||||| Sbjct: 209312 ggtgaaggaggagaggaaga 209293
>emb|BX537348.8| Zebrafish DNA sequence from clone CH211-218O21 in linkage group 8, complete sequence Length = 207282 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgacaaatttgaatttaaat 464 |||||||||||||||||||| Sbjct: 203187 tgacaaatttgaatttaaat 203168
>gb|AY337315.1| Homo sapiens surfactant, pulmonary-associated protein C (SFTPC) gene, complete cds Length = 7746 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacag 140 |||||||||||||||||||| Sbjct: 2588 agcagcagcagccgccacag 2607
>gb|U80845.2| Caenorhabditis elegans cosmid C24A8, complete sequence Length = 37753 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 gcagcagcagccgccacagcaacc 145 ||||||||||| |||||||||||| Sbjct: 7904 gcagcagcagcagccacagcaacc 7881
>emb|AL355332.8| Human DNA sequence from clone RP11-390F23 on chromosome 10 Contains a CpG island, complete sequence Length = 182997 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 caacagcttatctctgtccc 235 |||||||||||||||||||| Sbjct: 110968 caacagcttatctctgtccc 110949
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gcacgagcagcagcagccgc 135 |||||||||||||||||||| Sbjct: 2780327 gcacgagcagcagcagccgc 2780346
>gb|AC105141.7| Homo sapiens chromosome 8, clone CTD-3110J21, complete sequence Length = 137952 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacag 140 |||||||||||||||||||| Sbjct: 135686 agcagcagcagccgccacag 135667
>emb|Z71330.1|SCYNL054W S.cerevisiae chromosome XIV reading frame ORF YNL054w Length = 11096 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcc 148 |||||||||||| || |||||||||||| Sbjct: 8646 agcagcagcagcagcaacagcaacctcc 8673
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 497 caacaaaatatccattttggcatt 520 ||||||||||||||||| |||||| Sbjct: 1523185 caacaaaatatccatttcggcatt 1523208
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gcagcagcagccgccacagc 141 |||||||||||||||||||| Sbjct: 66621 gcagcagcagccgccacagc 66640
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gcacgagcagcagcagccgc 135 |||||||||||||||||||| Sbjct: 18148 gcacgagcagcagcagccgc 18167
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gtgatccaccaccacgagcg 58 |||||||||||||||||||| Sbjct: 63439 gtgatccaccaccacgagcg 63420
>emb|AL670002.1|NCB24G3 Neurospora crassa DNA linkage group II BAC clone B24G3 Length = 77166 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||| ||||||||||| Sbjct: 37826 agcagcagcagcagccacagcaac 37849
>gb|AY970944.1|AY970943S2 Astatotilapia burtoni BAC 161-I13 Sox10b (sox10b) gene, exon 3 and partial cds Length = 615 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||| |||||||||| Sbjct: 349 agcagcagcagccaccacagcaac 372
>gb|AC105206.8| Homo sapiens chromosome 8, clone CTD-2530N21, complete sequence Length = 218931 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacag 140 |||||||||||||||||||| Sbjct: 128267 agcagcagcagccgccacag 128248
>gb|AC104008.4| Homo sapiens chromosome 8, clone RP11-192I2, complete sequence Length = 129898 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacag 140 |||||||||||||||||||| Sbjct: 61609 agcagcagcagccgccacag 61628
>gb|AF033107.1| Grus americana B-G-like protein (bg2) gene, complete cds Length = 4126 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 gagcagcagcagccgccacagcaa 143 ||||||||||||| |||||||||| Sbjct: 3633 gagcagcagcagcagccacagcaa 3610
>gb|AC115836.5| Homo sapiens chromosome 8, clone RP11-1069E10, complete sequence Length = 107374 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacag 140 |||||||||||||||||||| Sbjct: 9181 agcagcagcagccgccacag 9200
>ref|NM_176592.1| Drosophila melanogaster CG12071-RB, transcript variant B (CG12071), mRNA Length = 2479 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 1828 agcagcagcagccgcaacagcaac 1851
>ref|NM_143575.2| Drosophila melanogaster CG12071-RA, transcript variant A (CG12071), mRNA Length = 2566 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 1915 agcagcagcagccgcaacagcaac 1938
>ref|NM_142122.2| Drosophila melanogaster CG7832-RA (CG7832), mRNA Length = 4212 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 430 agcagcagcagccgcaacagcaac 453
>gb|AY090568.1| Homo sapiens pulmonary surfactant protein C gene, 5' flanking and promoter regions Length = 3792 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacag 140 |||||||||||||||||||| Sbjct: 1571 agcagcagcagccgccacag 1590
>ref|XM_689412.1| PREDICTED: Danio rerio similar to nicotinic acetylcholine receptor alpha 7b subunit (LOC566141), mRNA Length = 1800 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cggtggtggaggaggctgct 104 |||||||||||||||||||| Sbjct: 1533 cggtggtggaggaggctgct 1552
>gb|AY060224.1| Drosophila melanogaster GH01388 full length cDNA Length = 2092 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 1915 agcagcagcagccgcaacagcaac 1938
>gb|AC125680.4| Rattus norvegicus X BAC CH230-10I21 (Children's Hospital Oakland Research Institute) complete sequence Length = 139727 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 aaagggcaacaaaatatcca 510 |||||||||||||||||||| Sbjct: 138529 aaagggcaacaaaatatcca 138510
>gb|AC117871.5| Rattus norvegicus X BAC CH230-335H24 (Children's Hospital Oakland Research Institute) complete sequence Length = 148497 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 aaagggcaacaaaatatcca 510 |||||||||||||||||||| Sbjct: 802 aaagggcaacaaaatatcca 783
>ref|NM_076337.1| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-15) (pqn-15) mRNA, complete cds Length = 3654 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 gcagcagcagccgccacagcaacc 145 ||||||||||| |||||||||||| Sbjct: 1593 gcagcagcagcagccacagcaacc 1616
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||| |||||||||||||| Sbjct: 16959505 agcagcagccgccgccacagcaac 16959482
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ggtgaaggaggagaggaaga 84 |||||||||||||||||||| Sbjct: 18136208 ggtgaaggaggagaggaaga 18136227
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||| |||||||||||||| Sbjct: 15366131 agcagcagccgccgccacagcaac 15366108
>dbj|AB221635.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis, dev_stage=adult, strain=C57BL/6J), clone:V01Y035E09 Length = 2568 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||| |||||||||| Sbjct: 2267 agcagcagcagccaccacagcaac 2290
>gb|AC008219.4|AC008219 Drosophila melanogaster, chromosome 3R, region 100A-100A, BAC clone BACR03C06, complete sequence Length = 156335 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 30142 agcagcagcagccgcaacagcaac 30119
>gb|AC007809.8|AC007809 Drosophila melanogaster, chromosome 3R, region 88C-88C, BAC clone BACR45M03, complete sequence Length = 183439 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 128738 agcagcagcagccgcaacagcaac 128715
>gb|BT021960.1| Drosophila melanogaster LD12755 full insert cDNA Length = 4231 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 431 agcagcagcagccgcaacagcaac 454
>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1455F06 Length = 140848 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||||| ||||||||| Sbjct: 36150 agcagcagcagccggcacagcaac 36173
>gb|AC104244.9| Homo sapiens chromosome 8, clone RP11-1038G5, complete sequence Length = 155899 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacag 140 |||||||||||||||||||| Sbjct: 14199 agcagcagcagccgccacag 14180
>ref|XM_214307.3| PREDICTED: Rattus norvegicus calcium homeostasis endoplasmic reticulum protein (predicted) (Cherp_predicted), mRNA Length = 3738 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 cagcagcagccgccacagca 142 |||||||||||||||||||| Sbjct: 1156 cagcagcagccgccacagca 1175
>ref|XM_342840.2| PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC362522), mRNA Length = 6363 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcc 148 ||||||||||||| ||||||| |||||| Sbjct: 1613 agcagcagcagccaccacagccacctcc 1640
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||| |||||||||||||| Sbjct: 89318 agcagcagccgccgccacagcaac 89295
>dbj|AP005650.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078K05 Length = 162901 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||| |||||||||||||| Sbjct: 36913 agcagcagccgccgccacagcaac 36890
>dbj|AK129118.1| Mus musculus mRNA for mKIAA0334 protein Length = 8645 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||| |||||||||| Sbjct: 2612 agcagcagcagccaccacagcaac 2635
>dbj|AK058094.1| Homo sapiens cDNA FLJ25365 fis, clone TST01766, highly similar to PULMONARY SURFACTANT-ASSOCIATED PROTEIN C PRECURSOR Length = 1496 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacag 140 |||||||||||||||||||| Sbjct: 523 agcagcagcagccgccacag 542
>dbj|AK103120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119I02, full insert sequence Length = 1771 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||| |||||||||||||| Sbjct: 200 agcagcagccgccgccacagcaac 223
>emb|AL772186.11| Mouse DNA sequence from clone RP23-281K3 on chromosome 4, complete sequence Length = 205714 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcc 148 ||||||||||||| ||||||| |||||| Sbjct: 201606 agcagcagcagccaccacagccacctcc 201633
>emb|CR450791.5| Zebrafish DNA sequence from clone CH211-39A7 in linkage group 19, complete sequence Length = 72657 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 cggtggtggaggaggctgct 104 |||||||||||||||||||| Sbjct: 7304 cggtggtggaggaggctgct 7285
>dbj|AK062581.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B10, full insert sequence Length = 1357 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||||| ||||||||| Sbjct: 559 agcagcagcagccggcacagcaac 582
>gb|AE003705.3| Drosophila melanogaster chromosome 3R, section 43 of 118 of the complete sequence Length = 216741 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 168469 agcagcagcagccgcaacagcaac 168446
>gb|AE003775.2| Drosophila melanogaster chromosome 3R, section 113 of 118 of the complete sequence Length = 236096 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 207096 agcagcagcagccgcaacagcaac 207073
>gb|DQ332495.1| Synthetic construct Saccharomyces cerevisiae clone FLH148630.01X VAC7 gene, complete sequence Length = 3498 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcc 148 |||||||||||| || |||||||||||| Sbjct: 1406 agcagcagcagcagcaacagcaacctcc 1433
>gb|AY168548.1| Didelphis marsupialis transcription factor sox-9 (sox9) gene, partial cds Length = 672 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ggtggtggaggaggctgctg 105 |||||||||||||||||||| Sbjct: 293 ggtggtggaggaggctgctg 274
>gb|AY168546.1| Caenolestes fuliginosus transcription factor sox-9 (sox9) gene, partial cds Length = 663 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 cagcagcagccgccacagca 142 |||||||||||||||||||| Sbjct: 310 cagcagcagccgccacagca 329
>gb|AF000998.1|MMAF000998 Mus musculus CLOCK (Clock) mRNA, complete cds Length = 7478 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||| |||||||||| Sbjct: 2655 agcagcagcagccaccacagcaac 2678
>gb|AC160999.3| Mus musculus BAC clone RP23-58I16 from chromosome 14, complete sequence Length = 222122 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 68 gaaggaggagaggaagacggtggtggaggagg 99 ||||||||||||||||| || || |||||||| Sbjct: 106814 gaaggaggagaggaagaaggaggaggaggagg 106845
>dbj|AP006659.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT12L15, TM0344, complete sequence Length = 87645 Score = 40.1 bits (20), Expect = 8.1 Identities = 59/72 (81%) Strand = Plus / Plus Query: 387 gctggtactgttgggcttggcaaagcagtggacgtactagacacacttggcagtagcatg 446 |||||||| | ||| |||||||| ||||| || || | |||||| | || ||||| ||| Sbjct: 79641 gctggtacagctggacttggcaaggcagtagaagttttggacacattaggaagtagtatg 79700 Query: 447 acaaatttgaat 458 |||||||||||| Sbjct: 79701 acaaatttgaat 79712
>gb|U12141.1|SCU12141 Saccharomyces cerevisiae chromosome XIV left arm fragment Length = 44465 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaacctcc 148 |||||||||||| || |||||||||||| Sbjct: 30520 agcagcagcagcagcaacagcaacctcc 30547
>dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1090H08 Length = 200720 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ggtgaaggaggagaggaaga 84 |||||||||||||||||||| Sbjct: 140004 ggtgaaggaggagaggaaga 140023
>emb|AL627130.13| Mouse DNA sequence from clone RP23-442A20 on chromosome 4, complete sequence Length = 185761 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 aggagaggaagacggtggtggagg 96 |||||||||||||||| ||||||| Sbjct: 41827 aggagaggaagacggtagtggagg 41804
>emb|X57623.1|DMALAA Drosophila melanogaster ALA-A DNA, repeat region Length = 1127 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 agcagcagcagccgccacagcaac 144 |||||||||||||||| ||||||| Sbjct: 374 agcagcagcagccgccgcagcaac 397
>emb|AJ132598.1|DME132598 Drosophila melanogaster H4r gene,3'-flanking region, 12670 BP Length = 12670 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agcagcagcagccgccacagcaac 144 ||||||||||||||| |||||||| Sbjct: 5136 agcagcagcagccgcaacagcaac 5113 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,587,438 Number of Sequences: 3902068 Number of extensions: 5587438 Number of successful extensions: 164696 Number of sequences better than 10.0: 134 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 163756 Number of HSP's gapped (non-prelim): 932 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)