| Clone Name | baal3a22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196336.1| Oryza sativa (japonica cultivar-group) putative F-box protein family (OSJNAa0011L09.13), mRNA Length = 3459 Score = 456 bits (230), Expect = e-125 Identities = 515/610 (84%) Strand = Plus / Plus Query: 10 cttgaggcgttgcaacttgataattgtggcctgttgacatctgtgtctttggatctgcca 69 |||||||| || ||||||||||| || | ||||||||||||||||||||||||||||| Sbjct: 1465 cttgaggcattacaacttgataactgcagtttgttgacatctgtgtctttggatctgcca 1524 Query: 70 catctcaagaatattagtcttgtacacctccgcaagtttgctgatttaaatctacgaagc 129 ||||||||||| || |||||||| ||||| |||||||||||||| || | | | ||||| Sbjct: 1525 catctcaagaacataagtcttgttcacctgcgcaagtttgctgagttgactttgcgaagt 1584 Query: 130 cctgtgctttcttacataaaagtttccagatgttcagcacttcgttgtgttacaataaca 189 ||||| ||||||||||| |||||||||||||| |||| ||||| | |||||| |||||| Sbjct: 1585 cctgttctttcttacattaaagtttccagatgctcagtacttcatcgtgttagcataaca 1644 Query: 190 tcaaatgctcttaagaaactggtgcttcaaaaacaagagagcttatgtagtttatcattg 249 |||||||||||| ||||| ||||| | ||||| ||||||||| ||| ||||| |||||| Sbjct: 1645 tcaaatgctcttcagaaattggtgttgcaaaagcaagagagcctatcaagtttgtcattg 1704 Query: 250 caatgccacaatttaattgatgttgatcttagtgactgcgagtcattgacaaatgaaatt 309 |||| |||| || || ||||| ||||||||||||||||| ||||| ||||||| | || Sbjct: 1705 ttatgcaacaacttgatcgatgtcgatcttagtgactgcgaatcattaacaaatgcagtt 1764 Query: 310 tgcgaagttttcagtgacgaagggggctgccccatgctcaggtcattaattcttgataat 369 ||||||||||||||||| | ||| || ||||| ||||||| ||||| |||||||| || Sbjct: 1765 tgcgaagttttcagtgatggaggtggttgcccattgctcagatcattgattcttgacaac 1824 Query: 370 tgtgagagtttgagtgtcgtggaactgaataatagttccttggttaatctctcacttgct 429 ||||||||| |||| || |||||||||| ||||||| |||| |||||||| |||||| Sbjct: 1825 tgtgagagtctgagcactgttgaactgaatagtagttccatggtcaatctctctcttgct 1884 Query: 430 ggttgccgttccatgacattcctgaatcttgcatgccctaagcttcaagtggtgattctt 489 |||||||| ||||||||||| || || ||| ||||||| || || ||| |||| |||| Sbjct: 1885 ggttgccgctccatgacattactaaaactttcatgcccaaatctgcaaaatgtgaatctt 1944 Query: 490 gatggttgtgatcatcttgagagagcatcattttgcccggttggtcttgaatccctaaac 549 ||||| |||||||| || || || || |||||||| || ||||||||||||||||||||| Sbjct: 1945 gatggctgtgatcacctcgaaagggcgtcattttgtccagttggtcttgaatccctaaac 2004 Query: 550 cttggaatttgtccaaagttaagtgttctatgcatagaagccccaaatatgtctatattg 609 |||||||| |||||||| ||||||| ||| ||| || |||||||| |||||| ||||| Sbjct: 2005 cttggaatatgtccaaaattaagtgatcttcacattgaggccccaaagatgtctctattg 2064 Query: 610 gagctgaagg 619 |||||||||| Sbjct: 2065 gagctgaagg 2074
>dbj|AK070796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067J12, full insert sequence Length = 2385 Score = 456 bits (230), Expect = e-125 Identities = 515/610 (84%) Strand = Plus / Plus Query: 10 cttgaggcgttgcaacttgataattgtggcctgttgacatctgtgtctttggatctgcca 69 |||||||| || ||||||||||| || | ||||||||||||||||||||||||||||| Sbjct: 391 cttgaggcattacaacttgataactgcagtttgttgacatctgtgtctttggatctgcca 450 Query: 70 catctcaagaatattagtcttgtacacctccgcaagtttgctgatttaaatctacgaagc 129 ||||||||||| || |||||||| ||||| |||||||||||||| || | | | ||||| Sbjct: 451 catctcaagaacataagtcttgttcacctgcgcaagtttgctgagttgactttgcgaagt 510 Query: 130 cctgtgctttcttacataaaagtttccagatgttcagcacttcgttgtgttacaataaca 189 ||||| ||||||||||| |||||||||||||| |||| ||||| | |||||| |||||| Sbjct: 511 cctgttctttcttacattaaagtttccagatgctcagtacttcatcgtgttagcataaca 570 Query: 190 tcaaatgctcttaagaaactggtgcttcaaaaacaagagagcttatgtagtttatcattg 249 |||||||||||| ||||| ||||| | ||||| ||||||||| ||| ||||| |||||| Sbjct: 571 tcaaatgctcttcagaaattggtgttgcaaaagcaagagagcctatcaagtttgtcattg 630 Query: 250 caatgccacaatttaattgatgttgatcttagtgactgcgagtcattgacaaatgaaatt 309 |||| |||| || || ||||| ||||||||||||||||| ||||| ||||||| | || Sbjct: 631 ttatgcaacaacttgatcgatgtcgatcttagtgactgcgaatcattaacaaatgcagtt 690 Query: 310 tgcgaagttttcagtgacgaagggggctgccccatgctcaggtcattaattcttgataat 369 ||||||||||||||||| | ||| || ||||| ||||||| ||||| |||||||| || Sbjct: 691 tgcgaagttttcagtgatggaggtggttgcccattgctcagatcattgattcttgacaac 750 Query: 370 tgtgagagtttgagtgtcgtggaactgaataatagttccttggttaatctctcacttgct 429 ||||||||| |||| || |||||||||| ||||||| |||| |||||||| |||||| Sbjct: 751 tgtgagagtctgagcactgttgaactgaatagtagttccatggtcaatctctctcttgct 810 Query: 430 ggttgccgttccatgacattcctgaatcttgcatgccctaagcttcaagtggtgattctt 489 |||||||| ||||||||||| || || ||| ||||||| || || ||| |||| |||| Sbjct: 811 ggttgccgctccatgacattactaaaactttcatgcccaaatctgcaaaatgtgaatctt 870 Query: 490 gatggttgtgatcatcttgagagagcatcattttgcccggttggtcttgaatccctaaac 549 ||||| |||||||| || || || || |||||||| || ||||||||||||||||||||| Sbjct: 871 gatggctgtgatcacctcgaaagggcgtcattttgtccagttggtcttgaatccctaaac 930 Query: 550 cttggaatttgtccaaagttaagtgttctatgcatagaagccccaaatatgtctatattg 609 |||||||| |||||||| ||||||| ||| ||| || |||||||| |||||| ||||| Sbjct: 931 cttggaatatgtccaaaattaagtgatcttcacattgaggccccaaagatgtctctattg 990 Query: 610 gagctgaagg 619 |||||||||| Sbjct: 991 gagctgaagg 1000
>dbj|AK072011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102A05, full insert sequence Length = 1911 Score = 406 bits (205), Expect = e-110 Identities = 469/557 (84%) Strand = Plus / Plus Query: 63 tctgccacatctcaagaatattagtcttgtacacctccgcaagtttgctgatttaaatct 122 |||||||||||||||||| || |||||||| ||||| |||||||||||||| || | | | Sbjct: 2 tctgccacatctcaagaacataagtcttgttcacctgcgcaagtttgctgagttgacttt 61 Query: 123 acgaagccctgtgctttcttacataaaagtttccagatgttcagcacttcgttgtgttac 182 ||||| ||||| ||||||||||| |||||||||||||| |||| ||||| | |||||| Sbjct: 62 gcgaagtcctgttctttcttacattaaagtttccagatgctcagtacttcatcgtgttag 121 Query: 183 aataacatcaaatgctcttaagaaactggtgcttcaaaaacaagagagcttatgtagttt 242 |||||||||||||||||| ||||| ||||| | ||||| ||||||||| ||| ||||| Sbjct: 122 cataacatcaaatgctcttcagaaattggtgttgcaaaagcaagagagcctatcaagttt 181 Query: 243 atcattgcaatgccacaatttaattgatgttgatcttagtgactgcgagtcattgacaaa 302 |||||| |||| |||| || || ||||| ||||||||||||||||| ||||| ||||| Sbjct: 182 gtcattgttatgcaacaacttgatcgatgtcgatcttagtgactgcgaatcattaacaaa 241 Query: 303 tgaaatttgcgaagttttcagtgacgaagggggctgccccatgctcaggtcattaattct 362 || | ||||||||||||||||||| | ||| || ||||| ||||||| ||||| ||||| Sbjct: 242 tgcagtttgcgaagttttcagtgatggaggtggttgcccattgctcagatcattgattct 301 Query: 363 tgataattgtgagagtttgagtgtcgtggaactgaataatagttccttggttaatctctc 422 ||| || ||||||||| |||| || |||||||||| ||||||| |||| |||||||| Sbjct: 302 tgacaactgtgagagtctgagcactgttgaactgaatagtagttccatggtcaatctctc 361 Query: 423 acttgctggttgccgttccatgacattcctgaatcttgcatgccctaagcttcaagtggt 482 |||||||||||||| ||||||||||| || || ||| ||||||| || || ||| || Sbjct: 362 tcttgctggttgccgctccatgacattactaaaactttcatgcccaaatctgcaaaatgt 421 Query: 483 gattcttgatggttgtgatcatcttgagagagcatcattttgcccggttggtcttgaatc 542 || ||||||||| |||||||| || || || || |||||||| || |||||||||||||| Sbjct: 422 gaatcttgatggctgtgatcacctcgaaagggcgtcattttgtccagttggtcttgaatc 481 Query: 543 cctaaaccttggaatttgtccaaagttaagtgttctatgcatagaagccccaaatatgtc 602 ||||||||||||||| |||||||| ||||||| ||| ||| || |||||||| ||||| Sbjct: 482 cctaaaccttggaatatgtccaaaattaagtgatcttcacattgaggccccaaagatgtc 541 Query: 603 tatattggagctgaagg 619 | ||||||||||||||| Sbjct: 542 tctattggagctgaagg 558
>gb|BT018755.1| Zea mays clone EL01N0523E09.d mRNA sequence Length = 2199 Score = 278 bits (140), Expect = 2e-71 Identities = 353/424 (83%) Strand = Plus / Plus Query: 25 cttgataattgtggcctgttgacatctgtgtctttggatctgccacatctcaagaatatt 84 ||||||||||| ||||||||||||| ||||||||||| | |||||||| |||||||| Sbjct: 280 cttgataattgcagcctgttgacatcagtgtctttggacttaccacatcttaagaatatg 339 Query: 85 agtcttgtacacctccgcaagtttgctgatttaaatctacgaagccctgtgctttcttac 144 ||||| || || | |||||||||||||| || ||||| || |||||||||||||||||| Sbjct: 340 agtctcgtgcatttacgcaagtttgctgaattgaatctgcggagccctgtgctttcttac 399 Query: 145 ataaaagtttccagatgttcagcacttcgttgtgttacaataacatcaaatgctcttaag 204 || ||||||||||||||||||| || | | | |||| |||||||| | | ||| || Sbjct: 400 atcaaagtttccagatgttcagtgctccatcgagttagcataacatcgaccacacttcag 459 Query: 205 aaactggtgcttcaaaaacaagagagcttatgtagtttatcattgcaatgccacaattta 264 ||| |||||||||| ||||||||||| |||| || || ||||||||||||||||| || Sbjct: 460 aaattggtgcttcagaaacaagagagtttatccagcttgtcattgcaatgccacaacttg 519 Query: 265 attgatgttgatcttagtgactgcgagtcattgacaaatgaaatttgcgaagttttcagt 324 |||||||| |||||||| |||||||||||||| ||||||| ||||| ||||| || ||| Sbjct: 520 attgatgtggatcttagcgactgcgagtcattaacaaatgcgatttgtgaagtatttagt 579 Query: 325 gacgaagggggctgccccatgctcaggtcattaattcttgataattgtgagagtttgagt 384 || | ||| || ||||| | ||| || ||||| |||||||| ||||||||||||||||| Sbjct: 580 gatggaggtggttgccctaagctaagatcattgattcttgacaattgtgagagtttgagc 639 Query: 385 gtcgtggaactgaataatagttccttggttaatctctcacttgctggttgccgttccatg 444 | || |||||||||| ||||| |||||| |||||| |||||||||||||| || ||| Sbjct: 640 attgtagaactgaatagcagttctttggtttgtctctctcttgctggttgccgctcgatg 699 Query: 445 acat 448 |||| Sbjct: 700 acat 703 Score = 69.9 bits (35), Expect = 9e-09 Identities = 106/127 (83%), Gaps = 2/127 (1%) Strand = Plus / Plus Query: 481 gtgattcttgatggttgtgatcatcttgagagagcatcattttgcccggttggtcttgaa 540 |||| ||||||||| |||||||| ||| | | ||| |||| || || || || |||||| Sbjct: 736 gtgaatcttgatggatgtgatcaccttcaaaatgcagcattctgtccagtgggccttgaa 795 Query: 541 tccctaaaccttggaa-tttgtccaaagttaagtgttctatgcatagaagccccaaatat 599 |||||||| || |||| |||||||||| |||||| |||| ||||| || ||||||||||| Sbjct: 796 tccctaaatctgggaaatttgtccaaa-ttaagtattctgtgcattgaggccccaaatat 854 Query: 600 gtctata 606 ||||||| Sbjct: 855 gtctata 861
>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0011L09, complete sequence Length = 121055 Score = 113 bits (57), Expect = 7e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 203 agaaactggtgcttcaaaaacaagagagcttatgtagtttatcattgcaatgccacaatt 262 ||||| ||||| | ||||| ||||||||| ||| ||||| |||||| |||| |||| | Sbjct: 80156 agaaattggtgttgcaaaagcaagagagcctatcaagtttgtcattgttatgcaacaact 80097 Query: 263 taattgatgttgatcttagtgactgcgagtcattgacaaatgaaatttgcgaagttttca 322 | || ||||| ||||||||||||||||| ||||| ||||||| | ||||||||||||||| Sbjct: 80096 tgatcgatgtcgatcttagtgactgcgaatcattaacaaatgcagtttgcgaagttttca 80037 Query: 323 gtgacgaagggggctgccccatgctcaggtcattaattcttgataattgtgag 375 |||| | ||| || ||||| ||||||| ||||| |||||||| || |||||| Sbjct: 80036 gtgatggaggtggttgcccattgctcagatcattgattcttgacaactgtgag 79984 Score = 103 bits (52), Expect = 7e-19 Identities = 82/92 (89%) Strand = Plus / Minus Query: 528 ggttggtcttgaatccctaaaccttggaatttgtccaaagttaagtgttctatgcataga 587 |||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| || Sbjct: 78729 ggttggtcttgaatccctaaaccttggaatatgtccaaaattaagtgatcttcacattga 78670 Query: 588 agccccaaatatgtctatattggagctgaagg 619 |||||||| |||||| ||||||||||||||| Sbjct: 78669 ggccccaaagatgtctctattggagctgaagg 78638 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Minus Query: 41 tgttgacatctgtgtctttggatctgccacatctcaagaatattagtcttgtacacctcc 100 |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| | Sbjct: 80525 tgttgacatctgtgtctttggatctgccacatctcaagaacataagtcttgttcacctgc 80466 Query: 101 gcaagt 106 |||||| Sbjct: 80465 gcaagt 80460 Score = 91.7 bits (46), Expect = 3e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 391 gaactgaataatagttccttggttaatctctcacttgctggttgccgttccatgacattc 450 |||||||||| ||||||| |||| |||||||| |||||||||||||| ||||||||||| Sbjct: 79706 gaactgaatagtagttccatggtcaatctctctcttgctggttgccgctccatgacatta 79647 Query: 451 ctgaatcttgcatgccctaagcttcaagtggtgattcttgatggttgtgatcatcttgag 510 || || ||| ||||||| || || ||| |||| ||||||||| |||||||| || || Sbjct: 79646 ctaaaactttcatgcccaaatctgcaaaatgtgaatcttgatggctgtgatcacctcgaa 79587 Query: 511 agagcatcattttg 524 || || |||||||| Sbjct: 79586 agggcgtcattttg 79573 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 124 cgaagccctgtgctttcttacataaaagtttccagatgttcagcacttcgttgtgttaca 183 ||||| ||||| ||||||||||| |||||||||||||| |||| ||||| | |||||| Sbjct: 80341 cgaagtcctgttctttcttacattaaagtttccagatgctcagtacttcatcgtgttagc 80282 Query: 184 ataacatcaaatgctctt 201 |||||||||||||||||| Sbjct: 80281 ataacatcaaatgctctt 80264
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 113 bits (57), Expect = 7e-22 Identities = 144/173 (83%) Strand = Plus / Plus Query: 203 agaaactggtgcttcaaaaacaagagagcttatgtagtttatcattgcaatgccacaatt 262 ||||| ||||| | ||||| ||||||||| ||| ||||| |||||| |||| |||| | Sbjct: 137132 agaaattggtgttgcaaaagcaagagagcctatcaagtttgtcattgttatgcaacaact 137191 Query: 263 taattgatgttgatcttagtgactgcgagtcattgacaaatgaaatttgcgaagttttca 322 | || ||||| ||||||||||||||||| ||||| ||||||| | ||||||||||||||| Sbjct: 137192 tgatcgatgtcgatcttagtgactgcgaatcattaacaaatgcagtttgcgaagttttca 137251 Query: 323 gtgacgaagggggctgccccatgctcaggtcattaattcttgataattgtgag 375 |||| | ||| || ||||| ||||||| ||||| |||||||| || |||||| Sbjct: 137252 gtgatggaggtggttgcccattgctcagatcattgattcttgacaactgtgag 137304 Score = 103 bits (52), Expect = 7e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 528 ggttggtcttgaatccctaaaccttggaatttgtccaaagttaagtgttctatgcataga 587 |||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| || Sbjct: 138559 ggttggtcttgaatccctaaaccttggaatatgtccaaaattaagtgatcttcacattga 138618 Query: 588 agccccaaatatgtctatattggagctgaagg 619 |||||||| |||||| ||||||||||||||| Sbjct: 138619 ggccccaaagatgtctctattggagctgaagg 138650 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 41 tgttgacatctgtgtctttggatctgccacatctcaagaatattagtcttgtacacctcc 100 |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| | Sbjct: 136763 tgttgacatctgtgtctttggatctgccacatctcaagaacataagtcttgttcacctgc 136822 Query: 101 gcaagt 106 |||||| Sbjct: 136823 gcaagt 136828 Score = 91.7 bits (46), Expect = 3e-15 Identities = 112/134 (83%) Strand = Plus / Plus Query: 391 gaactgaataatagttccttggttaatctctcacttgctggttgccgttccatgacattc 450 |||||||||| ||||||| |||| |||||||| |||||||||||||| ||||||||||| Sbjct: 137582 gaactgaatagtagttccatggtcaatctctctcttgctggttgccgctccatgacatta 137641 Query: 451 ctgaatcttgcatgccctaagcttcaagtggtgattcttgatggttgtgatcatcttgag 510 || || ||| ||||||| || || ||| |||| ||||||||| |||||||| || || Sbjct: 137642 ctaaaactttcatgcccaaatctgcaaaatgtgaatcttgatggctgtgatcacctcgaa 137701 Query: 511 agagcatcattttg 524 || || |||||||| Sbjct: 137702 agggcgtcattttg 137715 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 124 cgaagccctgtgctttcttacataaaagtttccagatgttcagcacttcgttgtgttaca 183 ||||| ||||| ||||||||||| |||||||||||||| |||| ||||| | |||||| Sbjct: 136947 cgaagtcctgttctttcttacattaaagtttccagatgctcagtacttcatcgtgttagc 137006 Query: 184 ataacatcaaatgctctt 201 |||||||||||||||||| Sbjct: 137007 ataacatcaaatgctctt 137024
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 113 bits (57), Expect = 7e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 203 agaaactggtgcttcaaaaacaagagagcttatgtagtttatcattgcaatgccacaatt 262 ||||| ||||| | ||||| ||||||||| ||| ||||| |||||| |||| |||| | Sbjct: 12783717 agaaattggtgttgcaaaagcaagagagcctatcaagtttgtcattgttatgcaacaact 12783658 Query: 263 taattgatgttgatcttagtgactgcgagtcattgacaaatgaaatttgcgaagttttca 322 | || ||||| ||||||||||||||||| ||||| ||||||| | ||||||||||||||| Sbjct: 12783657 tgatcgatgtcgatcttagtgactgcgaatcattaacaaatgcagtttgcgaagttttca 12783598 Query: 323 gtgacgaagggggctgccccatgctcaggtcattaattcttgataattgtgag 375 |||| | ||| || ||||| ||||||| ||||| |||||||| || |||||| Sbjct: 12783597 gtgatggaggtggttgcccattgctcagatcattgattcttgacaactgtgag 12783545 Score = 103 bits (52), Expect = 7e-19 Identities = 82/92 (89%) Strand = Plus / Minus Query: 528 ggttggtcttgaatccctaaaccttggaatttgtccaaagttaagtgttctatgcataga 587 |||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| || Sbjct: 12782290 ggttggtcttgaatccctaaaccttggaatatgtccaaaattaagtgatcttcacattga 12782231 Query: 588 agccccaaatatgtctatattggagctgaagg 619 |||||||| |||||| ||||||||||||||| Sbjct: 12782230 ggccccaaagatgtctctattggagctgaagg 12782199 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Minus Query: 41 tgttgacatctgtgtctttggatctgccacatctcaagaatattagtcttgtacacctcc 100 |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| | Sbjct: 12784086 tgttgacatctgtgtctttggatctgccacatctcaagaacataagtcttgttcacctgc 12784027 Query: 101 gcaagt 106 |||||| Sbjct: 12784026 gcaagt 12784021 Score = 91.7 bits (46), Expect = 3e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 391 gaactgaataatagttccttggttaatctctcacttgctggttgccgttccatgacattc 450 |||||||||| ||||||| |||| |||||||| |||||||||||||| ||||||||||| Sbjct: 12783267 gaactgaatagtagttccatggtcaatctctctcttgctggttgccgctccatgacatta 12783208 Query: 451 ctgaatcttgcatgccctaagcttcaagtggtgattcttgatggttgtgatcatcttgag 510 || || ||| ||||||| || || ||| |||| ||||||||| |||||||| || || Sbjct: 12783207 ctaaaactttcatgcccaaatctgcaaaatgtgaatcttgatggctgtgatcacctcgaa 12783148 Query: 511 agagcatcattttg 524 || || |||||||| Sbjct: 12783147 agggcgtcattttg 12783134 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 124 cgaagccctgtgctttcttacataaaagtttccagatgttcagcacttcgttgtgttaca 183 ||||| ||||| ||||||||||| |||||||||||||| |||| ||||| | |||||| Sbjct: 12783902 cgaagtcctgttctttcttacattaaagtttccagatgctcagtacttcatcgtgttagc 12783843 Query: 184 ataacatcaaatgctctt 201 |||||||||||||||||| Sbjct: 12783842 ataacatcaaatgctctt 12783825
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 113 bits (57), Expect = 7e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 203 agaaactggtgcttcaaaaacaagagagcttatgtagtttatcattgcaatgccacaatt 262 ||||| ||||| | ||||| ||||||||| ||| ||||| |||||| |||| |||| | Sbjct: 12791058 agaaattggtgttgcaaaagcaagagagcctatcaagtttgtcattgttatgcaacaact 12790999 Query: 263 taattgatgttgatcttagtgactgcgagtcattgacaaatgaaatttgcgaagttttca 322 | || ||||| ||||||||||||||||| ||||| ||||||| | ||||||||||||||| Sbjct: 12790998 tgatcgatgtcgatcttagtgactgcgaatcattaacaaatgcagtttgcgaagttttca 12790939 Query: 323 gtgacgaagggggctgccccatgctcaggtcattaattcttgataattgtgag 375 |||| | ||| || ||||| ||||||| ||||| |||||||| || |||||| Sbjct: 12790938 gtgatggaggtggttgcccattgctcagatcattgattcttgacaactgtgag 12790886 Score = 103 bits (52), Expect = 7e-19 Identities = 82/92 (89%) Strand = Plus / Minus Query: 528 ggttggtcttgaatccctaaaccttggaatttgtccaaagttaagtgttctatgcataga 587 |||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| || Sbjct: 12789631 ggttggtcttgaatccctaaaccttggaatatgtccaaaattaagtgatcttcacattga 12789572 Query: 588 agccccaaatatgtctatattggagctgaagg 619 |||||||| |||||| ||||||||||||||| Sbjct: 12789571 ggccccaaagatgtctctattggagctgaagg 12789540 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Minus Query: 41 tgttgacatctgtgtctttggatctgccacatctcaagaatattagtcttgtacacctcc 100 |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| | Sbjct: 12791427 tgttgacatctgtgtctttggatctgccacatctcaagaacataagtcttgttcacctgc 12791368 Query: 101 gcaagt 106 |||||| Sbjct: 12791367 gcaagt 12791362 Score = 91.7 bits (46), Expect = 3e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 391 gaactgaataatagttccttggttaatctctcacttgctggttgccgttccatgacattc 450 |||||||||| ||||||| |||| |||||||| |||||||||||||| ||||||||||| Sbjct: 12790608 gaactgaatagtagttccatggtcaatctctctcttgctggttgccgctccatgacatta 12790549 Query: 451 ctgaatcttgcatgccctaagcttcaagtggtgattcttgatggttgtgatcatcttgag 510 || || ||| ||||||| || || ||| |||| ||||||||| |||||||| || || Sbjct: 12790548 ctaaaactttcatgcccaaatctgcaaaatgtgaatcttgatggctgtgatcacctcgaa 12790489 Query: 511 agagcatcattttg 524 || || |||||||| Sbjct: 12790488 agggcgtcattttg 12790475 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 124 cgaagccctgtgctttcttacataaaagtttccagatgttcagcacttcgttgtgttaca 183 ||||| ||||| ||||||||||| |||||||||||||| |||| ||||| | |||||| Sbjct: 12791243 cgaagtcctgttctttcttacattaaagtttccagatgctcagtacttcatcgtgttagc 12791184 Query: 184 ataacatcaaatgctctt 201 |||||||||||||||||| Sbjct: 12791183 ataacatcaaatgctctt 12791166
>gb|AY727533.1| Caladium virus X RNA-dependent RNA polymerase gene, partial cds Length = 738 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 205 aaactggtgcttcaaaaacaag 226 |||||||||||||||||||||| Sbjct: 507 aaactggtgcttcaaaaacaag 528
>gb|AF130866.6| Homo sapiens chromosome 8 clone GS1-172N13 map q24.22, complete sequence Length = 128891 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 atcatcttgagagagcatcat 520 ||||||||||||||||||||| Sbjct: 76948 atcatcttgagagagcatcat 76968
>gb|AC132284.5| Mus musculus BAC clone RP24-351O18 from chromosome 5, complete sequence Length = 174681 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 198 tcttaagaaactggtgcttcaaaaa 222 ||||| ||||||||||||||||||| Sbjct: 125583 tcttaggaaactggtgcttcaaaaa 125607
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9 Length = 110257 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 agaatattagtcttgtacacc 97 ||||||||||||||||||||| Sbjct: 56078 agaatattagtcttgtacacc 56098
>gb|AC159656.11| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 205702 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 agccccaaatatgtctatatt 608 ||||||||||||||||||||| Sbjct: 18940 agccccaaatatgtctatatt 18960
>gb|AC108447.3| Homo sapiens chromosome 8, clone RP11-1104D13, complete sequence Length = 71260 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 atcatcttgagagagcatcat 520 ||||||||||||||||||||| Sbjct: 34785 atcatcttgagagagcatcat 34805
>gb|AC138185.2| Homo sapiens chromosome 8, clone RP11-640O8, complete sequence Length = 152309 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 atcatcttgagagagcatcat 520 ||||||||||||||||||||| Sbjct: 95491 atcatcttgagagagcatcat 95511
>dbj|AP005856.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1568E2, complete sequence Length = 160612 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 atcatcttgagagagcatcat 520 ||||||||||||||||||||| Sbjct: 94223 atcatcttgagagagcatcat 94243
>ref|NM_119475.1| Arabidopsis thaliana ubiquitin-protein ligase AT4G33210 mRNA, complete cds Length = 2829 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 337 tgccccatgctcaggtcattaattcttgataattgtgagagttt 380 ||||| ||||| | |||||| |||||||| || ||||||||||| Sbjct: 1750 tgcccaatgctgaagtcattgattcttgacaactgtgagagttt 1793
>ref|XM_631061.1| Dictyostelium discoideum hypothetical protein (DDB0188474), partial mRNA Length = 3807 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 aatttaattgatgttgatcttagt 282 |||||||||||||||||| ||||| Sbjct: 1468 aatttaattgatgttgatattagt 1491
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgaataatagttccttggtt 414 |||||||||||||||||||| Sbjct: 65744 tgaataatagttccttggtt 65725
>gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, complete sequence Length = 163637 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 ccaaagttaagtgttctatg 581 |||||||||||||||||||| Sbjct: 130204 ccaaagttaagtgttctatg 130223
>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete genome Length = 686194 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 tgtctatattggagctgaag 618 |||||||||||||||||||| Sbjct: 509904 tgtctatattggagctgaag 509923
>emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in linkage group 1, complete sequence Length = 80060 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 cttgatggttgtgatcatct 506 |||||||||||||||||||| Sbjct: 20455 cttgatggttgtgatcatct 20474
>gb|AC004028.2| Homo sapiens PAC clone RP4-800B9 from 7, complete sequence Length = 112392 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 ccaaagttaagtgttctatg 581 |||||||||||||||||||| Sbjct: 26537 ccaaagttaagtgttctatg 26556
>emb|AL354919.16| Human DNA sequence from clone RP11-84A19 on chromosome 1 Contains the 5' end of the BAI2 gene for brain-specific angiogenesis inhibitor 2, the gene for a novel protein (FLJ33697, FLJ25348, FLJ39908, FLJ25348, FLJ38510, FLJ38873), a novel gene (FLJ46627) and three CpG islands, complete sequence Length = 124413 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 582 catagaagccccaaatatgtctat 605 |||||||||||||||| ||||||| Sbjct: 34105 catagaagccccaaatctgtctat 34082
>gb|AC159547.4| Mus musculus 6 BAC RP23-235P6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204498 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tgctttcttacataaaagtt 153 |||||||||||||||||||| Sbjct: 15293 tgctttcttacataaaagtt 15274
>emb|AL355921.1|SPBC1198 Schizosaccharomyces pombe cosmids c1198 Length = 26756 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tgcttcaaaaacaagagagc 231 |||||||||||||||||||| Sbjct: 5853 tgcttcaaaaacaagagagc 5872
>gb|AC106706.4| Homo sapiens 3 BAC RP11-523O12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 61228 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tgtgttacaataacatcaaa 194 |||||||||||||||||||| Sbjct: 49434 tgtgttacaataacatcaaa 49453
>gb|AC090679.5| Homo sapiens 12 BAC RP11-80O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156596 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 aatgctcttaagaaactggtgctt 216 |||||| ||||||||||||||||| Sbjct: 4322 aatgcttttaagaaactggtgctt 4299
>gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map nga361, complete sequence Length = 79734 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tacgaagccctgtgctttct 141 |||||||||||||||||||| Sbjct: 50962 tacgaagccctgtgctttct 50943
>gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104O10, complete sequence Length = 207424 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 gttgtgatcatcttgagaga 513 |||||||||||||||||||| Sbjct: 15978 gttgtgatcatcttgagaga 15959
>gb|AC068629.35| Homo sapiens 12 BAC RP11-162A11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191117 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 582 catagaagccccaaatatgtctat 605 |||||||||||||||| ||||||| Sbjct: 188946 catagaagccccaaatctgtctat 188923
>gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosome 1, complete sequence Length = 194368 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ataattgtgagagtttgagt 384 |||||||||||||||||||| Sbjct: 133736 ataattgtgagagtttgagt 133717
>ref|NM_001020979.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC1198.04c), partial mRNA Length = 2694 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tgcttcaaaaacaagagagc 231 |||||||||||||||||||| Sbjct: 2067 tgcttcaaaaacaagagagc 2048
>emb|BX005368.11| Zebrafish DNA sequence from clone CH211-64C10 in linkage group 6, complete sequence Length = 187621 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 tggttgccgttccatgacat 448 |||||||||||||||||||| Sbjct: 49439 tggttgccgttccatgacat 49420
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgaataatagttccttggtt 414 |||||||||||||||||||| Sbjct: 3548607 tgaataatagttccttggtt 3548588
>gb|AC016763.8| Homo sapiens BAC clone RP11-548K3 from 2, complete sequence Length = 143283 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 catctgtgtctttggatctg 66 |||||||||||||||||||| Sbjct: 14439 catctgtgtctttggatctg 14420
>gb|AF199436.1|AF199436 Schizosaccharomyces pombe C2H2 zinc finger protein Zas1B (zas1) mRNA, complete cds Length = 2820 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tgcttcaaaaacaagagagc 231 |||||||||||||||||||| Sbjct: 2067 tgcttcaaaaacaagagagc 2048
>gb|AF199437.1|AF199437 Schizosaccharomyces pombe C2H2 zinc finger protein Zas1A (zas1) mRNA, complete cds Length = 2664 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tgcttcaaaaacaagagagc 231 |||||||||||||||||||| Sbjct: 1911 tgcttcaaaaacaagagagc 1892
>emb|BX088591.11| Zebrafish DNA sequence from clone CH211-205N20, complete sequence Length = 181336 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 tggttgccgttccatgacat 448 |||||||||||||||||||| Sbjct: 82853 tggttgccgttccatgacat 82872
>gb|AC068812.13|AC068812 Homo sapiens chromosome N/A clone RP11-201E13, complete sequence Length = 177862 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 tggttgtgatcatcttgaga 511 |||||||||||||||||||| Sbjct: 143704 tggttgtgatcatcttgaga 143685
>gb|AC153620.4| Mus musculus 6 BAC RP23-326P16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194383 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tgctttcttacataaaagtt 153 |||||||||||||||||||| Sbjct: 81753 tgctttcttacataaaagtt 81772
>emb|BX322642.15| Mouse DNA sequence from clone RP24-363O9 on chromosome 2, complete sequence Length = 43737 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 acaataacatcaaatgctcttaag 204 ||||||||| |||||||||||||| Sbjct: 22218 acaataacagcaaatgctcttaag 22195
>emb|AL121775.3|CNS01DSG Human chromosome 14 DNA sequence BAC R-552K16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172576 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 tggttgtgatcatcttgaga 511 |||||||||||||||||||| Sbjct: 89717 tggttgtgatcatcttgaga 89736
>emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, complete sequence Length = 164317 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 gtcttgaatccctaaacctt 552 |||||||||||||||||||| Sbjct: 8294 gtcttgaatccctaaacctt 8313
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgaataatagttccttggtt 414 |||||||||||||||||||| Sbjct: 3557311 tgaataatagttccttggtt 3557292
>gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Research Genetics) , PAC RPCI1-27C22 (from Roswell Park Cancer Center), and Cosmid U35B5 (from Lawrence Livermore), complete sequence Length = 259202 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 aaactggtgcttcaaaaacaagag 228 ||||||| |||||||||||||||| Sbjct: 112599 aaactggagcttcaaaaacaagag 112622
>gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, complete sequence Length = 182809 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 gttgtgatcatcttgagaga 513 |||||||||||||||||||| Sbjct: 41223 gttgtgatcatcttgagaga 41242
>gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromosome ul, complete sequence Length = 176724 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 acataaaagtttccagatgt 162 |||||||||||||||||||| Sbjct: 81979 acataaaagtttccagatgt 81998
>dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34J23, TM0284, complete sequence Length = 92675 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 aagaatattagtcttgtaca 95 |||||||||||||||||||| Sbjct: 38504 aagaatattagtcttgtaca 38485
>gb|U33010.1|SPU33010 Schizosaccharomyces pombe cosmids 359, 1198 and 1683 Length = 85837 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tgcttcaaaaacaagagagc 231 |||||||||||||||||||| Sbjct: 64934 tgcttcaaaaacaagagagc 64953
>gb|U33008.1|SPU33008 Schizosaccharomyces pombe cosmid 1198 Length = 37596 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tgcttcaaaaacaagagagc 231 |||||||||||||||||||| Sbjct: 16693 tgcttcaaaaacaagagagc 16712 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,992,386 Number of Sequences: 3902068 Number of extensions: 5992386 Number of successful extensions: 109102 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108844 Number of HSP's gapped (non-prelim): 252 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)