ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2l15 |
|---|---|
| Clone Library Name | barley_pub |
>HSP7M_PHAVU (Q01899) Heat shock 70 kDa protein, mitochondrial precursor| Length = 675 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = +1 Query: 37 DQAPEAEYEEVKK 75 DQAPEAEYEEVKK Sbjct: 663 DQAPEAEYEEVKK 675
>LHX1_XENLA (P29674) LIM/homeobox protein Lhx1 (Homeobox protein LIM-1)| (xLIM-1) Length = 403 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 70 ISPSDLVRRARSKVFHLNCFTCM 92
>LHX5_BRARE (P52889) LIM/homeobox protein Lhx5 (Homeobox protein LIM-5)| Length = 399 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 71 ISPSDLVRRARSKVFHLNCFTCM 93
>LHX1_SAIBB (Q5IS89) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| Length = 406 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 70 ISPSDLVRRARSKVFHLNCFTCM 92
>LHX1_RAT (P63007) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) (Rlim) Length = 406 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 70 ISPSDLVRRARSKVFHLNCFTCM 92
>LHX1_PANTR (Q5IS44) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| Length = 406 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 70 ISPSDLVRRARSKVFHLNCFTCM 92
>LHX1_MOUSE (P63006) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) Length = 406 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 70 ISPSDLVRRARSKVFHLNCFTCM 92
>LHX1_MESAU (P63008) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) (Homeobox protein LMX-2) Length = 406 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 70 ISPSDLVRRARSKVFHLNCFTCM 92
>LHX1_HUMAN (P48742) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) Length = 406 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 70 ISPSDLVRRARSKVFHLNCFTCM 92
>LHX1_CHICK (P53411) LIM/homeobox protein Lhx1 (Homeobox protein LIM-1)| Length = 406 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 70 ISPSDLVRRARSKVFHLNCFTCM 92
>LHX5_RAT (P61376) LIM/homeobox protein Lhx5 (Homeobox protein LIM-2)| Length = 402 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 71 ISPSDLVRKARSKVFHLNCFTCM 93
>LHX5_MOUSE (P61375) LIM/homeobox protein Lhx5| Length = 402 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 71 ISPSDLVRKARSKVFHLNCFTCM 93
>LHX5_HUMAN (Q9H2C1) LIM/homeobox protein Lhx5| Length = 402 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R++ HL CFTC+ Sbjct: 71 ISPSDLVRKARSKVFHLNCFTCM 93
>HSP7M_PEA (P37900) Heat shock 70 kDa protein, mitochondrial precursor| Length = 675 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = +1 Query: 37 DQAPEAEYEEVKK 75 +QAPEAEYEEVKK Sbjct: 663 EQAPEAEYEEVKK 675
>LHX1_BRARE (Q90476) LIM/homeobox protein Lhx1 (Homeobox protein LIM-1)| Length = 405 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + P++ +R+ R++ HL CFTC+ Sbjct: 70 ISPNDLVRRARSKVFHLNCFTCM 92
>LHX5_XENLA (P37137) LIM/homeobox protein Lhx5 (Homeobox protein LIM-5)| (xLIM-5) (xLIM-2A) Length = 402 Score = 28.5 bits (62), Expect = 4.5 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -2 Query: 250 VQPSNTIRQYRAR*EHLGCFTCL 182 + PS+ +R+ R + HL CFTC+ Sbjct: 71 ISPSDLVRKARNKVFHLNCFTCM 93
>HSP7M_SOLTU (Q08276) Heat shock 70 kDa protein, mitochondrial precursor| Length = 682 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/13 (92%), Positives = 12/13 (92%) Frame = +1 Query: 37 DQAPEAEYEEVKK 75 DQ PEAEYEEVKK Sbjct: 670 DQPPEAEYEEVKK 682
>SEM6D_MOUSE (Q76KF0) Semaphorin-6D precursor| Length = 1073 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 82 FFTSSPPRTRPLGPGHRHPATLLP 11 FF SSPP PL GH A +LP Sbjct: 808 FFPSSPPPHSPLSHGHIPSAIVLP 831
>SEM6D_HUMAN (Q8NFY4) Semaphorin-6D precursor| Length = 1073 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 82 FFTSSPPRTRPLGPGHRHPATLLP 11 FF SSPP PL GH A +LP Sbjct: 808 FFPSSPPPHSPLSHGHIPSAIVLP 831
>SEM6D_PONPY (Q5R7F5) Semaphorin-6D precursor| Length = 1017 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 82 FFTSSPPRTRPLGPGHRHPATLLP 11 FF SSPP PL GH A +LP Sbjct: 752 FFPSSPPPHSPLSHGHIPSAIVLP 775 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,679,661 Number of Sequences: 219361 Number of extensions: 496688 Number of successful extensions: 906 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 906 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
