Clone Information

BLAST Search Result

Clone Name	baal3a14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	141	3e-30
2	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	141	3e-30
3	emb\|AL928754.2\|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa...	141	3e-30
4	gb\|AC116523.7\| Mus musculus chromosome 9, clone RP24-349L11, com...	46	0.14
5	gb\|AC164165.2\| Mus musculus BAC clone RP23-145F16 from chromosom...	42	2.2
6	gb\|CP000020.1\| Vibrio fischeri ES114 chromosome I, complete sequ...	42	2.2
7	emb\|BX248416.3\| Zebrafish DNA sequence from clone DKEY-75L1 in l...	42	2.2
8	gb\|AC145550.3\| Mus musculus BAC clone RP23-50A18 from 16, comple...	42	2.2
9	emb\|BX928742.15\| Zebrafish DNA sequence from clone CH211-261F3 i...	42	2.2
10	gb\|AC166056.2\| Mus musculus BAC clone RP23-462A15 from chromosom...	40	8.5
11	ref\|NM_054080.1\| Mus musculus aldo-keto reductase family 1, memb...	40	8.5
12	gb\|AC164613.3\| Mus musculus BAC clone RP23-324B8 from chromosome...	40	8.5
13	gb\|AC122376.4\| Mus musculus BAC clone RP23-472G10 from chromosom...	40	8.5
14	emb\|AJ401232.1\|LCU401232 Lens culinaris subsp. culinaris repetit...	40	8.5
15	ref\|XM_380380.1\| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	8.5
16	ref\|XM_733789.1\| Plasmodium chabaudi chabaudi hypothetical prote...	40	8.5
17	gb\|BC021607.1\| Mus musculus aldo-keto reductase family 1, member...	40	8.5
18	ref\|XM_854791.1\| PREDICTED: Canis familiaris similar to G+C-rich...	40	8.5
19	ref\|XM_535241.2\| PREDICTED: Canis familiaris similar to G+C-rich...	40	8.5
20	ref\|XM_854624.1\| PREDICTED: Canis familiaris similar to G+C-rich...	40	8.5
21	emb\|AL626763.11\| Human DNA sequence from clone RP11-17H4 on chro...	40	8.5
22	emb\|AL445524.28\| Human DNA sequence from clone RP11-295G20 on ch...	40	8.5
23	emb\|AL160060.11\| Human DNA sequence from clone RP11-207K8 on chr...	40	8.5
24	ref\|XM_789278.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	8.5
25	ref\|XM_789251.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	8.5
26	ref\|XM_789232.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	8.5
27	ref\|XM_791894.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	8.5
28	gb\|AC108508.2\| Genomic sequence for Mus musculus, clone RP23-437...	40	8.5
29	emb\|CR753834.5\| Zebrafish DNA sequence from clone DKEY-62E10 in ...	40	8.5
30	gb\|AC148226.7\| Medicago truncatula clone mth2-5i20, complete seq...	40	8.5
31	gb\|AC015674.12\| Homo sapiens chromosome 17, clone RP11-138C9, co...	40	8.5
32	gb\|AC025682.6\| Homo sapiens chromosome 17, clone RP11-580I16, co...	40	8.5
33	emb\|BX323589.10\| Zebrafish DNA sequence from clone DKEY-186H8 in...	40	8.5
34	gb\|AF271269.1\|AF271267S3 Homo sapiens translin-like protein (TRA...	40	8.5
35	dbj\|AK012162.1\| Mus musculus 10 days embryo whole body cDNA, RIK...	40	8.5
36	dbj\|AK037003.1\| Mus musculus adult female vagina cDNA, RIKEN ful...	40	8.5
37	dbj\|AK036937.1\| Mus musculus adult female vagina cDNA, RIKEN ful...	40	8.5
38	emb\|BX816409.1\|CNS0ADDZ Arabidopsis thaliana Full-length cDNA Co...	40	8.5
39	emb\|CT030683.6\| Mouse DNA sequence from clone RP23-22O8 on chrom...	40	8.5
40	gb\|AC002109.1\|AC002109 Genomic sequence from Mouse 9, complete s...	40	8.5
41	emb\|AJ937762.1\| Uncultured gamma proteobacterium fosmid clone b1...	40	8.5
42	dbj\|AP006141.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	8.5
43	emb\|AL844845.7\| Mouse DNA sequence from clone RP23-155C1 on chro...	40	8.5
44	emb\|AL672297.7\| Mouse DNA sequence from clone RP23-137E3 on chro...	40	8.5
45	emb\|AL713995.11\| Mouse DNA sequence from clone RP23-423L9 on chr...	40	8.5

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  141 bits (71), Expect = 3e-30
 Identities = 166/197 (84%), Gaps = 3/197 (1%)
 Strand = Plus / Plus

                                                                            
Query: 327      cagaatgcataataattttcaaatggaggcacgtgttatagttgaggacgtgactgatga 386
                |||||||||||| ||| |||||||||| |||| ||||||||||||||| | ||||||| |
Sbjct: 24981796 cagaatgcataacaatgttcaaatggacgcacctgttatagttgaggatgcgactgataa 24981855

                                                                            
Query: 387      tatgccttcatgcattccgtcatccagacca---attcctcaggttgaaatggcagctga 443
                |  ||||| | |||||| |||||||||||||    ||||||  |||||| ||||||||||
Sbjct: 24981856 tgcgcctttaggcattctgtcatccagaccacttgttcctcttgttgaagtggcagctga 24981915

                                                                            
Query: 444      agagcagcaccatgcaattatgtcatcagagaaggatgatgatgctaagagcgatgggcc 503
                ||| ||||| || |  ||||| ||||||  ||||||||||||||||| ||| |||| |||
Sbjct: 24981916 agaacagcagcaagttattatttcatcactgaaggatgatgatgctaggagtgatgtgcc 24981975

                                 
Query: 504      agagttagctaatgagg 520
                ||||||||| |||||||
Sbjct: 24981976 agagttagccaatgagg 24981992



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                            
Query: 518      aggagcatggtgataaagcagctgcggatgggtccattagtgatgctgagattgccgaac 577
                |||| |||| |||| || ||||||||||||| ||||| ||||||||||   |||| ||||
Sbjct: 24982076 aggatcatgatgatgaaccagctgcggatggatccataagtgatgctgcagttgctgaac 24982135

                                      
Query: 578      ttgaagccagcatgtatggctt 599
                | || |||||||||||||||||
Sbjct: 24982136 tggaggccagcatgtatggctt 24982157



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 602      agatcataagaaatgctgacct 623
                ||||||||||||||||||||||
Sbjct: 24982294 agatcataagaaatgctgacct 24982315



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                            
Query: 84       tgtgtatcaaaatgaaaatttcgaccagttattggggcatacctctggtttggctacctc 143
                |||||||||||||| ||| || ||||||| ||  | ||||| || ||| |||||||||||
Sbjct: 24981574 tgtgtatcaaaatggaaagttggaccagtcatcagtgcataactatggcttggctacctc 24981633

                 
Query: 144      t 144
                |
Sbjct: 24981634 t 24981634

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  141 bits (71), Expect = 3e-30
 Identities = 166/197 (84%), Gaps = 3/197 (1%)
 Strand = Plus / Plus

                                                                            
Query: 327      cagaatgcataataattttcaaatggaggcacgtgttatagttgaggacgtgactgatga 386
                |||||||||||| ||| |||||||||| |||| ||||||||||||||| | ||||||| |
Sbjct: 24910002 cagaatgcataacaatgttcaaatggacgcacctgttatagttgaggatgcgactgataa 24910061

                                                                            
Query: 387      tatgccttcatgcattccgtcatccagacca---attcctcaggttgaaatggcagctga 443
                |  ||||| | |||||| |||||||||||||    ||||||  |||||| ||||||||||
Sbjct: 24910062 tgcgcctttaggcattctgtcatccagaccacttgttcctcttgttgaagtggcagctga 24910121

                                                                            
Query: 444      agagcagcaccatgcaattatgtcatcagagaaggatgatgatgctaagagcgatgggcc 503
                ||| ||||| || |  ||||| ||||||  ||||||||||||||||| ||| |||| |||
Sbjct: 24910122 agaacagcagcaagttattatttcatcactgaaggatgatgatgctaggagtgatgtgcc 24910181

                                 
Query: 504      agagttagctaatgagg 520
                ||||||||| |||||||
Sbjct: 24910182 agagttagccaatgagg 24910198



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                            
Query: 518      aggagcatggtgataaagcagctgcggatgggtccattagtgatgctgagattgccgaac 577
                |||| |||| |||| || ||||||||||||| ||||| ||||||||||   |||| ||||
Sbjct: 24910282 aggatcatgatgatgaaccagctgcggatggatccataagtgatgctgcagttgctgaac 24910341

                                      
Query: 578      ttgaagccagcatgtatggctt 599
                | || |||||||||||||||||
Sbjct: 24910342 tggaggccagcatgtatggctt 24910363



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 602      agatcataagaaatgctgacct 623
                ||||||||||||||||||||||
Sbjct: 24910500 agatcataagaaatgctgacct 24910521



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                            
Query: 84       tgtgtatcaaaatgaaaatttcgaccagttattggggcatacctctggtttggctacctc 143
                |||||||||||||| ||| || ||||||| ||  | ||||| || ||| |||||||||||
Sbjct: 24909780 tgtgtatcaaaatggaaagttggaccagtcatcagtgcataactatggcttggctacctc 24909839

                 
Query: 144      t 144
                |
Sbjct: 24909840 t 24909840

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>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 146686

 Score =  141 bits (71), Expect = 3e-30
 Identities = 166/197 (84%), Gaps = 3/197 (1%)
 Strand = Plus / Minus

                                                                          
Query: 327    cagaatgcataataattttcaaatggaggcacgtgttatagttgaggacgtgactgatga 386
              |||||||||||| ||| |||||||||| |||| ||||||||||||||| | ||||||| |
Sbjct: 125371 cagaatgcataacaatgttcaaatggacgcacctgttatagttgaggatgcgactgataa 125312

                                                                          
Query: 387    tatgccttcatgcattccgtcatccagacca---attcctcaggttgaaatggcagctga 443
              |  ||||| | |||||| |||||||||||||    ||||||  |||||| ||||||||||
Sbjct: 125311 tgcgcctttaggcattctgtcatccagaccacttgttcctcttgttgaagtggcagctga 125252

                                                                          
Query: 444    agagcagcaccatgcaattatgtcatcagagaaggatgatgatgctaagagcgatgggcc 503
              ||| ||||| || |  ||||| ||||||  ||||||||||||||||| ||| |||| |||
Sbjct: 125251 agaacagcagcaagttattatttcatcactgaaggatgatgatgctaggagtgatgtgcc 125192

                               
Query: 504    agagttagctaatgagg 520
              ||||||||| |||||||
Sbjct: 125191 agagttagccaatgagg 125175



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                          
Query: 518    aggagcatggtgataaagcagctgcggatgggtccattagtgatgctgagattgccgaac 577
              |||| |||| |||| || ||||||||||||| ||||| ||||||||||   |||| ||||
Sbjct: 125091 aggatcatgatgatgaaccagctgcggatggatccataagtgatgctgcagttgctgaac 125032

                                    
Query: 578    ttgaagccagcatgtatggctt 599
              | || |||||||||||||||||
Sbjct: 125031 tggaggccagcatgtatggctt 125010



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 602    agatcataagaaatgctgacct 623
              ||||||||||||||||||||||
Sbjct: 124873 agatcataagaaatgctgacct 124852



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                          
Query: 84     tgtgtatcaaaatgaaaatttcgaccagttattggggcatacctctggtttggctacctc 143
              |||||||||||||| ||| || ||||||| ||  | ||||| || ||| |||||||||||
Sbjct: 125593 tgtgtatcaaaatggaaagttggaccagtcatcagtgcataactatggcttggctacctc 125534

               
Query: 144    t 144
              |
Sbjct: 125533 t 125533

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>gb|AC116523.7| Mus musculus chromosome 9, clone RP24-349L11, complete sequence
          Length = 184012

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 210   tggccttttacagagagatgttc 232
             |||||||||||||||||||||||
Sbjct: 73727 tggccttttacagagagatgttc 73705

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>gb|AC164165.2| Mus musculus BAC clone RP23-145F16 from chromosome 16, complete sequence
          Length = 214546

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 190    ggcaatggcaccttcaaggat 210
              |||||||||||||||||||||
Sbjct: 209158 ggcaatggcaccttcaaggat 209178

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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 253     atcatctgcagtgatgtaggg 273
               |||||||||||||||||||||
Sbjct: 1029069 atcatctgcagtgatgtaggg 1029089

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>emb|BX248416.3| Zebrafish DNA sequence from clone DKEY-75L1 in linkage group 22,
             complete sequence
          Length = 155796

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 459   aattatgtcatcagagaagga 479
             |||||||||||||||||||||
Sbjct: 93754 aattatgtcatcagagaagga 93774

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>gb|AC145550.3| Mus musculus BAC clone RP23-50A18 from 16, complete sequence
          Length = 146370

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   ggcaatggcaccttcaaggat 210
             |||||||||||||||||||||
Sbjct: 46075 ggcaatggcaccttcaaggat 46095

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>emb|BX928742.15| Zebrafish DNA sequence from clone CH211-261F3 in linkage group 2,
            complete sequence
          Length = 144719

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ggcagaatgcataataatttt 345
            |||||||||||||||||||||
Sbjct: 8364 ggcagaatgcataataatttt 8384



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ggcagaatgcataataatttt 345
            |||||||||||||||||||||
Sbjct: 7548 ggcagaatgcataataatttt 7568

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>gb|AC166056.2| Mus musculus BAC clone RP23-462A15 from chromosome 13, complete
             sequence
          Length = 198814

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    gctgtgtatcaaaatgaaaa 101
             ||||||||||||||||||||
Sbjct: 41599 gctgtgtatcaaaatgaaaa 41618

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>ref|NM_054080.1| Mus musculus aldo-keto reductase family 1, member C20 (Akr1c20),
           mRNA
          Length = 1306

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  gctgtgtatcaaaatgaaaa 101
           ||||||||||||||||||||
Sbjct: 176 gctgtgtatcaaaatgaaaa 195

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>gb|AC164613.3| Mus musculus BAC clone RP23-324B8 from chromosome 13, complete sequence
          Length = 197469

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     gctgtgtatcaaaatgaaaa 101
              ||||||||||||||||||||
Sbjct: 158581 gctgtgtatcaaaatgaaaa 158600

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>gb|AC122376.4| Mus musculus BAC clone RP23-472G10 from chromosome 7, complete sequence
          Length = 183918

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    attcctcaggttgaaatggc 437
              ||||||||||||||||||||
Sbjct: 177933 attcctcaggttgaaatggc 177914

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>emb|AJ401232.1|LCU401232 Lens culinaris subsp. culinaris repetitive DNA, clone pLc30
          Length = 466

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tgtttggcaatggcaccttc 204
           ||||||||||||||||||||
Sbjct: 329 tgtttggcaatggcaccttc 348

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>ref|XM_380380.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00204.1)
            partial mRNA
          Length = 4233

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  ttggcaatggcaccttcaag 207
            ||||||||||||||||||||
Sbjct: 2306 ttggcaatggcaccttcaag 2287

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>ref|XM_733789.1| Plasmodium chabaudi chabaudi hypothetical protein (PC107071.00.0)
           partial mRNA
          Length = 65

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 atgcataataattttcaaat 350
           ||||||||||||||||||||
Sbjct: 10  atgcataataattttcaaat 29

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>gb|BC021607.1| Mus musculus aldo-keto reductase family 1, member C20, mRNA (cDNA
           clone MGC:37825 IMAGE:5098938), complete cds
          Length = 1212

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  gctgtgtatcaaaatgaaaa 101
           ||||||||||||||||||||
Sbjct: 172 gctgtgtatcaaaatgaaaa 191

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>ref|XM_854791.1| PREDICTED: Canis familiaris similar to G+C-rich promoter-binding
            protein, transcript variant 7 (LOC478062), mRNA
          Length = 3290

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  tcagagaaggatgatgatgc 488
            ||||||||||||||||||||
Sbjct: 2043 tcagagaaggatgatgatgc 2062

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>ref|XM_535241.2| PREDICTED: Canis familiaris similar to G+C-rich promoter-binding
            protein, transcript variant 1 (LOC478062), mRNA
          Length = 3470

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  tcagagaaggatgatgatgc 488
            ||||||||||||||||||||
Sbjct: 2223 tcagagaaggatgatgatgc 2242

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>ref|XM_854624.1| PREDICTED: Canis familiaris similar to G+C-rich promoter-binding
            protein, transcript variant 3 (LOC478062), mRNA
          Length = 3410

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  tcagagaaggatgatgatgc 488
            ||||||||||||||||||||
Sbjct: 2163 tcagagaaggatgatgatgc 2182

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>emb|AL626763.11| Human DNA sequence from clone RP11-17H4 on chromosome 1 Contains the
            3' end of the TSNAX gene for translin-associated factor
            X, a novel gene, the 5' end of the DISC1 gene for
            disrupted in schizophrenia 1 and a CpG island, complete
            sequence
          Length = 69203

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   ctgtgtatcaaaatgaaaat 102
            ||||||||||||||||||||
Sbjct: 1291 ctgtgtatcaaaatgaaaat 1310

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>emb|AL445524.28| Human DNA sequence from clone RP11-295G20 on chromosome 1 Contains the 5'
              end of the EGLN1 gene for egl nine homolog 1 (C. elegans),
              a small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
              (SNRPD2) pseudogene, a novel gene, the 5' end of the TSNAX
              gene for translin-associated factor X and a CpG island,
              complete sequence
          Length = 154073

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ctgtgtatcaaaatgaaaat 102
              ||||||||||||||||||||
Sbjct: 153362 ctgtgtatcaaaatgaaaat 153381

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>emb|AL160060.11| Human DNA sequence from clone RP11-207K8 on chromosome 10 Contains part
              of the SVIL gene for supervillin (archvillin), complete
              sequence
          Length = 171800

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 553    attagtgatgctgagattgc 572
              ||||||||||||||||||||
Sbjct: 108700 attagtgatgctgagattgc 108719

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>ref|XM_789278.1| PREDICTED: Strongylocentrotus purpuratus similar to zn-finger, CCHC
            type and RNA-directed DNA polymerase  and Integrase,
            catalytic domain containing protein family member (1E419)
            (LOC589642), partial mRNA
          Length = 3390

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  tcagcacaatatcatctgcagtga 266
            ||||||||||||||||| ||||||
Sbjct: 2539 tcagcacaatatcatcttcagtga 2516

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>ref|XM_789251.1| PREDICTED: Strongylocentrotus purpuratus similar to zn-finger, CCHC
            type and RNA-directed DNA polymerase  and Integrase,
            catalytic domain containing protein family member (1E419)
            (LOC589613), mRNA
          Length = 3525

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  tcagcacaatatcatctgcagtga 266
            ||||||||||||||||| ||||||
Sbjct: 2398 tcagcacaatatcatcttcagtga 2375

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>ref|XM_789232.1| PREDICTED: Strongylocentrotus purpuratus similar to zn-finger, CCHC
            type and RNA-directed DNA polymerase  and Integrase,
            catalytic domain containing protein family member (1E419)
            (LOC589593), mRNA
          Length = 2832

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  tcagcacaatatcatctgcagtga 266
            ||||||||||||||||| ||||||
Sbjct: 1792 tcagcacaatatcatcttcagtga 1769

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>ref|XM_791894.1| PREDICTED: Strongylocentrotus purpuratus similar to zn-finger, CCHC
            type and RNA-directed DNA polymerase  and Integrase,
            catalytic domain containing protein family member (1E419)
            (LOC592368), partial mRNA
          Length = 1488

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  tcagcacaatatcatctgcagtga 266
            ||||||||||||||||| ||||||
Sbjct: 1327 tcagcacaatatcatcttcagtga 1304

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>gb|AC108508.2| Genomic sequence for Mus musculus, clone RP23-437O14, complete sequence
          Length = 196162

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    tttacagagagatgttcctg 235
              ||||||||||||||||||||
Sbjct: 182709 tttacagagagatgttcctg 182690

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>emb|CR753834.5| Zebrafish DNA sequence from clone DKEY-62E10 in linkage group 5,
             complete sequence
          Length = 66261

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gccttttacagagagatgtt 231
             ||||||||||||||||||||
Sbjct: 20515 gccttttacagagagatgtt 20496

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>gb|AC148226.7| Medicago truncatula clone mth2-5i20, complete sequence
          Length = 84259

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 456   tgcaattatgtcatcagagaaggatgat 483
             |||| ||||| |||||||||||||||||
Sbjct: 12930 tgcatttatgacatcagagaaggatgat 12903

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>gb|AC015674.12| Homo sapiens chromosome 17, clone RP11-138C9, complete sequence
          Length = 187822

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    tgatgtaggggtaattggat 283
              ||||||||||||||||||||
Sbjct: 149065 tgatgtaggggtaattggat 149084

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>gb|AC025682.6| Homo sapiens chromosome 17, clone RP11-580I16, complete sequence
          Length = 158135

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  tgatgtaggggtaattggat 283
            ||||||||||||||||||||
Sbjct: 8850 tgatgtaggggtaattggat 8869

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>emb|BX323589.10| Zebrafish DNA sequence from clone DKEY-186H8 in linkage group 5,
             complete sequence
          Length = 135266

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gccttttacagagagatgtt 231
             ||||||||||||||||||||
Sbjct: 29261 gccttttacagagagatgtt 29242

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>gb|AF271269.1|AF271267S3 Homo sapiens translin-like protein (TRAX) gene, exons 4, 5, 6, and
             complete cds
          Length = 24360

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ctgtgtatcaaaatgaaaat 102
             ||||||||||||||||||||
Sbjct: 20268 ctgtgtatcaaaatgaaaat 20287

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>dbj|AK012162.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610528B18
           product:hydroxysteroid 17-beta dehydrogenase 1, full
           insert sequence
          Length = 1306

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  gctgtgtatcaaaatgaaaa 101
           ||||||||||||||||||||
Sbjct: 176 gctgtgtatcaaaatgaaaa 195

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>dbj|AK037003.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930035N15 product:unclassifiable, full
            insert sequence
          Length = 3860

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  acgaggacatgattctgaag 324
            ||||||||||||||||||||
Sbjct: 1814 acgaggacatgattctgaag 1795

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>dbj|AK036937.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930028C19 product:unclassifiable, full
            insert sequence
          Length = 3861

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  acgaggacatgattctgaag 324
            ||||||||||||||||||||
Sbjct: 1810 acgaggacatgattctgaag 1791

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>emb|BX816409.1|CNS0ADDZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH46ZG10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1712

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  accttcaaggatggcctttt 218
            ||||||||||||||||||||
Sbjct: 1048 accttcaaggatggcctttt 1029

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>emb|CT030683.6| Mouse DNA sequence from clone RP23-22O8 on chromosome 9, complete
             sequence
          Length = 126280

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 206   aggatggccttttacagagagatg 229
             |||| |||||||||||||||||||
Sbjct: 60376 aggagggccttttacagagagatg 60399

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>gb|AC002109.1|AC002109 Genomic sequence from Mouse 9, complete sequence
          Length = 160048

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 206   aggatggccttttacagagagatg 229
             |||| |||||||||||||||||||
Sbjct: 94106 aggagggccttttacagagagatg 94083

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>emb|AJ937762.1| Uncultured gamma proteobacterium fosmid clone b1bcf1.1.c04
          Length = 38209

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   tcatctgcagtgatgtaggg 273
             ||||||||||||||||||||
Sbjct: 13789 tcatctgcagtgatgtaggg 13808

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>dbj|AP006141.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT01N13, TM0247,
             complete sequence
          Length = 101110

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   accaattcctcaggttgaaa 433
             ||||||||||||||||||||
Sbjct: 52172 accaattcctcaggttgaaa 52153

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>emb|AL844845.7| Mouse DNA sequence from clone RP23-155C1 on chromosome 2, complete
             sequence
          Length = 112100

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   acgaggacatgattctgaag 324
             ||||||||||||||||||||
Sbjct: 29873 acgaggacatgattctgaag 29854

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>emb|AL672297.7| Mouse DNA sequence from clone RP23-137E3 on chromosome X, complete
              sequence
          Length = 195519

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    gaaatggcagctgaagagca 449
              ||||||||||||||||||||
Sbjct: 157147 gaaatggcagctgaagagca 157128

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>emb|AL713995.11| Mouse DNA sequence from clone RP23-423L9 on chromosome 4, complete
             sequence
          Length = 103260

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   tttacagagagatgttcctg 235
             ||||||||||||||||||||
Sbjct: 16144 tttacagagagatgttcctg 16125


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,900,983
Number of Sequences: 3902068
Number of extensions: 5900983
Number of successful extensions: 115629
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115457
Number of HSP's gapped (non-prelim): 169
length of query: 625
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 602
effective length of database: 17,143,297,704
effective search space: 10320265217808
effective search space used: 10320265217808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result