No.
Definition
Score (bits)
E Value
1 ref|XM_470395.1| Oryza sativa (japonica cultivar-group), mRNA
480
e-132
2 ref|XM_470394.1| Oryza sativa (japonica cultivar-group), mRNA
480
e-132
3 dbj|AK100284.1| Oryza sativa (japonica cultivar-group) cDNA clon...
480
e-132
4 gb|AY106668.1| Zea mays PCO087459 mRNA sequence
357
2e-95
5 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
153
6e-34
6 gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom...
153
6e-34
7 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
153
6e-34
8 emb|BX897696.12| Zebrafish DNA sequence from clone DKEY-111B14 i...
44
0.40
9 gb|AF241734.2| Homo sapiens chromosome X clone RP1-34M10 map p11...
42
1.6
10 gb|AC108881.3| Homo sapiens chromosome X clone RP11-21D3 map p11...
42
1.6
11 gb|AC175363.2| Pan troglodytes chromosome X clone CH251-7A1 map ...
42
1.6
12 emb|AL670662.7| Human DNA sequence from clone XXbac-93B10 on chr...
42
1.6
13 gb|AC101689.12| Mus musculus chromosome 1, clone RP23-217C21, co...
40
6.3
14 gb|AC161042.4| Mus musculus chromosome 8, clone RP24-278L20, com...
40
6.3
15 gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, co...
40
6.3
16 emb|Y15839.1|CHY15839 Cochliobolus heterostrophus pkc1, fat1 genes
40
6.3
17 gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, com...
40
6.3
18 emb|CR859591.1| Pongo pygmaeus mRNA; cDNA DKFZp468N195 (from clo...
40
6.3
19 gb|AC102433.8| Mus musculus chromosome 8, clone RP24-119F15, com...
40
6.3
20 gb|AC154685.2| Mus musculus BAC clone RP24-321G16 from chromosom...
40
6.3
21 gb|AC135324.4| Homo sapiens chromosome 8, clone RP11-42L22, comp...
40
6.3
22 gb|AF132039.1|AF132039 Mus musculus BAC 118I7 chromosome 6 Gpr37...
40
6.3
23 gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
40
6.3
24 gb|AC165153.2| Mus musculus BAC clone RP23-359L1 from chromosome...
40
6.3
25 gb|AC153888.3| Mus musculus 6 BAC RP23-428L22 (Roswell Park Canc...
40
6.3
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 153 bits (77), Expect = 6e-34
Identities = 104/113 (92%)
Strand = Plus / Minus
Query: 285 ggaaattatcatctcactggtctcgtacatatctctgaggtctcttgggatcttgtccaa 344
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 35218670 ggaaattatcatcttactggccttgtacatatctctgaggtctcttgggatcttgtccaa 35218611
Query: 345 gatgtccaagattttctaaccgaaggtgataccgtcaaggtcatagtggtgaa 397
||||||| |||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 35218610 gatgtccgggattttttaaatgaaggtgatactgtcaaggtcatagtggtgaa 35218558
Score = 129 bits (65), Expect = 9e-27
Identities = 118/133 (88%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 155 gcttgtcttctctgagaaggatgccagttggt-cattgtactcttctcaagtaaagattg 213
|||||||||||| ||||||||||| ||||||| || | | ||||||| ||| |||||||
Sbjct: 35218879 gcttgtcttctcagagaaggatgcaagttggttcactc-attcttctctagtcaagattg 35218821
Query: 214 gtggtatctatgatggaattgttggttcagtgttccactatggtgcatttgttcacctgc 273
||| |||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct: 35218820 gtgctatctatgatggaattgtcggttcagttttccactacggtgcatttgttcatctgc 35218761
Query: 274 aatttcctgatgg 286
||||||||||||
Sbjct: 35218760 gatttcctgatgg 35218748
Score = 93.7 bits (47), Expect = 5e-16
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 5 caactccatgcagggcttcgtgcccaaccctctcctcagccccgcgcattggtgtaaag 63
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 35219534 caactccctccagggcttcgtgcccaaccctctccttagccccgcgcattggtgtaaag 35219476
Score = 79.8 bits (40), Expect = 7e-12
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 407 ggagaaatcaaggataggtttgtcaatcaggcaattggaggaagatcctctgctggagac 466
|||||| |||||||||| ||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 35218092 ggagaagtcaaggatagctttatcaatcagacaattggaggaagatcctctactggagac 35218033
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 69 aaaaggcccattcaagatgttacaaaggacctagtaggttcctctgtttctgtcaaggt 127
|||||||||||||||||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 35219319 aaaaggcccattcaagatgttacaaaggaccttgtgggttcttccatttctgtcaaggt 35219261
>gb|AC092852.6 | Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
sequence
Length = 156606
Score = 153 bits (77), Expect = 6e-34
Identities = 104/113 (92%)
Strand = Plus / Minus
Query: 285 ggaaattatcatctcactggtctcgtacatatctctgaggtctcttgggatcttgtccaa 344
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 97431 ggaaattatcatcttactggccttgtacatatctctgaggtctcttgggatcttgtccaa 97372
Query: 345 gatgtccaagattttctaaccgaaggtgataccgtcaaggtcatagtggtgaa 397
||||||| |||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 97371 gatgtccgggattttttaaatgaaggtgatactgtcaaggtcatagtggtgaa 97319
Score = 129 bits (65), Expect = 9e-27
Identities = 118/133 (88%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 155 gcttgtcttctctgagaaggatgccagttggt-cattgtactcttctcaagtaaagattg 213
|||||||||||| ||||||||||| ||||||| || | | ||||||| ||| |||||||
Sbjct: 97640 gcttgtcttctcagagaaggatgcaagttggttcactc-attcttctctagtcaagattg 97582
Query: 214 gtggtatctatgatggaattgttggttcagtgttccactatggtgcatttgttcacctgc 273
||| |||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct: 97581 gtgctatctatgatggaattgtcggttcagttttccactacggtgcatttgttcatctgc 97522
Query: 274 aatttcctgatgg 286
||||||||||||
Sbjct: 97521 gatttcctgatgg 97509
Score = 93.7 bits (47), Expect = 5e-16
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 5 caactccatgcagggcttcgtgcccaaccctctcctcagccccgcgcattggtgtaaag 63
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 98295 caactccctccagggcttcgtgcccaaccctctccttagccccgcgcattggtgtaaag 98237
Score = 79.8 bits (40), Expect = 7e-12
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 407 ggagaaatcaaggataggtttgtcaatcaggcaattggaggaagatcctctgctggagac 466
|||||| |||||||||| ||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 96853 ggagaagtcaaggatagctttatcaatcagacaattggaggaagatcctctactggagac 96794
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 69 aaaaggcccattcaagatgttacaaaggacctagtaggttcctctgtttctgtcaaggt 127
|||||||||||||||||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 98080 aaaaggcccattcaagatgttacaaaggaccttgtgggttcttccatttctgtcaaggt 98022
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 153 bits (77), Expect = 6e-34
Identities = 104/113 (92%)
Strand = Plus / Minus
Query: 285 ggaaattatcatctcactggtctcgtacatatctctgaggtctcttgggatcttgtccaa 344
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 35308742 ggaaattatcatcttactggccttgtacatatctctgaggtctcttgggatcttgtccaa 35308683
Query: 345 gatgtccaagattttctaaccgaaggtgataccgtcaaggtcatagtggtgaa 397
||||||| |||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 35308682 gatgtccgggattttttaaatgaaggtgatactgtcaaggtcatagtggtgaa 35308630
Score = 129 bits (65), Expect = 9e-27
Identities = 118/133 (88%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 155 gcttgtcttctctgagaaggatgccagttggt-cattgtactcttctcaagtaaagattg 213
|||||||||||| ||||||||||| ||||||| || | | ||||||| ||| |||||||
Sbjct: 35308951 gcttgtcttctcagagaaggatgcaagttggttcactc-attcttctctagtcaagattg 35308893
Query: 214 gtggtatctatgatggaattgttggttcagtgttccactatggtgcatttgttcacctgc 273
||| |||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct: 35308892 gtgctatctatgatggaattgtcggttcagttttccactacggtgcatttgttcatctgc 35308833
Query: 274 aatttcctgatgg 286
||||||||||||
Sbjct: 35308832 gatttcctgatgg 35308820
Score = 93.7 bits (47), Expect = 5e-16
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 5 caactccatgcagggcttcgtgcccaaccctctcctcagccccgcgcattggtgtaaag 63
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 35309606 caactccctccagggcttcgtgcccaaccctctccttagccccgcgcattggtgtaaag 35309548
Score = 79.8 bits (40), Expect = 7e-12
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 407 ggagaaatcaaggataggtttgtcaatcaggcaattggaggaagatcctctgctggagac 466
|||||| |||||||||| ||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 35308164 ggagaagtcaaggatagctttatcaatcagacaattggaggaagatcctctactggagac 35308105
Score = 77.8 bits (39), Expect = 3e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 69 aaaaggcccattcaagatgttacaaaggacctagtaggttcctctgtttctgtcaaggt 127
|||||||||||||||||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 35309391 aaaaggcccattcaagatgttacaaaggaccttgtgggttcttccatttctgtcaaggt 35309333
>gb|AC153888.3 | Mus musculus 6 BAC RP23-428L22 (Roswell Park Cancer Institute (C57BL/6J
Female) Mouse6 BAC Library) complete sequence
Length = 178961
Score = 40.1 bits (20), Expect = 6.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 101 agtaggttcctctgtttctg 120
||||||||||||||||||||
Sbjct: 77948 agtaggttcctctgtttctg 77967
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,830,600
Number of Sequences: 3902068
Number of extensions: 3830600
Number of successful extensions: 68233
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68138
Number of HSP's gapped (non-prelim): 90
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)