>NOS2A_HUMAN (P35228) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type|
           II) (Inducible NO synthase) (Inducible NOS) (iNOS)
           (Hepatocyte NOS) (HEP-NOS)
          Length = 1153

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -3

Query: 324 LTKWRRGKEAFDFFNMKTRDKLNQQAIIQPSARPPV-TNLGCHVLQGFN-LPLDHLPTCL 151
           L+K      A + F M+ + + N Q+    S+R  +   L C   QG N LP +HL  C 
Sbjct: 720 LSKALSSMHAKNVFTMRLKSRQNLQS--PTSSRATILVELSCEDGQGLNYLPGEHLGVCP 777

Query: 150 GGSCIAFSGIEQGLVELLLPPQQIR 76
           G       GI + +V+   P Q +R
Sbjct: 778 GNQPALVQGILERVVDGPTPHQTVR 802

>TPR_HUMAN (P12270) Nucleoprotein TPR|
          Length = 2349

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 13/38 (34%), Positives = 27/38 (71%)
 Frame = +1

Query: 85   LRREEEFYESLFDSAKGDAAAAKTRGQMIERKIEALED 198
            +RRE+E  E+ F+ A+ ++   + R +++ER+++ LED
Sbjct: 1203 IRREKEIAETRFEVAQVESLRYRQRVELLERELQELED 1240

>COQ4_CAEEL (P91428) Ubiquinone biosynthesis protein coq-4|
          Length = 263

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +1

Query: 133 GDAAAAKTRGQMIERKIEALEDMATKVSNRRSRRWLN--DRLLIELVPRLHVEEIKGLFA 306
           G     K R ++++R +  + + AT      +  W N  ++ L E+   L++  +  L  
Sbjct: 173 GARLLTKNRQELVDRNLPWVVEQATNARFFMAFDWENHFEKQLSEVQKELNITPLSELLD 232

Query: 307 PPPFGEEAPLSAFCRTSVGEWDAFRSIDM 393
            P    + P   F +   G W   +++DM
Sbjct: 233 LPEMEPDVPDILFSKGHPGFWRVLQAVDM 261

>SEY1_NEUCR (Q9P5X6) Protein sey-1|
          Length = 862

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 367 WDAFRSIDMDVEARFMQRMKQSSAKQKNLMNEDELIVLNAWRRI-DCQTREAMKRNFLPE 543
           W AF SI  + E+RF  R K   A    +      +   +W  + +    E M+ N L +
Sbjct: 554 WKAFISIVGEAESRFTDRAKSFEASDDEVQVGLWRLRRKSWVALREKIEEEVMESNILMK 613

Query: 544 LLEIYEERIRAFIEDNIDK 600
           L E +E++ R + ED + +
Sbjct: 614 LRENFEDKFR-YDEDGVPR 631

>HSLV_PHOLL (Q7MYC2) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 175

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +1

Query: 61  STMASADLLRREEEFYESLFDSAKGDAAAAKTRGQMIERKIEALEDMATKVSNRRSRRWL 240
           +T+   ++ +    + + +     G  A A T  ++ ERK+E  +   TK +   ++ W 
Sbjct: 24  NTVMKGNVRKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLTKAAVELAKDWR 83

Query: 241 NDRLLIELVPRLHVEE 288
            DR+L +L   L V +
Sbjct: 84  TDRMLRKLEALLAVAD 99

>NO70_SOYBN (Q02920) Early nodulin 70|
          Length = 485

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 210 LGCHVLQGFNLPLDHLPTCLGGSCIAFSGIEQGLVELLLPP 88
           L C ++ G  L +  +P C+G + +A    E GL   ++PP
Sbjct: 70  LKCDLMAGLTLAIFAIPQCMGNATLARLSPEYGLYTGIVPP 110

>HSLV_YERPS (Q66G84) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 173

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 133 GDAAAAKTRGQMIERKIEALEDMATKVSNRRSRRWLNDRLLIELVPRLHVEE 288
           G  A A T  ++ ERK+E  +   TK +   ++ W  DR+L +L   L V +
Sbjct: 48  GGTADAFTLFELFERKLEMHQGHLTKAAVELAKDWRTDRMLRKLEALLAVAD 99

>HSLV_YERPE (Q8ZJJ4) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 173

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 133 GDAAAAKTRGQMIERKIEALEDMATKVSNRRSRRWLNDRLLIELVPRLHVEE 288
           G  A A T  ++ ERK+E  +   TK +   ++ W  DR+L +L   L V +
Sbjct: 48  GGTADAFTLFELFERKLEMHQGHLTKAAVELAKDWRTDRMLRKLEALLAVAD 99

>TPM4_MOUSE (Q6IRU2) Tropomyosin alpha-4 chain (Tropomyosin-4)|
          Length = 247

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 85  LRREEEFYESLFDSAKGDAAAAKTRGQMIERKIE-ALEDMATKVSN 219
           L+RE +      + A+GDAAA   R Q++E +++ A E +AT + N
Sbjct: 30  LQRELDGERERREKAEGDAAALNRRIQLLEEELDRAQEQLATALQN 75

>ZN566_PANTR (Q6J6I6) Zinc finger protein 566|
          Length = 418

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 396 R*GKIYATDETIISEAEESYE*R*VNCAECLASYRLPNKRSYEEKLPT 539
           R G  +AT E II   E+ YE     C EC  S+R P++ ++ +K+ T
Sbjct: 181 RHGSQFATHE-IIHTTEKPYE-----CKECGKSFRHPSRLTHHQKIHT 222

>RPOB_MYCS5 (Q4A5S7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1203

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 309 RGKEAFDFFNMKTRDKLNQQAIIQPSARPPVTNLGCHVLQG 187
           R  +  D +N+K  +K NQ  IIQ   + P+  +G HV +G
Sbjct: 739 RTAKKIDTYNLKNFEKSNQGTIIQ---QKPIVKVGDHVKEG 776

>RDGC_XANCP (Q8P3H3) Recombination-associated protein rdgC|
          Length = 302

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 166 MIERKIEALEDMATKVSNRRSRRWLNDRLLIELVPRLHVE 285
           ++ERK+  +E+   +    ++R+ L D L+ EL+PR  V+
Sbjct: 81  LLERKVAEIEEKEGRRPGGKARKRLKDDLIHELLPRAFVK 120

>MUKF_PHOLL (Q7N6B9) Chromosome partition protein mukF|
          Length = 440

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +1

Query: 382 SIDMDVEARFMQRMKQSSAKQKNLMNEDELIVLNAWRRIDCQTREAMKRN-----FLPEL 546
           +IDMD    F QR++QS   Q    N   L + NA R +D +  E   RN      LP  
Sbjct: 288 AIDMDKNRIFSQRLRQS--VQHYFDNPWTLTIANAERLLDMRDEELTLRNEEVTGELPLA 345

Query: 547 LEIYEE 564
           LE YEE
Sbjct: 346 LE-YEE 350

>RDGC_XANAC (Q8PEW7) Recombination-associated protein rdgC|
          Length = 301

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 166 MIERKIEALEDMATKVSNRRSRRWLNDRLLIELVPRLHVE 285
           ++ERK+  +E+   +    ++R+ L D L+ EL+PR  V+
Sbjct: 81  LLERKVAEIEEKEGRRPGGKARKRLKDDLIHELLPRAFVK 120

>KDUI_YERPE (Q8ZFH8) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC|
           5.3.1.17) (5-keto-4-deoxyuronate isomerase) (DKI
           isomerase)
          Length = 278

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 26/124 (20%), Positives = 49/124 (39%)
 Frame = +1

Query: 118 FDSAKGDAAAAKTRGQMIERKIEALEDMATKVSNRRSRRWLNDRLLIELVPRLHVEEIKG 297
           ++SA         +  + E   + L D AT  SNRR+   +N  ++ +++P   +     
Sbjct: 128 YNSAPAHTTYPNKKITLAEASPQTLGDDAT--SNRRT---INKYIVPDVLPTCQLSMGLT 182

Query: 298 LFAPPPFGEEAPLSAFCRTSVGEWDAFRSIDMDVEARFMQRMKQSSAKQKNLMNEDELIV 477
             AP       P    C T     + +   DMD E      M Q    +  L++ ++ ++
Sbjct: 183 KLAPGSLWNTMP----CHTHERRMEVYFYFDMDEETAVFHMMGQPQETRHLLVHNEQAVI 238

Query: 478 LNAW 489
             +W
Sbjct: 239 SPSW 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,033,618
Number of Sequences: 219361
Number of extensions: 1581449
Number of successful extensions: 4730
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4728
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)