ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2k01 |
|---|---|
| Clone Library Name | barley_pub |
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/42 (61%), Positives = 32/42 (76%) Frame = +1 Query: 7 VRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 132 ++M+R+EFELTMAL GC LS+ITR HI TE D R LPR+ Sbjct: 327 LQMLRDEFELTMALSGCRSLSEITRNHIVTEWD-TPRHLPRL 367
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 46.6 bits (109), Expect = 5e-05 Identities = 23/42 (54%), Positives = 30/42 (71%) Frame = +1 Query: 7 VRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 132 ++M+R+EFELTMAL GC L +I+R HI TE D RP R+ Sbjct: 327 LQMLRDEFELTMALSGCRSLKEISRNHITTEWD-TPRPSARL 367
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = +1 Query: 7 VRMMREEFELTMALGGCTKLSDITREHIFTEGD 105 ++MMR+EFELTMAL GC L +I+R HI + D Sbjct: 327 LQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5| Length = 453 Score = 34.3 bits (77), Expect = 0.25 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 402 NTIWCSRCEIWWKWRDVPVDKY 337 N+ WC C + W+WR +P D Y Sbjct: 412 NSEWCGLCNLCWQWRKLPADYY 433
>CLTR2_PIG (Q95N03) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 345 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Frame = +3 Query: 348 PARLAISTIFRTDYTILYFHVLLGPHVY---THRFCIYHTLSSSKAYLDTGIIWIHVELI 518 P R+ +++ Y+ +YF +L + H F + HT S A++ G+IWI + Sbjct: 111 PCRIMSYSMYVNMYSSIYFLTVLSVVRFLATVHPFRLLHTTSIKNAWILCGVIWIFIMAS 170 Query: 519 KVQALLQGGRLVD 557 L G D Sbjct: 171 STVLLKNGSEQKD 183
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 31.6 bits (70), Expect = 1.6 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 3/91 (3%) Frame = +3 Query: 15 DAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXX---XXXXXXXA 185 D V A A R QAQ H+H PP PAA ++ H A Sbjct: 78 DRQRVMALQTALRRAQAQDEQRALHMHEV-PPANPAATTLLSHHHHVAAPAHVHAHHVHA 136 Query: 186 GHMHASQYPPQRNATHAIITANSISTTPSAP 278 H H + + H A + + PSAP Sbjct: 137 HHAHGGHHSHHGHVLHHQQAAAAAAAAPSAP 167
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 8/46 (17%) Frame = +3 Query: 6 GAHDAGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 119 G AGG A HHG R H H HP +H H+ PP P Sbjct: 199 GMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 8/46 (17%) Frame = +3 Query: 6 GAHDAGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 119 G AGG A HHG R H H HP +H H+ PP P Sbjct: 201 GMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 8/46 (17%) Frame = +3 Query: 6 GAHDAGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 119 G AGG A HHG R H H HP +H H+ PP P Sbjct: 201 GMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X| Length = 462 Score = 30.4 bits (67), Expect = 3.6 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = +3 Query: 9 AHDAGGVRAHHGARRVHQAQRHHPRTHLHRG 101 AHD G HHG + HH H H G Sbjct: 89 AHDHGHAHDHHGHSHDEEEDHHHGHAHDHHG 119
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -3 Query: 331 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 203 N+S++ +RPRPD++ HL D V D+ + ++ + + G YW Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -3 Query: 331 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 203 N+S+T ++PRPD++ HL D V D+ + ++ + + G YW Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289
>CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 309 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Frame = +3 Query: 354 RLAISTIFRTDYTILYFHVLLGP---HVYTHRFCIYHTLSSSKAYLDTGIIWIHVELIKV 524 R+ +++ YT +YF +L H F ++H S A++ GIIW+ + Sbjct: 96 RVMSYSLYVNMYTSIYFLTVLSVVRFQATVHPFRMFHVTSVRSAWILCGIIWVFIMASSA 155 Query: 525 QALLQG 542 L+ G Sbjct: 156 LLLVNG 161
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 30.0 bits (66), Expect = 4.8 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 12/102 (11%) Frame = +3 Query: 6 GAHDAGGVRAHHGARRVHQAQRHHPRT-----------HLHRGRPPRTPAAEDVIKSQRH 152 GA DA AHH ++ HQ Q H + H H + P + + + + H Sbjct: 655 GASDALSEDAHHQQQQHHQQQHQHQQQHHQQQHLHQQHHHHLQQQPNSGSNSNPASNDHH 714 Query: 153 XXXXXXXXXXAGHMHASQYPPQRNATHAIIT-ANSISTTPSA 275 H H +P + H T +NS S+TP+A Sbjct: 715 HGHHL-------HGHGLLHPSSAHHLHHQTTESNSNSSTPTA 749
>MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor| Length = 61 Score = 29.6 bits (65), Expect = 6.2 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -2 Query: 455 MINTESMSVYVRTQ*DMEIQYGVVGAKYGGNGETCRSTSTQKFIYYGSPSPAGHTRLAS 279 M N +S+ Y Q D + VVG KY GNG C T + + +G + AG RLA+ Sbjct: 1 MTNMKSVEAY--QQLDNQNLKKVVGGKYYGNGVHC--TKSGCSVNWGEAASAGIHRLAN 55
>PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty| acyltransferase 5) Length = 374 Score = 29.6 bits (65), Expect = 6.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 456 YDKYRIDECIRADPIGHGNTIWCSRCE 376 YD +C ++DP HG IWCS C+ Sbjct: 111 YDAVVPPKCYQSDP--HGYPIWCSECQ 135
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 29.6 bits (65), Expect = 6.2 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = +3 Query: 33 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 119 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.6 bits (65), Expect = 6.2 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = +3 Query: 33 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 119 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>SYT_MANSM (Q65TQ0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 643 Score = 29.3 bits (64), Expect = 8.1 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 7/88 (7%) Frame = +3 Query: 324 DKFLRTCRPARLAI--STIFRTDYTILYFH-----VLLGPHVYTHRFCIYHTLSSSKAYL 482 D F + P ++AI I + D+ LY H + GPHV RFC + L Sbjct: 146 DTFEKRGEPYKMAILDENIAKDDHPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKV---- 201 Query: 483 DTGIIWIHVELIKVQALLQGGRLVDKKK 566 G W K+ + G DKK+ Sbjct: 202 -AGAYWRGDSKNKMLQRIYGTAWADKKQ 228
>DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 434 Score = 29.3 bits (64), Expect = 8.1 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -3 Query: 379 RNMVEMARRAGRQVRKNLSTTAHRPRP--DTHG*HLGADGVVDIEFAVIIACVALRCGGY 206 RN E+ARRAGR + + A RP P DT + AD + D+ I V GGY Sbjct: 24 RNAEEIARRAGRGI-EVAQIAARRPNPKCDTGATPITAD-IFDVACNPEIDVVVELIGGY 81 Query: 205 WLA 197 LA Sbjct: 82 TLA 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,192,083 Number of Sequences: 219361 Number of extensions: 1530754 Number of successful extensions: 4383 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4327 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
