ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2k01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 6e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcaccaagctca 67 |||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 32328040 tgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgcacctcgctcg 32328099 Query: 68 gcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 112 |||||||||||||| ||||||| |||||| | ||||||||||| Sbjct: 32328100 ccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 32328144
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 113 bits (57), Expect = 6e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcaccaagctca 67 |||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 61807 tgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgcacctcgctcg 61866 Query: 68 gcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 112 |||||||||||||| ||||||| |||||| | ||||||||||| Sbjct: 61867 ccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 61911
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 6e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcaccaagctca 67 |||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 32418550 tgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgcacctcgctcg 32418609 Query: 68 gcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 112 |||||||||||||| ||||||| |||||| | ||||||||||| Sbjct: 32418610 ccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 32418654
>dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N09, full insert sequence Length = 1526 Score = 113 bits (57), Expect = 6e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcaccaagctca 67 |||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 1058 tgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgcacctcgctcg 1117 Query: 68 gcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 112 |||||||||||||| ||||||| |||||| | ||||||||||| Sbjct: 1118 ccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1162
>dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E15, full insert sequence Length = 1522 Score = 113 bits (57), Expect = 6e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcaccaagctca 67 |||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 1054 tgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgcacctcgctcg 1113 Query: 68 gcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 112 |||||||||||||| ||||||| |||||| | ||||||||||| Sbjct: 1114 ccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1158
>dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H12, full insert sequence Length = 1586 Score = 113 bits (57), Expect = 6e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcaccaagctca 67 |||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct: 1118 tgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgcacctcgctcg 1177 Query: 68 gcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 112 |||||||||||||| ||||||| |||||| | ||||||||||| Sbjct: 1178 ccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1222
>gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA, complete cds Length = 1473 Score = 89.7 bits (45), Expect = 9e-15 Identities = 90/105 (85%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcaccaagctca 67 |||| ||||||||||||||||||||||||||||||||| || |||| |||||| |||| Sbjct: 1024 tgcggatgatgcgggaggagttcgagctcaccatggcgttcagcggatgcacctcgctcg 1083 Query: 68 gcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 112 |||||||||||||| ||||||| ||| || | ||| ||||||| Sbjct: 1084 ccgacatcacccgcgcccacatctacacggacgccgaacgcctcg 1128
>gb|AY108197.1| Zea mays PCO065133 mRNA sequence Length = 1667 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcaccaagctca 67 |||||||| ||||||| |||||||||||||||||||||||| |||| |||||| ||| Sbjct: 1197 tgcgcatgctgcgggacgagttcgagctcaccatggcgctcagcggctgcacctccctcg 1256 Query: 68 gcgacatcacccgcgaacacatcttcaccgag 99 ||| ||||||||| | |||||| |||||||| Sbjct: 1257 ccgaaatcacccgcaagcacatcatcaccgag 1288
>ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1439 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 25 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 84 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1066 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1125 Query: 85 cacatcttcaccgagggcgac 105 ||| || ||||||||| |||| Sbjct: 1126 cacgtcatcaccgaggccgac 1146
>ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group), B1364A02.11-1 mRNA Length = 1501 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 25 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 84 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1107 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1166 Query: 85 cacatcttcaccgagggcgac 105 ||| || ||||||||| |||| Sbjct: 1167 cacgtcatcaccgaggccgac 1187
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 25 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 84 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 2833101 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 2833160 Query: 85 cacatcttcaccgagggcgac 105 ||| || ||||||||| |||| Sbjct: 2833161 cacgtcatcaccgaggccgac 2833181
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1364A02 Length = 137933 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 25 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 84 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 136662 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 136721 Query: 85 cacatcttcaccgagggcgac 105 ||| || ||||||||| |||| Sbjct: 136722 cacgtcatcaccgaggccgac 136742
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 25 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 84 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 3388 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 3447 Query: 85 cacatcttcaccgagggcgac 105 ||| || ||||||||| |||| Sbjct: 3448 cacgtcatcaccgaggccgac 3468
>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full insert sequence Length = 1738 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 25 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 84 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1365 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1424 Query: 85 cacatcttcaccgagggcgac 105 ||| || ||||||||| |||| Sbjct: 1425 cacgtcatcaccgaggccgac 1445
>dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E11, full insert sequence Length = 1439 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 25 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 84 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1066 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1125 Query: 85 cacatcttcaccgagggcgac 105 ||| || ||||||||| |||| Sbjct: 1126 cacgtcatcaccgaggccgac 1146
>dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E08, full insert sequence Length = 1501 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 25 gagttcgagctcaccatggcgctcggcgggtgcaccaagctcagcgacatcacccgcgaa 84 |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||| | Sbjct: 1107 gagttcgagctcaccatggcgctcagcggctgcacctccctcgccgacatcacccgcaac 1166 Query: 85 cacatcttcaccgagggcgac 105 ||| || ||||||||| |||| Sbjct: 1167 cacgtcatcaccgaggccgac 1187
>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds Length = 1486 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 22 gaggagttcgagctcaccatggc 44 ||||||||||||||||||||||| Sbjct: 1093 gaggagttcgagctcaccatggc 1115
>gb|AC026116.26| Homo sapiens 12 BAC RP11-1022B3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177267 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 479 tttggatactggtattatctgg 500 |||||||||||||||||||||| Sbjct: 22883 tttggatactggtattatctgg 22904
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 101 gcgaccgcctcggacgcccgct 122 |||||||||||||||||||||| Sbjct: 277800 gcgaccgcctcggacgcccgct 277779 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ctcggacgcccgctgccgag 128 |||||||||||||||||||| Sbjct: 5814697 ctcggacgcccgctgccgag 5814716
>ref|XM_473942.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 31 gagctcaccatggcgctcggcgggtgcac 59 |||||||||||||||||| |||| ||||| Sbjct: 1006 gagctcaccatggcgctcagcggatgcac 1034
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence Length = 187601 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 31 gagctcaccatggcgctcggcgggtgcac 59 |||||||||||||||||| |||| ||||| Sbjct: 59332 gagctcaccatggcgctcagcggatgcac 59360
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 31 gagctcaccatggcgctcggcgggtgcac 59 |||||||||||||||||| |||| ||||| Sbjct: 31726062 gagctcaccatggcgctcagcggatgcac 31726090
>dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O03, full insert sequence Length = 1435 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 31 gagctcaccatggcgctcggcgggtgcac 59 |||||||||||||||||| |||| ||||| Sbjct: 1075 gagctcaccatggcgctcagcggatgcac 1103
>dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F07, full insert sequence Length = 1427 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 31 gagctcaccatggcgctcggcgggtgcac 59 |||||||||||||||||| |||| ||||| Sbjct: 1079 gagctcaccatggcgctcagcggatgcac 1107
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0002A19, complete sequence Length = 139052 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 tctcgccatttccaccatatttcgcacc 383 |||| |||||||||||| |||||||||| Sbjct: 29956 tctctccatttccaccaaatttcgcacc 29983
>gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH) gene, complete cds Length = 3005 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 63 gctcagcgacatcacccgcgaacacatc 90 ||||||||||| ||||||||| |||||| Sbjct: 1024 gctcagcgacaccacccgcgagcacatc 1051
>gb|AC091262.8| Mus musculus chromosome 9, clone RP23-38G1, complete sequence Length = 157984 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 actgcaaggtgggcgtcttg 552 |||||||||||||||||||| Sbjct: 46578 actgcaaggtgggcgtcttg 46559
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 tctcgccatttccaccatatttcgcacc 383 |||| |||||||||||| |||||||||| Sbjct: 158415 tctctccatttccaccaaatttcgcacc 158442
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 63 gctcagcgacatcacccgcgaacacatc 90 ||||||||||| ||||||||| |||||| Sbjct: 766298 gctcagcgacaccacccgcgagcacatc 766325
>emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clone B13M15 Length = 63598 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cgcaacgcaacgcaacgcac 233 |||||||||||||||||||| Sbjct: 42560 cgcaacgcaacgcaacgcac 42541
>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete sequence Length = 186135 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 accatattgtatttccatgt 409 |||||||||||||||||||| Sbjct: 166688 accatattgtatttccatgt 166707
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 gctcagcgacatcacccgcgaacacatc 90 ||||||||||| ||||||||| |||||| Sbjct: 4277355 gctcagcgacaccacccgcgagcacatc 4277328
>gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174645 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cgcaacgcaacgcaacgcac 233 |||||||||||||||||||| Sbjct: 26540 cgcaacgcaacgcaacgcac 26559
>gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306, section 68 of 469 of the complete genome Length = 11141 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 63 gctcagcgacatcacccgcgaacacatc 90 ||||||||||| ||||||||| |||||| Sbjct: 3617 gctcagcgacaccacccgcgagcacatc 3644
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 6 ggtgcgcatgatgcgggaggagttcgag 33 ||||||||||||||| |||| ||||||| Sbjct: 3011490 ggtgcgcatgatgcgcgaggcgttcgag 3011517
>gb|AC156035.5| Mus musculus BAC clone RP23-302M20 from chromosome 12, complete sequence Length = 187168 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 aagtgcaagctctactgcaa 539 |||||||||||||||||||| Sbjct: 172505 aagtgcaagctctactgcaa 172486
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 attctgtatttatcatacat 459 |||||||||||||||||||| Sbjct: 22849562 attctgtatttatcatacat 22849581
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 tctcgccatttccaccatatttcgcacc 383 |||| |||||||||||| |||||||||| Sbjct: 17868764 tctctccatttccaccaaatttcgcacc 17868791
>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone BACR48M01, complete sequence Length = 188272 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cgcaacgcaacgcaacgcac 233 |||||||||||||||||||| Sbjct: 77484 cgcaacgcaacgcaacgcac 77465
>dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E12, full insert sequence Length = 2833 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cgcaacgcaacgcaacgcac 233 |||||||||||||||||||| Sbjct: 878 cgcaacgcaacgcaacgcac 859
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 tgcgcatgatgcgggaggagttcg 31 ||||||||||||||||||| |||| Sbjct: 2682552 tgcgcatgatgcgggaggatttcg 2682575
>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the complete sequence Length = 290640 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cgcaacgcaacgcaacgcac 233 |||||||||||||||||||| Sbjct: 5008 cgcaacgcaacgcaacgcac 5027
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cgcaacgcaacgcaacgcac 233 |||||||||||||||||||| Sbjct: 111024 cgcaacgcaacgcaacgcac 111005
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 gctcagcgacatcacccgcgaacacatc 90 ||||||||||| ||||||||| |||||| Sbjct: 4284145 gctcagcgacaccacccgcgagcacatc 4284118
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 356 tctcgccatttccaccatatttcgcacc 383 |||| |||||||||||| |||||||||| Sbjct: 17963081 tctctccatttccaccaaatttcgcacc 17963108
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 attctgtatttatcatacat 459 |||||||||||||||||||| Sbjct: 22777753 attctgtatttatcatacat 22777772
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 attctgtatttatcatacat 459 |||||||||||||||||||| Sbjct: 107282 attctgtatttatcatacat 107263 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,189,516 Number of Sequences: 3902068 Number of extensions: 3189516 Number of successful extensions: 53306 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52722 Number of HSP's gapped (non-prelim): 570 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
