ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2j17 |
|---|---|
| Clone Library Name | barley_pub |
>Y1660_MYCLE (O69468) Hypothetical protein ML1660| Length = 217 Score = 34.7 bits (78), Expect = 0.11 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 307 IDISKNLRDIIHLEITLDVFCSSTCKGLCLVCGANL 414 ID+ +++ D + +E+ C S C GLC CG +L Sbjct: 143 IDLEQSIIDAVGIELPFAPMCRSDCPGLCAECGTSL 178
>SSXT_MOUSE (Q62280) SSXT protein (SYT protein) (Synovial sarcoma-associated| Ss18-alpha) Length = 418 Score = 32.0 bits (71), Expect = 0.74 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +3 Query: 279 PAFPGRGEGDRHLEEPSGHHPPGDNAGRFLQQHL-QGPMPRLRRKPQHEQLQLQHG 443 P++P +G DR E+ S H+ G N+ QQ QGP P+ PQ +Q Q G Sbjct: 303 PSYPEQGY-DRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQG 357
>SSXT_HUMAN (Q15532) SSXT protein (Synovial sarcoma, translocated to X| chromosome) (SYT protein) Length = 418 Score = 32.0 bits (71), Expect = 0.74 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +3 Query: 279 PAFPGRGEGDRHLEEPSGHHPPGDNAGRFLQQHL-QGPMPRLRRKPQHEQLQLQHG 443 P++P +G DR E+ S H+ G N+ QQ QGP P+ PQ +Q Q G Sbjct: 303 PSYPEQGY-DRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQG 357
>Y2951_MYCBO (P65058) Hypothetical protein Mb2951c| Length = 207 Score = 31.6 bits (70), Expect = 0.97 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 298 EKEIDISKNLRDIIHLEITLDVFCSSTCKGLCLVCGANL 414 ++ ID+ + + D + LE+ C C GLC CG L Sbjct: 136 DETIDLEQPIIDAVGLELPFSPVCRPDCPGLCPQCGVPL 174
>Y2926_MYCTU (P65057) Hypothetical protein Rv2926c/MT2996| Length = 207 Score = 31.6 bits (70), Expect = 0.97 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 298 EKEIDISKNLRDIIHLEITLDVFCSSTCKGLCLVCGANL 414 ++ ID+ + + D + LE+ C C GLC CG L Sbjct: 136 DETIDLEQPIIDAVGLELPFSPVCRPDCPGLCPQCGVPL 174
>FA11B_MOUSE (Q8R3R5) Protein FAM11B| Length = 350 Score = 30.8 bits (68), Expect = 1.7 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Frame = -1 Query: 273 IPVYIFIVLVLAASYRREFGSVFFVYGAEVDHVGFLHRVFCQQEREIREYGFGSWLSTPV 94 IP+++ ++ ++A ++RR+ G+ ++ +G D FL VF +REYG +S + Sbjct: 248 IPLWLSLLTLMATTFRRKGGNHWW-FGIRRDFCQFLLEVF----PFLREYGN---ISYDL 299 Query: 93 AAEGDDGAQDA-VEPEPAAAP 34 E + A+DA V P AP Sbjct: 300 HHEDSEDAEDASVSEAPKIAP 320
>ASF1_HELAN (P22357) Anther-specific protein SF18 precursor (Fragment)| Length = 161 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +3 Query: 270 G*PPAFPGRGEGDRHLEEPSGHHPPGD 350 G PPA PG+GEGD P+ P GD Sbjct: 82 GTPPAPPGKGEGDAPHPPPTPSPPGGD 108
>DLDH_MYCTU (P66004) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) Length = 464 Score = 29.3 bits (64), Expect = 4.8 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%) Frame = -1 Query: 303 LLPGREMQAVIPVYI----------FIVLVLAASYRREFGSVFFVYGAEVDHVGFLHRVF 154 L+PG + A + Y I++ A + EFG V YG +V V FL R Sbjct: 148 LVPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL 207 Query: 153 CQQ--------EREIREYGFGSWLSTPVAAEGDDGAQDAV 58 + E++ ++ G +T V + D G+Q V Sbjct: 208 PNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTV 247
>DLDH_MYCBO (P66005) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) Length = 464 Score = 29.3 bits (64), Expect = 4.8 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%) Frame = -1 Query: 303 LLPGREMQAVIPVYI----------FIVLVLAASYRREFGSVFFVYGAEVDHVGFLHRVF 154 L+PG + A + Y I++ A + EFG V YG +V V FL R Sbjct: 148 LVPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL 207 Query: 153 CQQ--------EREIREYGFGSWLSTPVAAEGDDGAQDAV 58 + E++ ++ G +T V + D G+Q V Sbjct: 208 PNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTV 247
>RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| (MHC class I regulatory element-binding protein H-2RIIBP) Length = 520 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = -1 Query: 111 WLSTPVAAEGDDGAQDAVEPEPAAAPGDVDGD 16 WL P AA G Q A+EPEP A D GD Sbjct: 42 WLD-PAAAAAAAGEQQALEPEPGEAGRDGMGD 72
>EMS_DROME (P18488) Homeotic protein empty spiracles| Length = 497 Score = 28.9 bits (63), Expect = 6.3 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 9/59 (15%) Frame = +3 Query: 297 GEGDRHLEEPSGHHPP--GDNAGRFLQQHLQGPMPRLRRKP-------QHEQLQLQHGG 446 G HL P H P +A + QQHLQ P P P QH +Q QH G Sbjct: 77 GSPPHHLMAPPAHGLPYPHPHAQQQQQQHLQAPHPHPHLSPAQQHVLHQHLLMQHQHPG 135
>Y1220_METJA (Q58617) Hypothetical adenine-specific methylase MJ1220 (EC| 2.1.1.72) Length = 578 Score = 28.5 bits (62), Expect = 8.2 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 133 NFSLLLTEDPVEEPDVVDLGTIYEE 207 N ++ L P+EE + VDLG +YEE Sbjct: 527 NLNVSLYISPIEEDEDVDLGEVYEE 551
>AL_DROME (Q06453) Homeobox protein aristaless| Length = 408 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%) Frame = +3 Query: 276 PPAFPGRGEGDRHLEEPSGHHPP---------GDNAGRFLQQHLQG 386 PP P G +H + P+ H PP G + QHL G Sbjct: 279 PPTSPASGHASQHQQHPTAHPPPPQAPPQMPVGVQPAQLSPQHLVG 324
>M3K1_HUMAN (Q13233) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) (Fragment) Length = 1495 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 114 SWLSTPVAAEGDDGAQDAVEPEPAAAP 34 S S+P AAE + A EP PAAAP Sbjct: 114 SGASSPAAAEPGEKRAPAAEPSPAAAP 140
>RAD50_METMA (Q8PUY4) DNA double-strand break repair rad50 ATPase| Length = 1070 Score = 28.5 bits (62), Expect = 8.2 Identities = 21/57 (36%), Positives = 29/57 (50%) Frame = +1 Query: 277 RLHFPAGEKEIDISKNLRDIIHLEITLDVFCSSTCKGLCLVCGANLNTSSCSCSTEE 447 RLH EKE++++ LR+I E TL +G C CG L S +C+ EE Sbjct: 524 RLH--GKEKELEVT--LREI---ENTLRKNRELLAEGKCPTCGQELKGSGIACTAEE 573 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,271,370 Number of Sequences: 219361 Number of extensions: 1006448 Number of successful extensions: 3549 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3544 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
