>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 47/184 (25%), Positives = 86/184 (46%)
 Frame = +2

Query: 5   TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALM 184
           TY + I + C+ GR + A   F +MID G     + Y ++I       +   A  L+  M
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467

Query: 185 KQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGEL 364
             +G   N   +NS++D   K G   ++EK+++ M+R  V+P+ ++Y  ++  +  +G++
Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527

Query: 365 DRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIV 544
           D  M         G   +      ++  +CK SR  D + L ++M+      D   Y I+
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587

Query: 545 LNSL 556
           L  L
Sbjct: 588 LQGL 591



 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 45/187 (24%), Positives = 95/187 (50%)
 Frame = +2

Query: 8    YASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALMK 187
            + S I+ +C+ GR   +E +F  M+  G    V+ Y  +I+ Y    +  +A +LL+ M 
Sbjct: 479  FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538

Query: 188  QKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGELD 367
              G +PN   Y++L++   K+     A  ++KEM    V PD ++Y  I+    ++    
Sbjct: 539  SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598

Query: 368  RCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIVL 547
               + Y    E+G  ++ +   +++   CK    +D +Q+ +++ + D +L+ R + I++
Sbjct: 599  AAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMI 658

Query: 548  NSLREAG 568
            ++L + G
Sbjct: 659  DALLKVG 665



 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 8/196 (4%)
 Frame = +2

Query: 5   TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRL-LAL 181
           TY   I   CR GR D   A    +I +GF    +A+  ++      +R SDA  + L  
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148

Query: 182 MKQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQ-------PDRVSYTAIVG 340
           M + GC PNV+ YN LL  +G   ++R  E +  E++            PD VSYT ++ 
Sbjct: 149 MTELGCIPNVFSYNILL--KGLCDENRSQEAL--ELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 341 AFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQDTQL 520
            F + G+ D+    Y E  + G   D      ++   CK    +  +++L  M       
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 521 DRRLYMIVLNSLREAG 568
           D   Y  +L+    +G
Sbjct: 265 DCMTYNSILHGYCSSG 280



 Score = 72.8 bits (177), Expect = 6e-13
 Identities = 41/183 (22%), Positives = 89/183 (48%)
 Frame = +2

Query: 5   TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALM 184
           TY+  ++  C+ GR   A  +F  M  RG    +  YG ++  Y       +   LL LM
Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362

Query: 185 KQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGEL 364
            + G  P+ +V++ L+    K G   QA  ++ +M ++ + P+ V+Y A++G   +SG +
Sbjct: 363 VRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 422

Query: 365 DRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIV 544
           +  M Y+++  + G +    +   ++   C  +++    +L+ +M  +   L+   +  +
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482

Query: 545 LNS 553
           ++S
Sbjct: 483 IDS 485



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 38/165 (23%), Positives = 76/165 (46%)
 Frame = +2

Query: 5   TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALM 184
           TY S ++ YC  G+   A     +M   G +  VV Y  ++    +  R  +A ++   M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 185 KQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGEL 364
            ++G +P +  Y +LL      G   +   +   M+R  + PD   ++ ++ A+ + G++
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKV 387

Query: 365 DRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDM 499
           D+ M  + + R+ G   +    G ++G+ CK+ R  D +     M
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 38/125 (30%), Positives = 66/125 (52%)
 Frame = +2

Query: 5   TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALM 184
           +Y + IN + + G SD+A + + EM+DRG    VV Y ++I+   + +    A  +L  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 185 KQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGEL 364
            + G  P+   YNS+L      G  ++A    K+M    V+PD V+Y+ ++    ++G  
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNG-- 315

Query: 365 DRCMD 379
            RCM+
Sbjct: 316 -RCME 319



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
 Frame = +2

Query: 5    TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALM 184
            TY++ IN YC++ R + A  +F EM   G    ++ Y  ++    Q RR + A  L   +
Sbjct: 548  TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 185  KQKGCEPNVWVYNSLLD--MRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSG 358
             + G +  +  YN +L    + KL D   A ++++ +    ++ +  ++  ++ A  + G
Sbjct: 608  TESGTQIELSTYNIILHGLCKNKLTD--DALQMFQNLCLMDLKLEARTFNIMIDALLKVG 665

Query: 359  ELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQDTQLDRRLYM 538
              D   D +  F   G   +     LM           +L QL   M+     +D  +  
Sbjct: 666  RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 725

Query: 539  IVLNSLREAG 568
             ++  L + G
Sbjct: 726  FIVRELLQRG 735



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/154 (17%), Positives = 60/154 (38%)
 Frame = +2

Query: 5   TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALM 184
           TY + +  Y   G       +   M+  G       +  +I  Y +  +   A  + + M
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397

Query: 185 KQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGEL 364
           +Q+G  PN   Y +++ +  K G    A   +++M+   + P  + Y +++       + 
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457

Query: 365 DRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSR 466
           +R  +   E  + G  ++      ++   CK  R
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 28/146 (19%), Positives = 52/146 (35%)
 Frame = +2

Query: 5    TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALM 184
            TY   ++  C+   +D A  +F  +           +  MI    ++ R  +A  L    
Sbjct: 618  TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677

Query: 185  KQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGEL 364
               G  PN W Y  + +     G   + ++++  M       D      IV    + GE+
Sbjct: 678  SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 737

Query: 365  DRCMDYYQEFRETGGTVDKTLAGLMV 442
             R   Y     E   +++ + A L +
Sbjct: 738  TRAGTYLSMIDEKHFSLEASTASLFI 763

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 40/169 (23%), Positives = 79/169 (46%)
 Frame = +2

Query: 5   TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALM 184
           TY + + +Y +  R  R   +F EM   G+     AY  ++S   +  R  +A   +  +
Sbjct: 225 TYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQEL 284

Query: 185 KQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGEL 364
            +KG   ++  YN+LL++  K G+    + +  E+ RR ++ D  ++T IV    R+G+ 
Sbjct: 285 VRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQT 344

Query: 365 DRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQD 511
            R  +++    E G  ++      +V   CK    +  ++    M+V+D
Sbjct: 345 RRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKD 393



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 1/180 (0%)
 Frame = +2

Query: 20  INVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALMKQKGC 199
           ++  C+  + ++AE++  + I  G D  VV Y  +IS Y +     +A  +   M+  G 
Sbjct: 20  VDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGI 79

Query: 200 EPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMD 379
            P+V  YNSL+    +         ++ EM+   + PD  SY  ++  + + G+ +    
Sbjct: 80  RPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFR 139

Query: 380 -YYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNSL 556
             Y++ +  G         +++   CK    ++ ++L ++M+ +  + +   Y I++N L
Sbjct: 140 VLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQSR-FKPELMTYNILINGL 198



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 35/217 (16%)
 Frame = +2

Query: 5   TYASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLAL- 181
           TY S I    R    D    +F EM++ G    + +Y  ++  Y ++ +  +A R+L   
Sbjct: 85  TYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKD 144

Query: 182 MKQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRR--------------------- 298
           ++  G  P    YN LLD   K G    A +++KEM  R                     
Sbjct: 145 LQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQSRFKPELMTYNILINGLCKSRRV 204

Query: 299 -------------KVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLM 439
                           P+ V+YT I+  + ++  + R +  + E +  G T D      +
Sbjct: 205 GTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAV 264

Query: 440 VGVFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLN 550
           V    KT R  +  + ++++  +  + D   Y  +LN
Sbjct: 265 VSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLN 301

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
 Frame = +2

Query: 5    TYASAINVYCRLGRSDRAEA---VFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLL 175
            T+A  IN   R G +D A     +F E         V  Y  ++S  G+ RR ++  +L 
Sbjct: 890  TFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLF 949

Query: 176  ALMKQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRR-KVQPDRVSYTAIV----- 337
              MK+ G  P    Y ++++   ++GD   AEK++ EM  +   QP    Y  ++     
Sbjct: 950  QEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQ 1009

Query: 338  GAFNRSGELDRCMDYYQEFRET 403
              FNR    ++ + YY     T
Sbjct: 1010 TMFNR----EKALFYYNRLCAT 1027



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
 Frame = +2

Query: 182  MKQKGCEPNVWVYNSLLD---MRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNR 352
            MK  G  P    +  L++    RG   D+  A  I++E  R  V+P    Y A++    R
Sbjct: 879  MKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGR 938

Query: 353  SGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQ 508
            +     C   +QE +E+G        G ++   C+    +   +L  +M+ Q
Sbjct: 939  ARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQ 990

>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 34/175 (19%), Positives = 71/175 (40%)
 Frame = +2

Query: 44  RSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALMKQKGCEPNVWVYN 223
           R++ A  ++  +   G    V  Y  ++ +Y Q       T  LA M++   +PN   Y 
Sbjct: 21  RTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQ 80

Query: 224 SLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRET 403
            L+     +GD   A KI   M  + +      ++A+V    R+G+++   +     R+ 
Sbjct: 81  RLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDA 140

Query: 404 GGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNSLREAG 568
           G          ++  + +    + + Q L  ++  +  L  R  + ++ S  +AG
Sbjct: 141 GIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAG 195

>SEC_ARATH (Q9M8Y0) Probable UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase SEC (EC 2.4.1.-)
           (Protein SECRET AGENT)
          Length = 977

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
 Frame = +2

Query: 8   YASAINVYCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALMK 187
           Y +  N +   G +DRA   +   I+        A+ N+ S Y +  R S+AT+      
Sbjct: 124 YGNMANAWKEKGDTDRAIRYYLIAIELR-PNFADAWSNLASAYMRKGRLSEATQC----- 177

Query: 188 QKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKE-----MMRRKVQPD-RVSYTAIVGAFN 349
              C+  + +   L+D    LG+  +A+ +  E     +   ++QP   ++++ + G F 
Sbjct: 178 ---CQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFM 234

Query: 350 RSGELDRCMDYYQE 391
            SG+L+R + YY+E
Sbjct: 235 ESGDLNRALQYYKE 248

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 22/111 (19%), Positives = 54/111 (48%)
 Frame = +2

Query: 170 LLALMKQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFN 349
           LLAL+ +   E ++  +N+L+  + KLGD   A+ +   + +R + P+  ++  +    +
Sbjct: 505 LLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCH 564

Query: 350 RSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMK 502
           R  +    +    + +++  T +  +   ++    +   +  LI +L+DMK
Sbjct: 565 RPKD---GLQLLTDMKKSQVTPNSHIYSALINAAVRKLNYTYLINILKDMK 612



 Score = 29.6 bits (65), Expect = 6.3
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = +2

Query: 287 MMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFR----ETGGTVDKTLAGLMVGVFC 454
           +   ++QP   +YTA++G   R G L +    Y + +    E        L  +      
Sbjct: 162 LKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPW 221

Query: 455 KTSRFNDLIQLLRDMKVQDTQLDRRLYMIVL 547
           K S     ++L + ++ ++ +L+ + Y  +L
Sbjct: 222 KDSALQSALKLRQQLQAKNFELNLKTYHALL 252

>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1|
          Length = 700

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 22/111 (19%), Positives = 54/111 (48%)
 Frame = +2

Query: 170 LLALMKQKGCEPNVWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFN 349
           LLAL+ +   E ++  +N+L+  + KLGD   A+ +   + +R + P+  ++  +    +
Sbjct: 507 LLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCH 566

Query: 350 RSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQLLRDMK 502
           R  +    +    + +++  T +  +   ++    +   +  LI +L+DMK
Sbjct: 567 RPKD---GLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMK 614

>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor|
          Length = 965

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 1/146 (0%)
 Frame = +2

Query: 29  YCRLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALMKQKGCEPN 208
           + RL   D  +  F+ +   G    +  YG ++    +I       +L   + ++G  P 
Sbjct: 321 HSRLHNWDALQQQFNALFGIGKLPSIQHYGILMYTMARIGELDSVNKLYTQLLRRGMIPT 380

Query: 209 VWVYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQ 388
             V  SLL    K+GD       ++   +  + P   ++T ++  +    +LD      +
Sbjct: 381 YAVLQSLLYAHYKVGDFAACFSHFELFKKYDITPSTATHTIMLKVYRGLNDLDGAFRILK 440

Query: 389 EFRETGGT-VDKTLAGLMVGVFCKTS 463
              E     + +    L++ + CKT+
Sbjct: 441 RLSEDPSVEITEGHFALLIQMCCKTT 466

>AEP3_CANGA (Q6FKT1) ATPase expression protein 3|
          Length = 623

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 98  KCVVAYGNMISMYGQIRRASDATRLLALMKQKGCEPNVWVYNSLLDMRGKLGDSRQAEKI 277
           + V  Y +++  Y +    +    L A MK +GC+PN   YN LL    K    R+   I
Sbjct: 216 RSVQCYNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSI 275

Query: 278 WKEMM 292
             E++
Sbjct: 276 KNELL 280

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/95 (25%), Positives = 44/95 (46%)
 Frame = +2

Query: 35  RLGRSDRAEAVFSEMIDRGFDKCVVAYGNMISMYGQIRRASDATRLLALMKQKGCEPNVW 214
           +LG  + A+A+   +  +G    +  + N+        R  D  +LLA MK+    PN+ 
Sbjct: 530 KLGDLEGAKALLPILAKKGIVPNLRTFCNLAI---GCHRPRDGMQLLADMKKSQVSPNIH 586

Query: 215 VYNSLLDMRGKLGDSRQAEKIWKEMMRRKVQPDRV 319
           +Y++L++   K  D      I K+M +  V  + V
Sbjct: 587 IYSTLINAALKKLDYTYLISILKDMRQNSVPVNEV 621

>GCP_STRCO (O86793) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)|
           (Glycoprotease)
          Length = 374

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 463 PVQRPHPAAQGHEGAGHPAGQEAVHDRSQQ 552
           PV  PH   QGH   GHP G + VH+ S++
Sbjct: 342 PVTEPHVPGQGHPH-GHPHGHDHVHEVSKE 370

>AEP3_KLULA (Q6CIF3) ATPase expression protein 3|
          Length = 593

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 98  KCVVAYGNMISMYGQIRRASDATRLLALMKQKGCEPNVWVYNSLLDMRGKLGDSR 262
           K    + ++I  YG     +    L A MK +G  PNV  YN +L  R  L +SR
Sbjct: 211 KTASVFNDVIYYYGNKNNFATCRELYAQMKSEGIAPNVQTYNLML--RNLLRNSR 263

>PTPR2_HUMAN (Q92932) Receptor-type tyrosine-protein phosphatase N2 precursor|
           (EC 3.1.3.48) (R-PTP-N2) (Islet cell autoantigen-related
           protein) (ICAAR) (IAR) (Phogrin)
          Length = 1015

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = -1

Query: 550 VENDHVQPPVQLGVLHLHVPEQLDEVVEPAGFAEHPHHEAGQG------LVHRPSRLPEL 389
           ++ D + P V  GV   H+   L      A  A+ P    G+G      L+  PSR+P  
Sbjct: 224 LQPDELSPKVDSGVDRHHLMAALS-----AYAAQRPPAPPGEGSLEPQYLLRAPSRMPRP 278

Query: 388 LVVVHAPVELPRPVERADD 332
           L+   AP + P P+  ++D
Sbjct: 279 LLAPAAPQKWPSPLGDSED 297

>FMT_IDILO (Q5QXI6) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 316

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 499 HVPEQLDEVVEPAGFAEHPHHEAGQGLVHRPSRLPELLVVVHAPVELPRPVERADD 332
           H+ + LDE  +  G    P   AG+G   +PS + +L +    PV  P  ++  +D
Sbjct: 15  HLQQLLDESHQVVGVYTQPDRPAGRGKKPQPSAVKKLALEHQLPVYQPESLKSEED 70

>DNL4_ARATH (Q9LL84) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
           (Polydeoxyribonucleotide synthase [ATP] 4)
          Length = 1219

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -1

Query: 490 EQLDEVVEPA-GFAEHPHHEAGQGLVHRPSRLPELLVVVHAPVELPR----PVERADDGR 326
           E L +VV+P  G  E    E G   VHRPS  P   +VVHA  ++ R     VE  D+G 
Sbjct: 362 ELLKKVVKPLKGRLEVLVPEGGLN-VHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI 420

Query: 325 V 323
           V
Sbjct: 421 V 421

>GLGA_CHLCV (Q821W4) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 475

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 395 RETGGTVDKTLAGLMVGVFCKTSRFNDLIQLL 490
           R TGG  D  + G+    F +T  FND + +L
Sbjct: 401 RSTGGLADTVVTGINGFTFSQTDNFNDFLHML 432

>CHEZ_PSEAE (Q51434) Chemotaxis protein cheZ|
          Length = 227

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
 Frame = +2

Query: 140 QIRRASDATRLLALMKQKGCEPNVWVYNSLLDMRGKLGD-SRQAEKIWKEMMRRKVQPDR 316
           QI  A+D    +  M +K     + +      +  +LGD SR+  + W+  MRR++  D 
Sbjct: 47  QIADATDRLSYVVEMTEKAANRTMDLVEQSAPLVNQLGDDSRELHQEWQRFMRREIDADG 106

Query: 317 VSYTA------IVGAFNRSGELDRCMD---YYQEFRETGGTVDKTLAGLMVGV 448
               A      +V +   +G+L   ++     Q++++  G V K +  L+  V
Sbjct: 107 FRELAKRIEQFLVRSGENAGQLSSQLNDILLAQDYQDLTGQVIKRVTKLVTEV 159

>CD014_MOUSE (Q9JJG9) Protein C4orf14 homolog|
          Length = 693

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 487 AQGHEGAGHPAGQEAVHDRSQQPPRSRA 570
           A GH+G  +PAG E + +   Q P SR+
Sbjct: 281 APGHQGPQYPAGDEPLEEIKNQNPSSRS 308


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,986,635
Number of Sequences: 219361
Number of extensions: 1233877
Number of successful extensions: 4925
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4903
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)