>CLPC_PEA (P35100) ATP-dependent Clp protease ATP-binding subunit clpC|
           homolog, chloroplast precursor
          Length = 922

 Score =  117 bits (292), Expect = 2e-26
 Identities = 66/133 (49%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
 Frame = +2

Query: 59  MAGTLVLPVALETTFAGRTGGRHWKSHGTRRTPSMLAMSLNRPVRMAAFVGLRSVHSFSA 238
           MA  L   +++    AG    +H  S  ++R+   +       +RM+ F GLR+ +  + 
Sbjct: 1   MARVLAQSLSVPGLVAGHKDSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNT 60

Query: 239 MRSS--NFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 412
           M     +F S V+    SRR R   F+ RAMFERFTEKAIKVIMLAQEEARRLGHNFVGT
Sbjct: 61  MMRPGLDFHSKVSKAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 120

Query: 413 EQVLLGLVGEGTG 451
           EQ+LLGL+GEGTG
Sbjct: 121 EQILLGLIGEGTG 133



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 28/53 (52%), Positives = 40/53 (75%)
 Frame = +2

Query: 293 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           GR + FV  A+   FT +A +V+ L+QEEAR+LGHN++G+E +LLGL+ EG G
Sbjct: 158 GRGSGFV--AVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEG 208

>CLPAB_LYCES (P31542) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog CD4B, chloroplast precursor
          Length = 923

 Score =  115 bits (289), Expect = 4e-26
 Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
 Frame = +2

Query: 59  MAGTLVLPVALETTFAGRTGGRHWKSHGTRRTPSMLAMSLNRPVRMAAFVGLRSVHSFSA 238
           MA  LV   ++ ++ AG    +   S  T+R  +ML  + +  + +  F GLR  ++   
Sbjct: 1   MARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDT 60

Query: 239 MRSSN--FRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 412
           +  S    +S VA+  + RR R   FV +AMFERFTEKAIKVIMLAQEEARRLGHNFVGT
Sbjct: 61  LVRSGETLQSKVAAATYVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 120

Query: 413 EQVLLGLVGEGTG 451
           EQ+LLGL+GEGTG
Sbjct: 121 EQILLGLIGEGTG 133



 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 27/53 (50%), Positives = 39/53 (73%)
 Frame = +2

Query: 293 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           GR + FV  A+   FT +A +V+ L+ EEAR+LGHN++G+E +LLGL+ EG G
Sbjct: 158 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEG 208

>CLPAA_LYCES (P31541) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog CD4A, chloroplast precursor
          Length = 926

 Score =  113 bits (282), Expect = 3e-25
 Identities = 68/134 (50%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
 Frame = +2

Query: 59  MAGTLVLPVALETTFAGRTGGRHWKSHGTRRTPSMLAMSLNRPVRMAAFVGLRSVHSFSA 238
           MA  LV    +  + AG   G+   S   +RT  ML        R+  F GLR  ++   
Sbjct: 2   MARALVQSTNILPSVAGERAGQFNGSRKDQRTVRMLCNVKCCSSRLNNFAGLRGCNALDT 61

Query: 239 M---RSSNFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVG 409
           +         S VA+  F RR R   FV +AMFERFTEKAIKVIMLAQEEARRLGHNFVG
Sbjct: 62  LLVKSGETLHSKVAAATFVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVG 121

Query: 410 TEQVLLGLVGEGTG 451
           TEQ+LLGL+GEGTG
Sbjct: 122 TEQILLGLIGEGTG 135



 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/53 (49%), Positives = 39/53 (73%)
 Frame = +2

Query: 293 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           GR + F+  A+   FT +A +V+ L+ EEAR+LGHN++G+E +LLGL+ EG G
Sbjct: 160 GRGSGFI--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEG 210

>CLPA_BRANA (P46523) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog, chloroplast precursor (Fragment)
          Length = 874

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 44/54 (81%), Positives = 50/54 (92%)
 Frame = +2

Query: 290 RGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           +G+ +  V +AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQ+LLGL+GEGTG
Sbjct: 30  KGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTG 83



 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 27/53 (50%), Positives = 39/53 (73%)
 Frame = +2

Query: 293 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           GR + FV  A+   FT +A +V+ L+ EEAR+LGHN++G+E +LLGL+ EG G
Sbjct: 108 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEG 158

>CLPC_PORPU (P51332) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 821

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 42/43 (97%), Positives = 43/43 (100%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQ+LLGLVGEGTG
Sbjct: 1   MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTG 43



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 28/53 (52%), Positives = 39/53 (73%)
 Frame = +2

Query: 293 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           GR + FV  A+   FT +A +V+ L+ EEAR+LGHN++GTE +L+GLV EG G
Sbjct: 68  GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEG 118

>CLPC_GUITH (O78410) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 819

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 41/43 (95%), Positives = 43/43 (100%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQ+LLGL+GEGTG
Sbjct: 1   MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTG 43



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 28/53 (52%), Positives = 39/53 (73%)
 Frame = +2

Query: 293 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           GR + FV  A+   FT +A +V+ L+ EEAR+LGHN++GTE +LLGL+ EG G
Sbjct: 68  GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEG 118

>CLPC_CYACA (Q9TM05) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 854

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 39/43 (90%), Positives = 43/43 (100%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFERFTEKA+KVIMLAQEEARRLGHNFVGTEQ+LLG++GEGTG
Sbjct: 32  MFERFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTG 74



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = +2

Query: 293 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           GR + FV  A+   FT +A K++ LA EE+R L HN+VGTE +LLGL+ EG G
Sbjct: 99  GRGSGFV--AIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEG 149

>CLPC_ODOSI (P49574) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 885

 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 33/43 (76%), Positives = 40/43 (93%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFE+FTE AIKVIML+QEEARR+GHNFVGTEQ+LLG++G+  G
Sbjct: 1   MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHG 43



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 23/53 (43%), Positives = 31/53 (58%)
 Frame = +2

Query: 293 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           GR   FV   +   FT +A +V+ +A  E + LG NFVGTE +LL L+ E  G
Sbjct: 68  GRGTGFVASEI--PFTPRAKRVLEMAVHEGKDLGQNFVGTEHILLALISESDG 118

>CLPC_MYCTU (P0A522) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 28/43 (65%), Positives = 37/43 (86%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFERFT++A +V++LAQEEAR L HN++GTE +LLGL+ EG G
Sbjct: 1   MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEG 43



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           FT +A KV+ L+  EA +LGHN++GTE +LLGL+ EG G
Sbjct: 80  FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEG 118

>CLPC_MYCLE (P24428) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 28/43 (65%), Positives = 37/43 (86%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFERFT++A +V++LAQEEAR L HN++GTE +LLGL+ EG G
Sbjct: 1   MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEG 43



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           FT +A KV+ L+  EA +LGHN++GTE +LLGL+ EG G
Sbjct: 80  FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEG 118

>CLPC_MYCBO (P0A523) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 28/43 (65%), Positives = 37/43 (86%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFERFT++A +V++LAQEEAR L HN++GTE +LLGL+ EG G
Sbjct: 1   MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEG 43



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           FT +A KV+ L+  EA +LGHN++GTE +LLGL+ EG G
Sbjct: 80  FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEG 118

>CLPC_BACSU (P37571) Negative regulator of genetic competence clpC/mecB|
          Length = 810

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MF RFTE+A KV+ LAQEEA RLGHN +GTE +LLGLV EG G
Sbjct: 2   MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEG 44



 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 23/39 (58%), Positives = 32/39 (82%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           +T +A KVI L+ +EAR+LGH++VGTE +LLGL+ EG G
Sbjct: 80  YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEG 118

>CLPB_OCEIH (Q8EU05) Chaperone clpB|
          Length = 809

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 30/43 (69%), Positives = 35/43 (81%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MF RFTE+A KV+ L+QEEA RLGHN +GTE +LLGLV EG G
Sbjct: 2   MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEG 44



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 23/39 (58%), Positives = 33/39 (84%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           +T +A KV+ L+Q+EAR+LGH++VGTE +LLGL+ EG G
Sbjct: 80  YTPRAKKVVELSQDEARKLGHSYVGTEHILLGLIREGEG 118

>ERD1_ARATH (P42762) ERD1 protein, chloroplast precursor|
          Length = 945

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 32/76 (42%), Positives = 48/76 (63%)
 Frame = +2

Query: 215 RSVHSFSAMRSSNFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLG 394
           R++H FS    +N R      RF +R R+      A+FERFTE+AI+ I+ +Q+EA+ LG
Sbjct: 50  RTIHRFSTT-PTNLR------RFPQRKRKKFTPISAVFERFTERAIRAIIFSQKEAKSLG 102

Query: 395 HNFVGTEQVLLGLVGE 442
            + V T+ +LLGL+ E
Sbjct: 103 KDMVYTQHLLLGLIAE 118

>CLPC_CHLPN (Q9Z8A6) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 845

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFE+FT +A +VI LA++EA+RL HN++GTE +LLGL+  G G
Sbjct: 1   MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQG 43



 Score = 32.7 bits (73), Expect = 0.44
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 338 TEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLV 436
           T +  K    A EEA  L HN+VGTE +LLG++
Sbjct: 82  TGRVKKSFESANEEASLLEHNYVGTEHLLLGIL 114

>CLPC_CHLTR (O84288) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 854

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFE+FT +A +VI LA++EA+RL HN++GTE +LLGL+  G G
Sbjct: 1   MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQG 43



 Score = 35.4 bits (80), Expect = 0.067
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 338 TEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           T +  K    A EEA  L HN+VGTE +LLG++ +  G
Sbjct: 82  TGRVKKSFESANEEAALLEHNYVGTEHLLLGILNQSDG 119

>CLPC_CHLMU (Q9PKA8) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 870

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +2

Query: 323 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           MFE+FT +A +VI LA++EA+RL HN++GTE +LLGL+  G G
Sbjct: 17  MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQG 59



 Score = 35.0 bits (79), Expect = 0.088
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 338 TEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           T +  K    A EEA  L HN+VGTE +LLG++ +  G
Sbjct: 98  TGRVKKSFESANEEASILEHNYVGTEHLLLGILNQADG 135

>HLYB_TREHY (Q54316) Hemolysin B|
          Length = 828

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +2

Query: 353 KVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           K+I  + EEAR L HN++GTE +LLGL+ E +G
Sbjct: 89  KLISRSAEEARALSHNYIGTEHLLLGLLREESG 121



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +2

Query: 323 MFE-RFTEKAIKVIML-AQEEARRLGHNFVGTEQVLLGLVGE 442
           MF+   T KA KVI L AQEEA+RL H+ V  E +LLGL+ E
Sbjct: 1   MFQFHLTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLYE 42

>Y2686_MYCBO (P0A525) Hypothetical protein Mb2686|
          Length = 252

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLV 436
           F+  A KV+ L   EA RLGHN++GTE +LL L+
Sbjct: 172 FSGPARKVLELTFREALRLGHNYIGTEHLLLALL 205



 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 242 RSSNFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQV 421
           +S       A  RF  R    +  +   F RFT +A   ++ AQ  A     + +  + +
Sbjct: 68  KSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHL 127

Query: 422 LLGLV 436
           LLG++
Sbjct: 128 LLGVL 132

>Y2667_MYCTU (P0A524) Hypothetical protein Rv2667/MT2741|
          Length = 252

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLV 436
           F+  A KV+ L   EA RLGHN++GTE +LL L+
Sbjct: 172 FSGPARKVLELTFREALRLGHNYIGTEHLLLALL 205



 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 242 RSSNFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQV 421
           +S       A  RF  R    +  +   F RFT +A   ++ AQ  A     + +  + +
Sbjct: 68  KSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHL 127

Query: 422 LLGLV 436
           LLG++
Sbjct: 128 LLGVL 132

>CLPB_LEPIN (Q8F509) Chaperone clpB|
          Length = 860

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           F+  A+ ++  A E  + L   ++ T+ +LLGL+  GTG
Sbjct: 84  FSRSAVSLLKAADEVRKELKDEYLSTDHILLGLMKNGTG 122

>CLPB_LEPIC (Q72QU2) Chaperone clpB|
          Length = 860

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 335 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           F+  A+ ++  A E  + L   ++ T+ +LLGL+  GTG
Sbjct: 84  FSRSAVSLLKAADEVRKELKDEYLSTDHILLGLMKNGTG 122

>TAOK3_XENLA (Q6DD27) Serine/threonine-protein kinase TAO3 (EC 2.7.11.1)|
           (Thousand and one amino acid protein 3)
          Length = 896

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 167 PTLRESSWFHETSS-VDRLYGLQKLSQEQPAGLRSLPWSKVSRPKPA 30
           PTL+ + W       VD  Y LQKL QE+PA L  L    V R +PA
Sbjct: 239 PTLQSNEWTDSFKGFVD--YCLQKLPQERPASLELLRHDFVWRERPA 283

>Y394_PSEAE (P24562) Hypothetical UPF0001 protein PA0394|
          Length = 230

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 173 TLPTLRESSWFHETSSVDRLYGLQKLSQEQPAGLRSL 63
           T P      W H   SVDRL   Q+LS+++PAGL  L
Sbjct: 87  TRPIAEHFQWVH---SVDRLKIAQRLSEQRPAGLPPL 120

>CLPB_PROMM (Q7V8B1) Chaperone clpB|
          Length = 865

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 329 ERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLV 436
           ++FTEK    I+LAQ+ A++  H  + TE +LL L+
Sbjct: 6   DQFTEKGWAAIVLAQQLAQQRKHQQLETEHLLLSLL 41

>UN84A_HUMAN (O94901) Sad1/unc-84 protein-like 1 (Unc-84 homolog A)|
          Length = 812

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 194 SLQDGLMTLPTLRESSWFHETSSVDRLYGL 105
           SLQD +   P + + SW  E ++VD  +GL
Sbjct: 123 SLQDAVTRRPPVLDESWIREQTTVDHFWGL 152

>CLPB2_STRAW (Q826F2) Chaperone clpB 2|
          Length = 879

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 332 RFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           R T+K+ + +  AQ  A R+GH  V  E +LL L+ +  G
Sbjct: 5   RLTQKSQEALQEAQTAAGRMGHTEVDGEHLLLALLDQEDG 44

>FEN1A_ORYSA (Q9SXQ6) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a)|
          Length = 380

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
 Frame = +2

Query: 107 GRTGGRHWKSHGTRRTPSMLAMSLNRPVRMAAFVGLRSVHSFSAMRSSNFRSTVASYRFS 286
           GRTG     +     T  +  M  NR +R+    G++ V+ F   +  + +    + R+S
Sbjct: 47  GRTGMETLTNEAGEVTSHLQGM-FNRTIRLLE-AGIKPVYVFDG-KPPDLKKQELAKRYS 103

Query: 287 RRGRRASFVTRAM-------FERFTEKAIKVIMLAQEEARRL 391
           +R      +T A+        E+F+++ +KV     EE +RL
Sbjct: 104 KREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRL 145

>CLPB1_SYNY3 (P74459) Chaperone clpB 1|
          Length = 898

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 332 RFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 451
           +FTE+A   I+ +QE ARR  +  +  E +LL L+ +  G
Sbjct: 8   KFTEQAWDAIVKSQEVARRYKNTNLEVEHILLALLEQDMG 47

>NCAP_IAWIL (P15682) Nucleoprotein|
          Length = 498

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +2

Query: 86  ALETTFAGRTGGRHWKSHGTRRTPSMLA---MSLNRPVRMAAFVGLRSVHSFSAMRSSNF 256
           A+ T   G T  +   S      P+      +  +RP  MAAF G       +  R+S+ 
Sbjct: 387 AIRTRSGGNTNQQRASSGQISIQPTFSVQRNLPFDRPTIMAAFTGN------TEGRTSDM 440

Query: 257 RSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIM 364
           R+ +     S R    SF  R +FE   EKA   I+
Sbjct: 441 RTEIIRLMESARPEDVSFQGRGVFELSDEKAASPIV 476

>BACH2_HUMAN (Q9BYV9) Transcription regulator protein BACH2 (BTB and CNC homolog|
           2)
          Length = 841

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
 Frame = -1

Query: 447 VPSPTRPNRTCSVPTKL*PR--------RLASSCAS 364
           +P   RPN +C VP K+ PR        R +SSC+S
Sbjct: 490 LPGRMRPNTSCPVPIKVCPRSPPLETRTRTSSSCSS 525

>YHN8_YEAST (P38799) Hypothetical 63.3 kDa protein in NMD2-IRE1 intergenic|
           region
          Length = 552

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 248 TSA*LRSYVPISDRQMLPSLQDGLMTLPTLRESSWFHE 135
           T+  +RS++P    Q L  L  G  T+P +   SWF E
Sbjct: 487 TTLMVRSHLPFEVSQRLKELLGGKFTVPNIVIDSWFDE 524

>TEPA_BACHD (Q9KA93) Translocation-enhancing protein tepA|
          Length = 256

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 296 RRASFVTRAMFERFTEKAIKVIMLAQEEARR-LGHNFVGTEQVLLGLVGEGTG 451
           R  SFVT+      +E+  K +M ++    R +G N +GT+ V  GL+ E  G
Sbjct: 180 RVVSFVTK--HSHISEEKFKELMFSKGNLTRDIGTNVIGTDAVTYGLIDEVGG 230

>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 284 SRRGRRASFVTRAMFERFTEKAIKVIMLAQE 376
           S RGR  S  T A+FERF+    + + LA+E
Sbjct: 238 SARGRLRSSETEALFERFSRLGDRFLRLAEE 268

>M3K13_PONPY (Q5R8X7) Mitogen-activated protein kinase kinase kinase 13 (EC|
           2.7.11.25)
          Length = 966

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -1

Query: 408 PTKL*PRRLASSCASIMTFIAFSVNLSNIALVTKEARLPRLENL*DATVDLKLDERIAEK 229
           P +  P R  SSC S  TF + + ++S+     +E       N  D   D KL++R+AEK
Sbjct: 830 PRRQRPHRCISSCQSYSTFSSENFSVSD----GEEGNTSDHSNSPDELAD-KLEDRLAEK 884

Query: 228 L 226
           L
Sbjct: 885 L 885

>M3K13_HUMAN (O43283) Mitogen-activated protein kinase kinase kinase 13 (EC|
           2.7.11.25) (Mixed lineage kinase) (MLK) (Leucine
           zipper-bearing kinase)
          Length = 966

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -1

Query: 408 PTKL*PRRLASSCASIMTFIAFSVNLSNIALVTKEARLPRLENL*DATVDLKLDERIAEK 229
           P +  P R  SSC S  TF + + ++S+     +E       N  D   D KL++R+AEK
Sbjct: 830 PRRQRPHRCISSCQSYSTFSSENFSVSD----GEEGNTSDHSNSPDELAD-KLEDRLAEK 884

Query: 228 L 226
           L
Sbjct: 885 L 885


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,179,578
Number of Sequences: 219361
Number of extensions: 1263326
Number of successful extensions: 3989
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 3871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3986
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)