ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2h04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472910.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1653 Score = 190 bits (96), Expect = 3e-45 Identities = 258/312 (82%) Strand = Plus / Plus Query: 15 tgggtccgtgcgatgaatcgaacgcttggaactacacctccacgtatgagcttgtgctga 74 ||||||| || |||||||| ||||||||||||||||| || || | ||| | || ||| Sbjct: 1265 tgggtccatgtgatgaatcaaacgcttggaactacacatcaacacacgagttggtactgc 1324 Query: 75 aacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggactg 134 |||| ||||| |||||||| ||| ||||||||| ||||| | |||| |||| ||||| | Sbjct: 1325 aacacactggtcaatgcctccaggtcaagtctgtcggtgagaatgcacagcttgggaccg 1384 Query: 135 gctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcgg 194 |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 1385 attgcagcaaatccagttcaaagtggcagctaatatcaaattcaggaatgcatgtttcga 1444 Query: 195 ccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatca 254 | |||||||| || ||||| || ||||| ||| ||||||| ||||| ||| |||||| Sbjct: 1445 ctgaactcactaaaaatggaaccagagtatgcctggatgccactcctgatggtatcatca 1504 Query: 255 caacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggt 314 |||| ||| ||||||||||| |||| |||||||| ||| | |||||||||||||||| Sbjct: 1505 caacaaatccgtgcaagtgcctaaccggagatccaaattgcaatcctgagagccagtggt 1564 Query: 315 tcaaagttatat 326 ||||| |||||| Sbjct: 1565 tcaaaattatat 1576
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 190 bits (96), Expect = 3e-45 Identities = 258/312 (82%) Strand = Plus / Plus Query: 15 tgggtccgtgcgatgaatcgaacgcttggaactacacctccacgtatgagcttgtgctga 74 ||||||| || |||||||| ||||||||||||||||| || || | ||| | || ||| Sbjct: 35337 tgggtccatgtgatgaatcaaacgcttggaactacacatcaacacacgagttggtactgc 35396 Query: 75 aacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggactg 134 |||| ||||| |||||||| ||| ||||||||| ||||| | |||| |||| ||||| | Sbjct: 35397 aacacactggtcaatgcctccaggtcaagtctgtcggtgagaatgcacagcttgggaccg 35456 Query: 135 gctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcgg 194 |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 35457 attgcagcaaatccagttcaaagtggcagctaatatcaaattcaggaatgcatgtttcga 35516 Query: 195 ccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatca 254 | |||||||| || ||||| || ||||| ||| ||||||| ||||| ||| |||||| Sbjct: 35517 ctgaactcactaaaaatggaaccagagtatgcctggatgccactcctgatggtatcatca 35576 Query: 255 caacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggt 314 |||| ||| ||||||||||| |||| |||||||| ||| | |||||||||||||||| Sbjct: 35577 caacaaatccgtgcaagtgcctaaccggagatccaaattgcaatcctgagagccagtggt 35636 Query: 315 tcaaagttatat 326 ||||| |||||| Sbjct: 35637 tcaaaattatat 35648 Score = 121 bits (61), Expect = 3e-24 Identities = 205/253 (81%) Strand = Plus / Plus Query: 74 aaacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggact 133 ||||||||||| |||||||| |||| |||||||| ||||| | ||||||||| || || Sbjct: 30521 aaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcacc 30580 Query: 134 ggctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcg 193 | |||||||||||| |||| |||||| ||||| |||| ||||||||||||||||||| Sbjct: 30581 agttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttca 30640 Query: 194 gccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatc 253 | ||||||||||| || || || ||||| |||||||| || | ||||| || ||| Sbjct: 30641 actgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatc 30700 Query: 254 acaacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtgg 313 || || |||| ||||||||||| |||| |||||| | ||| | |||||||| |||||| Sbjct: 30701 acgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtgg 30760 Query: 314 ttcaaagttatat 326 |||||| |||||| Sbjct: 30761 ttcaaaattatat 30773 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 292 ctgcgaccctgagagccagtggttcaa 318 ||||||||| ||||||||||||||||| Sbjct: 39827 ctgcgacccggagagccagtggttcaa 39853
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 190 bits (96), Expect = 3e-45 Identities = 258/312 (82%) Strand = Plus / Plus Query: 15 tgggtccgtgcgatgaatcgaacgcttggaactacacctccacgtatgagcttgtgctga 74 ||||||| || |||||||| ||||||||||||||||| || || | ||| | || ||| Sbjct: 24038358 tgggtccatgtgatgaatcaaacgcttggaactacacatcaacacacgagttggtactgc 24038417 Query: 75 aacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggactg 134 |||| ||||| |||||||| ||| ||||||||| ||||| | |||| |||| ||||| | Sbjct: 24038418 aacacactggtcaatgcctccaggtcaagtctgtcggtgagaatgcacagcttgggaccg 24038477 Query: 135 gctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcgg 194 |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 24038478 attgcagcaaatccagttcaaagtggcagctaatatcaaattcaggaatgcatgtttcga 24038537 Query: 195 ccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatca 254 | |||||||| || ||||| || ||||| ||| ||||||| ||||| ||| |||||| Sbjct: 24038538 ctgaactcactaaaaatggaaccagagtatgcctggatgccactcctgatggtatcatca 24038597 Query: 255 caacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggt 314 |||| ||| ||||||||||| |||| |||||||| ||| | |||||||||||||||| Sbjct: 24038598 caacaaatccgtgcaagtgcctaaccggagatccaaattgcaatcctgagagccagtggt 24038657 Query: 315 tcaaagttatat 326 ||||| |||||| Sbjct: 24038658 tcaaaattatat 24038669 Score = 121 bits (61), Expect = 3e-24 Identities = 205/253 (81%) Strand = Plus / Plus Query: 74 aaacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggact 133 ||||||||||| |||||||| |||| |||||||| ||||| | ||||||||| || || Sbjct: 24033542 aaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcacc 24033601 Query: 134 ggctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcg 193 | |||||||||||| |||| |||||| ||||| |||| ||||||||||||||||||| Sbjct: 24033602 agttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttca 24033661 Query: 194 gccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatc 253 | ||||||||||| || || || ||||| |||||||| || | ||||| || ||| Sbjct: 24033662 actgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatc 24033721 Query: 254 acaacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtgg 313 || || |||| ||||||||||| |||| |||||| | ||| | |||||||| |||||| Sbjct: 24033722 acgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtgg 24033781 Query: 314 ttcaaagttatat 326 |||||| |||||| Sbjct: 24033782 ttcaaaattatat 24033794 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 292 ctgcgaccctgagagccagtggttcaa 318 ||||||||| ||||||||||||||||| Sbjct: 24042848 ctgcgacccggagagccagtggttcaa 24042874
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 190 bits (96), Expect = 3e-45 Identities = 258/312 (82%) Strand = Plus / Plus Query: 15 tgggtccgtgcgatgaatcgaacgcttggaactacacctccacgtatgagcttgtgctga 74 ||||||| || |||||||| ||||||||||||||||| || || | ||| | || ||| Sbjct: 4608 tgggtccatgtgatgaatcaaacgcttggaactacacatcaacacacgagttggtactgc 4667 Query: 75 aacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggactg 134 |||| ||||| |||||||| ||| ||||||||| ||||| | |||| |||| ||||| | Sbjct: 4668 aacacactggtcaatgcctccaggtcaagtctgtcggtgagaatgcacagcttgggaccg 4727 Query: 135 gctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcgg 194 |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 4728 attgcagcaaatccagttcaaagtggcagctaatatcaaattcaggaatgcatgtttcga 4787 Query: 195 ccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatca 254 | |||||||| || ||||| || ||||| ||| ||||||| ||||| ||| |||||| Sbjct: 4788 ctgaactcactaaaaatggaaccagagtatgcctggatgccactcctgatggtatcatca 4847 Query: 255 caacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggt 314 |||| ||| ||||||||||| |||| |||||||| ||| | |||||||||||||||| Sbjct: 4848 caacaaatccgtgcaagtgcctaaccggagatccaaattgcaatcctgagagccagtggt 4907 Query: 315 tcaaagttatat 326 ||||| |||||| Sbjct: 4908 tcaaaattatat 4919 Score = 91.7 bits (46), Expect = 2e-15 Identities = 154/190 (81%) Strand = Plus / Plus Query: 137 tgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcggcc 196 |||||||||||| |||| |||||| ||||| |||| ||||||||||||||||||| | Sbjct: 16 tgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttcaact 75 Query: 197 gaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatcaca 256 ||||||||||| || || || ||||| |||||||| || | ||||| || ||||| Sbjct: 76 gaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatcacg 135 Query: 257 acggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtggttc 316 || |||| ||||||||||| |||| |||||| | ||| | |||||||| ||||||||| Sbjct: 136 acaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtggttc 195 Query: 317 aaagttatat 326 ||| |||||| Sbjct: 196 aaaattatat 205 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 292 ctgcgaccctgagagccagtggttcaa 318 ||||||||| ||||||||||||||||| Sbjct: 9090 ctgcgacccggagagccagtggttcaa 9116
>ref|XM_472909.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1665 Score = 121 bits (61), Expect = 3e-24 Identities = 205/253 (81%) Strand = Plus / Plus Query: 74 aaacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggact 133 ||||||||||| |||||||| |||| |||||||| ||||| | ||||||||| || || Sbjct: 1330 aaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcacc 1389 Query: 134 ggctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcg 193 | |||||||||||| |||| |||||| ||||| |||| ||||||||||||||||||| Sbjct: 1390 agttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttca 1449 Query: 194 gccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatc 253 | ||||||||||| || || || ||||| |||||||| || | ||||| || ||| Sbjct: 1450 actgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatc 1509 Query: 254 acaacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtgg 313 || || |||| ||||||||||| |||| |||||| | ||| | |||||||| |||||| Sbjct: 1510 acgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtgg 1569 Query: 314 ttcaaagttatat 326 |||||| |||||| Sbjct: 1570 ttcaaaattatat 1582
>dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E03, full insert sequence Length = 1992 Score = 121 bits (61), Expect = 3e-24 Identities = 205/253 (81%) Strand = Plus / Plus Query: 74 aaacaaactgggcaatgccttgaggccaagtctgtgggtgatactgcaaagctcgggact 133 ||||||||||| |||||||| |||| |||||||| ||||| | ||||||||| || || Sbjct: 1340 aaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcacc 1399 Query: 134 ggctgcagcaaatcctgttcgaagtggcagctaatatctgattcaggaatgcatgtttcg 193 | |||||||||||| |||| |||||| ||||| |||| ||||||||||||||||||| Sbjct: 1400 agttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttca 1459 Query: 194 gccgaactcaccaagaatgggactagagtgtgcttggatgcgggccctgacggtgtcatc 253 | ||||||||||| || || || ||||| |||||||| || | ||||| || ||| Sbjct: 1460 actgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatc 1519 Query: 254 acaacggatcaatgcaagtgcctgaccgaagatccaacctgcgaccctgagagccagtgg 313 || || |||| ||||||||||| |||| |||||| | ||| | |||||||| |||||| Sbjct: 1520 acgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtgg 1579 Query: 314 ttcaaagttatat 326 |||||| |||||| Sbjct: 1580 ttcaaaattatat 1592
>ref|XM_472911.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1668 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 292 ctgcgaccctgagagccagtggttcaa 318 ||||||||| ||||||||||||||||| Sbjct: 1548 ctgcgacccggagagccagtggttcaa 1574
>dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E08, full insert sequence Length = 2877 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 292 ctgcgaccctgagagccagtggttcaa 318 ||||||||| ||||||||||||||||| Sbjct: 384 ctgcgacccggagagccagtggttcaa 358
>ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC548975 (LOC548975), mRNA Length = 2625 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 ctggctgcagcaaatcctgtt 152 ||||||||||||||||||||| Sbjct: 1520 ctggctgcagcaaatcctgtt 1540
>emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13 Length = 2625 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 ctggctgcagcaaatcctgtt 152 ||||||||||||||||||||| Sbjct: 1520 ctggctgcagcaaatcctgtt 1540
>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete sequence Length = 131465 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 taagcactttctttttctgt 570 |||||||||||||||||||| Sbjct: 95267 taagcactttctttttctgt 95286
>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163077 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcatgccaggtgaggcctct 358 |||||||||||||||||||| Sbjct: 150021 gcatgccaggtgaggcctct 150040
>gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine phosphatase-rho (Ptprt) gene, exons 10 and 11 and partial cds Length = 5957 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 agaggcatgccaggtgaggcctct 358 |||||||||| ||||||||||||| Sbjct: 3400 agaggcatgcaaggtgaggcctct 3377
>gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 IMAGE:6866732), complete cds Length = 2642 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ctggctgcagcaaatcctgt 151 |||||||||||||||||||| Sbjct: 1548 ctggctgcagcaaatcctgt 1567
>gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds Length = 2616 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ctggctgcagcaaatcctgt 151 |||||||||||||||||||| Sbjct: 1543 ctggctgcagcaaatcctgt 1562
>emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chromosome 2, complete sequence Length = 187043 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 agaggcatgccaggtgaggcctct 358 |||||||||| ||||||||||||| Sbjct: 154938 agaggcatgcaaggtgaggcctct 154961 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,137,010 Number of Sequences: 3902068 Number of extensions: 4137010 Number of successful extensions: 72731 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72682 Number of HSP's gapped (non-prelim): 41 length of query: 571 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 548 effective length of database: 17,143,297,704 effective search space: 9394527141792 effective search space used: 9394527141792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
