No.
Definition
Score (bits)
E Value
1 dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clon...
466
e-128
2 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
135
2e-28
3 dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic D...
135
2e-28
4 dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic D...
135
2e-28
5 gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
44
0.45
6 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
44
0.45
7 gb|AC165171.2| Zea mays clone CH201-145P10, complete sequence
44
0.45
8 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.45
9 gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome...
44
0.45
10 gb|AC104215.11| Mus musculus chromosome 7, clone RP23-44I18, com...
42
1.8
11 ref|XM_610035.2| PREDICTED: Bos taurus similar to Liprin-alpha 4...
42
1.8
12 ref|NM_001009553.1| Homo sapiens nanos homolog 1 (Drosophila) (N...
42
1.8
13 ref|NM_199461.2| Homo sapiens nanos homolog 1 (Drosophila) (NANO...
42
1.8
14 gb|AF458985.1| Homo sapiens EC_Rep1a mRNA, complete cds
42
1.8
15 emb|AL157788.16| Human DNA sequence from clone RP11-498J9 on chr...
42
1.8
16 dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
42
1.8
17 emb|AJ328986.1|HSA328986 Homo sapiens genomic sequence surroundi...
42
1.8
18 gb|AC116683.7| Mus musculus chromosome 7, clone RP24-472H13, com...
42
1.8
19 ref|XM_917520.2| PREDICTED: Mus musculus similar to Spectrin bet...
40
7.0
20 gb|CP000316.1| Polaromonas sp. JS666, complete genome
40
7.0
21 gb|AF527964.1| Mycobacterium avium isolate locus 8 insertion seq...
40
7.0
22 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
40
7.0
23 dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic D...
40
7.0
24 dbj|AK119955.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
7.0
25 gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1)...
40
7.0
26 gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, comple...
40
7.0
27 emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chr...
40
7.0
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 135 bits (68), Expect = 2e-28
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 121 aggtgaaccgggtgcagaggacgctggtggaggcatgggggctgatccgtgagaccttcg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 12189189 aggtgaaccgggtgcagaggacgctggtggaggcgtgggggctgatccgtgagaccttcg 12189248
Query: 181 tagaccccaccttcaaccaccaag 204
| || ||||||||||| |||||||
Sbjct: 12189249 tggatcccaccttcaatcaccaag 12189272
Score = 117 bits (59), Expect = 4e-23
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 222 cagcagacgatggtggagatgttcccgctgaaatcggcagacgccgcctacggcaagatc 281
|||||||| |||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 12189414 cagcagaccatggtggagatgttcccgctgaaatcggaggatgccgcctatggtaagatc 12189473
Query: 282 agcgggatggtgtccacgctaggggaccctttcacaaagatcatcacccccaagg 336
||||||||| ||||||| || || || || ||||| |||||||||| ||||||||
Sbjct: 12189474 agcgggatgctgtccacactcggcgatccgttcaccaagatcatcagccccaagg 12189528
Score = 101 bits (51), Expect = 2e-18
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 63 ccgccgccggcgcgggccgagtcgctcaccgtcgccttccccgtctccaaggcccgagag 122
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 12189027 ccgccgccggcgcgggccgagtcgctcaccgtcgcgttccctgtctccaaggcccgcgag 12189086
Query: 123 gtg 125
|||
Sbjct: 12189087 gtg 12189089
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 422 gcttgttatgaactgcattgacggaggcccagccgacagagcaggcatacacgaaggcga 481
|||||||||| |||||||||| || |||||||| || |||||||| | || | ||||||
Sbjct: 12189793 gcttgttatggactgcattgaaggtggcccagcagatcgagcaggcctgcatggaggcga 12189852
Query: 482 tgagctagttgagatcaatgg 502
||| |||||||||||| ||||
Sbjct: 12189853 tgaactagttgagatcgatgg 12189873
Score = 63.9 bits (32), Expect = 5e-07
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 334 aggaatatcagagtttcaagatcggaagcgatgggaatttgcaaggggttgg 385
|||||||||||||||||| ||| ||||||||||||| | | |||||||||||
Sbjct: 12189624 aggaatatcagagtttcaggattggaagcgatgggagtgtccaaggggttgg 12189675
Score = 40.1 bits (20), Expect = 7.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 ccgccgccggcgcgggccga 82
||||||||||||||||||||
Sbjct: 7105103 ccgccgccggcgcgggccga 7105122
>dbj|AP003543.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0592B08
Length = 131096
Score = 135 bits (68), Expect = 2e-28
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 121 aggtgaaccgggtgcagaggacgctggtggaggcatgggggctgatccgtgagaccttcg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 26211 aggtgaaccgggtgcagaggacgctggtggaggcgtgggggctgatccgtgagaccttcg 26270
Query: 181 tagaccccaccttcaaccaccaag 204
| || ||||||||||| |||||||
Sbjct: 26271 tggatcccaccttcaatcaccaag 26294
Score = 117 bits (59), Expect = 4e-23
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 222 cagcagacgatggtggagatgttcccgctgaaatcggcagacgccgcctacggcaagatc 281
|||||||| |||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 26436 cagcagaccatggtggagatgttcccgctgaaatcggaggatgccgcctatggtaagatc 26495
Query: 282 agcgggatggtgtccacgctaggggaccctttcacaaagatcatcacccccaagg 336
||||||||| ||||||| || || || || ||||| |||||||||| ||||||||
Sbjct: 26496 agcgggatgctgtccacactcggcgatccgttcaccaagatcatcagccccaagg 26550
Score = 101 bits (51), Expect = 2e-18
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 63 ccgccgccggcgcgggccgagtcgctcaccgtcgccttccccgtctccaaggcccgagag 122
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 26049 ccgccgccggcgcgggccgagtcgctcaccgtcgcgttccctgtctccaaggcccgcgag 26108
Query: 123 gtg 125
|||
Sbjct: 26109 gtg 26111
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 422 gcttgttatgaactgcattgacggaggcccagccgacagagcaggcatacacgaaggcga 481
|||||||||| |||||||||| || |||||||| || |||||||| | || | ||||||
Sbjct: 26815 gcttgttatggactgcattgaaggtggcccagcagatcgagcaggcctgcatggaggcga 26874
Query: 482 tgagctagttgagatcaatgg 502
||| |||||||||||| ||||
Sbjct: 26875 tgaactagttgagatcgatgg 26895
Score = 63.9 bits (32), Expect = 5e-07
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 334 aggaatatcagagtttcaagatcggaagcgatgggaatttgcaaggggttgg 385
|||||||||||||||||| ||| ||||||||||||| | | |||||||||||
Sbjct: 26646 aggaatatcagagtttcaggattggaagcgatgggagtgtccaaggggttgg 26697
>dbj|AP003507.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0468A12
Length = 143018
Score = 135 bits (68), Expect = 2e-28
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 121 aggtgaaccgggtgcagaggacgctggtggaggcatgggggctgatccgtgagaccttcg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 131978 aggtgaaccgggtgcagaggacgctggtggaggcgtgggggctgatccgtgagaccttcg 132037
Query: 181 tagaccccaccttcaaccaccaag 204
| || ||||||||||| |||||||
Sbjct: 132038 tggatcccaccttcaatcaccaag 132061
Score = 117 bits (59), Expect = 4e-23
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 222 cagcagacgatggtggagatgttcccgctgaaatcggcagacgccgcctacggcaagatc 281
|||||||| |||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 132203 cagcagaccatggtggagatgttcccgctgaaatcggaggatgccgcctatggtaagatc 132262
Query: 282 agcgggatggtgtccacgctaggggaccctttcacaaagatcatcacccccaagg 336
||||||||| ||||||| || || || || ||||| |||||||||| ||||||||
Sbjct: 132263 agcgggatgctgtccacactcggcgatccgttcaccaagatcatcagccccaagg 132317
Score = 101 bits (51), Expect = 2e-18
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 63 ccgccgccggcgcgggccgagtcgctcaccgtcgccttccccgtctccaaggcccgagag 122
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 131816 ccgccgccggcgcgggccgagtcgctcaccgtcgcgttccctgtctccaaggcccgcgag 131875
Query: 123 gtg 125
|||
Sbjct: 131876 gtg 131878
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 422 gcttgttatgaactgcattgacggaggcccagccgacagagcaggcatacacgaaggcga 481
|||||||||| |||||||||| || |||||||| || |||||||| | || | ||||||
Sbjct: 132582 gcttgttatggactgcattgaaggtggcccagcagatcgagcaggcctgcatggaggcga 132641
Query: 482 tgagctagttgagatcaatgg 502
||| |||||||||||| ||||
Sbjct: 132642 tgaactagttgagatcgatgg 132662
Score = 63.9 bits (32), Expect = 5e-07
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 334 aggaatatcagagtttcaagatcggaagcgatgggaatttgcaaggggttgg 385
|||||||||||||||||| ||| ||||||||||||| | | |||||||||||
Sbjct: 132413 aggaatatcagagtttcaggattggaagcgatgggagtgtccaaggggttgg 132464
>gb|AY530950.1 | Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5),
epsilon-COP (Z438D03.6), putative kinase (Z438D03.7),
unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes,
complete cds
Length = 185988
Score = 40.1 bits (20), Expect = 7.0
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 221 tcagcagacgatggtggagatgtt 244
||||||||||||| ||||||||||
Sbjct: 13065 tcagcagacgatgatggagatgtt 13088
>emb|AL833774.4 | Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete
sequence
Length = 194045
Score = 40.1 bits (20), Expect = 7.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 145 tggtggaggcatgggggctg 164
||||||||||||||||||||
Sbjct: 102196 tggtggaggcatgggggctg 102177
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,382,890
Number of Sequences: 3902068
Number of extensions: 3382890
Number of successful extensions: 64055
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63358
Number of HSP's gapped (non-prelim): 696
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)