ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2g01 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 184 bits (466), Expect = 6e-47 Identities = 88/96 (91%), Positives = 88/96 (91%) Frame = +1 Query: 1 KLGGVRPSARPSLVIXXXXXXXXQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKY 180 KLGGVRPSARPSLVI QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKY Sbjct: 23 KLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKY 82 Query: 181 GANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 288 GANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT Sbjct: 83 GANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 119 bits (298), Expect = 2e-27 Identities = 53/73 (72%), Positives = 61/73 (83%) Frame = +1 Query: 70 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 249 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 250 VGGKTGLFLWAVT 288 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 119 bits (298), Expect = 2e-27 Identities = 53/73 (72%), Positives = 61/73 (83%) Frame = +1 Query: 70 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 249 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 250 VGGKTGLFLWAVT 288 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 118 bits (295), Expect = 4e-27 Identities = 52/73 (71%), Positives = 61/73 (83%) Frame = +1 Query: 70 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 249 +T +PYG G ++ ++GVDASGR KGKGVYQF DKYGANVDGYSPIY ++WSPSGDVY Sbjct: 44 KTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103 Query: 250 VGGKTGLFLWAVT 288 VGG TGL +WAVT Sbjct: 104 VGGTTGLAIWAVT 116
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 113 bits (282), Expect = 1e-25 Identities = 49/70 (70%), Positives = 57/70 (81%) Frame = +1 Query: 79 QPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGG 258 +P G GGG+ ++GVD+SGR GKGVYQF DKYGANVDGYSPIY EEW+P+GDVY GG Sbjct: 51 KPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGG 110 Query: 259 KTGLFLWAVT 288 TGL +WAVT Sbjct: 111 TTGLLIWAVT 120
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 111 bits (277), Expect = 5e-25 Identities = 52/88 (59%), Positives = 61/88 (69%) Frame = +1 Query: 25 ARPSLVIXXXXXXXXQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYS 204 ARPS I +T +P+G G + ++GVDASGR KG GVY++ DKYGANVDGYS Sbjct: 33 ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYS 92 Query: 205 PIYTPEEWSPSGDVYVGGKTGLFLWAVT 288 PIY EWS SGDVY GG TGL +WAVT Sbjct: 93 PIYNENEWSASGDVYKGGVTGLAIWAVT 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 107 bits (267), Expect = 7e-24 Identities = 48/73 (65%), Positives = 57/73 (78%) Frame = +1 Query: 70 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 249 +T +P+G G + ++GVDASGR KG GVY+F DKYGANVDGYSPIY +EWS SGDVY Sbjct: 49 KTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108 Query: 250 VGGKTGLFLWAVT 288 GG TGL +WAVT Sbjct: 109 KGGVTGLAIWAVT 121
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 97 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 189 GGV +G A+ R+A+G + FADK GA+ Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 118 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 237 G+ A+GR G F+ ++ G+SP Y+P WSP+ Sbjct: 27 GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65
>ALB2_PEA (P08688) Albumin-2 (PA2)| Length = 231 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 100 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 195 G F+ G+DA+ R +GK VY F A +D Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = +3 Query: 117 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRLCWRKDGAVS-LGS 284 R R ++GS +GEG P+ VW W Q ++ R + +K KD V LG+ Sbjct: 63 RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115 Query: 285 DSCWNSA 305 + C++S+ Sbjct: 116 EHCYDSS 122
>METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 403 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +1 Query: 70 QTAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDG 198 QT QPYG V E V+A RVA G+ QFA G ++ G Sbjct: 138 QTGQPYGARFPVVTVEDWVNAQARVADRFGIRQFAAVMGGSLGG 181
>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| Length = 3034 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +3 Query: 39 GHSGQEGEEGPDCPTLRAWWWSGVQGRRRCVWKGSQGEGCLPVCRQVWSKC 191 GH GQ E D P + WW + V G C + +G P C + +C Sbjct: 1954 GHYGQYCENKVDLPCPKGWWGNPVCGPCHC----AVSQGFDPDCNKTNGQC 2000
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 29.3 bits (64), Expect = 2.4 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = -3 Query: 311 PPSRIPARVTAQRNSPV---FPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 141 PP A T SP+ P SP G G+ P + SA+ P PLA Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570 Query: 140 TLPDASTPSLNATPPPG 90 P +P+LN PPG Sbjct: 571 RPPSTPSPTLNPGSPPG 587
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = -3 Query: 269 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 102 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 259 Query: 101 PPPG 90 PP G Sbjct: 260 PPGG 263
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -3 Query: 299 IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 168 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638
>BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin| reductase subunit Z) Length = 487 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = -2 Query: 186 CSILVGKLVNTLPLGYPSRRIDAFLERHSTTRP 88 C+ L L N LPLG RIDA R +RP Sbjct: 396 CNALFDALFNILPLGTELDRIDATPSRRGDSRP 428
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -1 Query: 331 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 224 Y R + +P + QQ+ L + P QH+++H ++T Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386
>SCRL2_ORYSA (Q5QNA6) SCAR-like protein 2| Length = 1334 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/64 (28%), Positives = 25/64 (39%) Frame = -3 Query: 197 PSTFAPYLSANW*TPFPLATLPDASTPSLNATPPPGP*GWAVWTFFAFLATMTNDGLADG 18 P P LS P P + +TP N PGP + A++ T+ N L D Sbjct: 516 PDISEPVLSGYTANPHPEVSAIATNTPVSNTEDAPGPLEISESASRAYIITLPNQSLPDS 575 Query: 17 RTPP 6 + P Sbjct: 576 KEIP 579
>ZN440_HUMAN (Q8IYI8) Zinc finger protein 440| Length = 595 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 15/80 (18%) Frame = -1 Query: 310 RPAEFQQESLPRETAPSFLQHKRRHLETTLLVC--------------I*GCTHQHL-LHT 176 +P E+Q+ + S+ +H+R H+ C I TH L+ Sbjct: 254 KPYEYQECGKAFHSPRSYRRHERIHMGEKAYQCKECGKAFTCPRYVRIHERTHSRKNLYE 313 Query: 175 CRQTGKHPSPWLPFQTHRRL 116 C+Q GK S FQTH RL Sbjct: 314 CKQCGKALSSLTSFQTHVRL 333
>MURI_RHILO (Q98NP9) Glutamate racemase (EC 5.1.1.3)| Length = 262 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = -1 Query: 292 QESLPRETAPSFLQHKRRHLETTLLVCI*GCTH-QHLLHTCRQTGKHPSPWL 140 +E++ E AP F++H+ + +L CTH L++ R+T P W+ Sbjct: 163 EEAVRAEIAPCFMEHEGLRTDIVVL----ACTHYPFLVNRMRKTAPWPVDWI 210
>RTCA_AERPE (Q9YES0) Probable RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)| (RNA-3'-phosphate cyclase) (RNA cyclase) Length = 353 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 196 GYSPIYTPEEWSPSGDVYVGGKTGLFLWAV 285 G PI E + P D ++G TG+ +WAV Sbjct: 216 GVDPIVEIEAYKPHRDPHLGPGTGVLVWAV 245
>TOM40_RAT (Q75Q40) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) (38 kDa mitochondrial outer membrane protein) (OM38) Length = 361 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = -3 Query: 149 PLATLPDASTPSLNATPPP--GP*GWAVWTFFAFLATMTNDGLADGRTP 9 P A P TPSL PPP P G+ + L T +N G RTP Sbjct: 10 PPAGPPPPPTPSLVGLPPPPPSPPGFTLPPLGGGLGTGSNAGRGSERTP 58
>TF7L1_HUMAN (Q9HCS4) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) Length = 588 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = -3 Query: 269 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 102 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 203 SPGSPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 262 Query: 101 PPPG 90 PP G Sbjct: 263 PPGG 266
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 97 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 189 GGV G S R+++G + FA+K GAN Sbjct: 440 GGVMLPRGNGQSVRLSRGASLTDFAEKIGAN 470
>PHK_RHOBA (Q7UH14) Probable phosphoketolase (EC 4.1.2.-)| Length = 793 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +3 Query: 12 RATIGEAVVGHSGQEGEEGPDCPTLRAWWWS 104 +A + E +V H E G D P +R W WS Sbjct: 760 KALMQEKLVEHRRYINENGQDMPEIRDWEWS 790
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/79 (29%), Positives = 30/79 (37%) Frame = -3 Query: 323 TRRAPPSRIPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPL 144 T PP+ P+ T SP T T P S I PS ++ T P Sbjct: 1648 TTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSP-ITTTPSPPTTTMTTPSPTTTPS 1706 Query: 143 ATLPDASTPSLNATPPPGP 87 + + +TPS TP P P Sbjct: 1707 SPITTTTTPSSTTTPSPPP 1725
>C75A6_CAMME (O04773) Flavonoid 3',5'-hydroxylase (EC 1.14.13.88) (F3'5'H)| (Cytochrome P450 75A6) Length = 523 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 119 PSLNATPPPGP*GWAVWTFFAFLATMTNDGLAD 21 PS + PPGP GW + L TM + LAD Sbjct: 32 PSHHHHLPPGPTGWPIIGALPLLGTMPHVSLAD 64
>L52_ADE12 (P36715) Late L1 52 kDa protein| Length = 373 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 12 RATIGEAVVGHSGQEGEEGPDCPTL 86 RAT A V SG +E P CPTL Sbjct: 13 RATTASAAVALSGSGEQEEPQCPTL 37
>IF2_COREF (Q8FPA7) Translation initiation factor IF-2| Length = 964 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 97 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 189 GGV +G + R+A+G + FADK GA+ Sbjct: 360 GGVRLPDGRGQTLRLARGASLSDFADKIGAD 390
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -3 Query: 197 PSTFAPYLSANW*TPFPLATLPDASTPSLNATPPP 93 P +FAP+L + PFP P P ATPPP Sbjct: 258 PPSFAPFLVSTTPGPFP----PPQGFPPGYATPPP 288
>G3P_DICDI (Q94469) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) (Fragment) Length = 299 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +1 Query: 139 VAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFL 276 V G ++ FA+K AN+ +WS G Y+ TGLFL Sbjct: 54 VVNGNKIHVFAEKDPANI----------KWSSVGAEYIVESTGLFL 89
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 27.7 bits (60), Expect = 6.9 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Frame = -3 Query: 314 APPSRIPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLATL 135 +PP+ P P PT P H+ Y +P T+ P + P P Sbjct: 208 SPPTYTPTPKPPATKPPTSTPTHPKPT-PHTP--YPQAHPPTYKPAPKPSPPAPTPPTYT 264 Query: 134 PDAS-TPSLNATPPPGP 87 P S TPS PPP P Sbjct: 265 PPVSHTPSSPPPPPPPP 281
>KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)| Length = 1826 Score = 27.7 bits (60), Expect = 6.9 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Frame = -3 Query: 308 PSRIPA-----RVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPL 144 P+++P+ VTA +P SPL + SSG Y ST Sbjct: 1532 PAKVPSPPPVIAVTAVTPAPEAQDGPPSPLSEASSG-YFSHSVST--------------- 1575 Query: 143 ATLPDASTPSLNATPPPG 90 ATL DA P L+A PPG Sbjct: 1576 ATLSDALGPGLDAAAPPG 1593
>DED1_ASPFU (Q4WP13) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 674 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = +1 Query: 133 GRVAKGKGVYQFAD--KYGANVDGYSPIYTPEEWSPSGDVYVGGKTG 267 GR +G+G D + G NV G P + +PSG Y GG G Sbjct: 595 GRGGRGRGGNATRDMRRMGGNVGGGGPSFGGGYGAPSGSSYGGGAGG 641
>TAB3_XENLA (Q7ZXH3) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 homolog Length = 692 Score = 27.3 bits (59), Expect = 9.0 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Frame = -3 Query: 311 PPSRIPARVTAQRNSPVFPP---T*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFP-- 147 P S + T+Q SP P T+ L +S V++ PST +P+L P+P Sbjct: 264 PQSAFRSPPTSQCTSPYSSPQHQVQTNQLSHQTSHVFLPPSPSTVSPHLYQQAPPPYPKQ 323 Query: 146 --LATLPDASTPSLNATP 99 L LP P LN P Sbjct: 324 SSLGYLPYG--PGLNKGP 339
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 10/89 (11%) Frame = -3 Query: 323 TRRAPP------SRIPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPS----TFAPYL 174 +R PP SR+ T + P T+ H S I + + T P + Sbjct: 103 SRSGPPPSSGMSSRVNLPTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNM 162 Query: 173 SANW*TPFPLATLPDASTPSLNATPPPGP 87 A++ +P +T+P ++P PPP P Sbjct: 163 GASFGSPTFSSTVPSTASPMNTVPPPPIP 191
>E2F1_MOUSE (Q61501) Transcription factor E2F1 (E2F-1)| Length = 430 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 146 LATLPDASTPSLNATPPPGP 87 ++T PD P L A PP GP Sbjct: 34 ISTAPDVGAPQLPAAPPTGP 53
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/60 (33%), Positives = 25/60 (41%) Frame = +1 Query: 88 GPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTG 267 G GG F G + SGR G G + YG + DGY+ + G Y GG G Sbjct: 208 GFGGNDNFGRGGNFSGR--GGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRG 265
>LIG5_PHACH (P11543) Ligninase LG5 precursor (EC 1.11.1.14) (Diarylpropane| peroxidase) (Lignin peroxidase) Length = 371 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = -3 Query: 158 TPFP-LATLPDASTPSLNATPPPG 90 TPFP L+TLP +T PPPG Sbjct: 347 TPFPTLSTLPGPATSVARIPPPPG 370
>OVUH_LYMST (P06308) Ovulation prohormone precursor [Contains: Beta-3-CDCP;| Beta-2-CDCP; Beta-1-CDCP; Calfluxin; Alpha-CDCP; Ovulation hormone (Cerebral neurosecretory caudodorsal cell hormone) (CDCH); X-CDCP] Length = 259 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +1 Query: 112 KEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVG 255 ++ D G V + + YG+N P+Y E+ S DVYVG Sbjct: 42 RDRYDKRSPTGHGVEVVESGEDYGSNRP--QPVYGDEDEEDSADVYVG 87
>RDRP_P1AMV (Q07518) RNA replication protein (156 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1385 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/57 (28%), Positives = 23/57 (40%) Frame = -1 Query: 289 ESLPRETAPSFLQHKRRHLETTLLVCI*GCTHQHLLHTCRQTGKHPSPWLPFQTHRR 119 + LPR T P+ Q G + +L T R + P+PW P +T R Sbjct: 580 QELPRATLPAHWQ---------------GHNLERILSTLRSLNRFPTPWSPDRTRAR 621
>PHK_BRAJA (Q89S87) Probable phosphoketolase (EC 4.1.2.-)| Length = 801 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +3 Query: 27 EAVVGHSGQEGEEGPDCPTLRAWWWSGVQG 116 + ++ HS E G D P +R W W G G Sbjct: 772 DKLLEHSRYVREHGEDMPEIRDWVWPGKPG 801
>FRDA_PROVU (P20922) Fumarate reductase flavoprotein subunit (EC 1.3.99.1)| Length = 598 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = +1 Query: 91 PGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPE 222 PG G+ EG G + K Y++ YG + +P+ PE Sbjct: 238 PGSGILMTEGCRGEGGILVNKDGYRYLQDYGLGPE--TPLGKPE 279
>METX_RALEJ (Q476W5) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 390 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +1 Query: 73 TAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDGYSPI 210 T +PYG V E V+A RVA G+ QFA G ++ G + Sbjct: 126 TGEPYGAAFPVVTVEDWVNAQARVADVFGITQFAAVMGGSLGGMQAV 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.137 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,689,135 Number of Sequences: 219361 Number of extensions: 1494276 Number of successful extensions: 3968 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 3622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3952 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
