ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal2g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 775 0.0
2emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 551 e-154
3emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 333 3e-88
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 256 5e-65
5dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 5e-65
6dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
7ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 190 2e-45
8gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 121 2e-24
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
10dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
11emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 90 6e-15
12gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 86 1e-13
13gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 84 4e-13
14dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
15emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 78 2e-11
16gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypept... 66 9e-08
17emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 62 1e-06
18gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypep... 62 1e-06
19emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 54 4e-04
20dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.001
21dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.001
22emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS... 48 0.022
23gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.34
24dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complet... 44 0.34
25ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 42 1.3
26gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.3
27gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.3
28gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 42 1.3
29gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 42 1.3
30gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-relat... 42 1.3
31emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 42 1.3
32emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Co... 42 1.3
33emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Co... 42 1.3
34emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 42 1.3
35emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Co... 42 1.3
36emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 42 1.3
37gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 42 1.3
38emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 42 1.3
39gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone... 42 1.3
40gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 5.3
41gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, com... 40 5.3
42gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, co... 40 5.3
43gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
44gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 5.3
45gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
46gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 5.3
47gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 5.3
48gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 5.3
49gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.3
50dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 5.3
51dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
52dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor... 40 5.3
53dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
54gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 5.3
55dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full ... 40 5.3
56gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  775 bits (391), Expect = 0.0
 Identities = 393/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcttggaggcgtgcgaccatcggcgaggccgtcgttggtcatagtggccaagaaggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  aagcttggaggcgtgcgaccatcggcgaggccgtcgttggtcatagtggccaagaaggcg 152

                                                                       
Query: 61  aagaaggtccagactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aagaaggtccagactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggc 212

                                                                       
Query: 121 gtcgatgcgtctggaagggtagccaaggggaagggtgtttaccagtttgccgacaagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gtcgatgcgtctggaagggtagccaaggggaagggtgtttaccagtttgccgacaagtat 272

                                                                       
Query: 181 ggagcaaatgttgatgggtacagccctatatacacaccagaagagtggtctccaagtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggagcaaatgttgatgggtacagccctatatacacaccagaagagtggtctccaagtggc 332

                                                                       
Query: 241 gacgtttatgttggaggaaagacggggctgtttctctgggcagtgactcttgctggaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gacgtttatgttggaggaaagacggggctgtttctctgggcagtgactcttgctggaatt 392

                                                                       
Query: 301 ctgctgggcggtgctcttcttgtctacagtactagcgccttggcttcctgaagcctatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctgctgggcggtgctcttcttgtctacagtactagcgccttggcttcctgaagcctatgt 452

                                             
Query: 361 gcancaaaccaagctatgcaccaaacgatgtgta 394
           ||| ||||||||||||||||||||||||||||||
Sbjct: 453 gcagcaaaccaagctatgcaccaaacgatgtgta 486
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  551 bits (278), Expect = e-154
 Identities = 294/298 (98%), Gaps = 2/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcttggaggcgtgcgaccatcggcgaggccgtcgttggtcatagtggccaagaaggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  aagcttggaggcgtgcgaccatcggcgaggccgtcgttggtcatagtggccaagaaggcg 139

                                                                       
Query: 61  aagaaggtccagactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 aagaaggtccagactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggc 199

                                                                       
Query: 121 gtcgatgcgtc-tggaagggtagccaaggggaagggtgtttaccagtttg-ccgacaagt 178
           ||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 200 gtcgatgcgtcttggaagggtagccaaggggaagggtgtttaccagtthdnccgacaagt 259

                                                                       
Query: 179 atggagcaaatgttgatgggtacagccctatatacacaccagaagagtggtctccaagtg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atggagcaaatgttgatgggtacagccctatatacacaccagaagagtggtctccaagtg 319

                                                                     
Query: 239 gcgacgtttatgttggaggaaagacggggctgtttctctgggcagtgactcttgctgg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcgacgtttatgttggaggaaagacggggctgtttctctgggcagtgactcttgctgg 377
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score =  333 bits (168), Expect = 3e-88
 Identities = 168/168 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcttggaggcgtgcgaccatcggcgaggccgtcgttggtcatagtggccaagaaggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  aagcttggaggcgtgcgaccatcggcgaggccgtcgttggtcatagtggccaagaaggcg 139

                                                                       
Query: 61  aagaaggtccagactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 aagaaggtccagactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggc 199

                                                           
Query: 121 gtcgatgcgtctggaagggtagccaaggggaagggtgtttaccagttt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gtcgatgcgtctggaagggtagccaaggggaagggtgtttaccagttt 247
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  256 bits (129), Expect = 5e-65
 Identities = 258/301 (85%)
 Strand = Plus / Plus

                                                                       
Query: 28  aggccgtcgttggtcatagtggccaagaaggcgaagaaggtccagactgcccaaccctac 87
           ||||| || ||| |||||||||||||||| || |||||| | |||||  |||| ||||| 
Sbjct: 160 aggccatctttgatcatagtggccaagaaagcaaagaagattcagacatcccagccctat 219

                                                                       
Query: 88  gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 147
           ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 220 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 279

                                                                       
Query: 148 gggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccct 207
           || |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| 
Sbjct: 280 ggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacagccca 339

                                                                       
Query: 208 atatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacgggg 267
           ||||| || |||||||| |||||| ||| ||| || || ||||||||||||||| | || 
Sbjct: 340 atatataccccagaagaatggtcttcaactggtgatgtctatgttggaggaaaggcaggt 399

                                                                       
Query: 268 ctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctac 327
            |  ||||||||||| | |||||||||||||||||  | ||||| ||| |||||||||||
Sbjct: 400 ttacttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctac 459

            
Query: 328 a 328
           |
Sbjct: 460 a 460
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  256 bits (129), Expect = 5e-65
 Identities = 258/301 (85%)
 Strand = Plus / Plus

                                                                       
Query: 28  aggccgtcgttggtcatagtggccaagaaggcgaagaaggtccagactgcccaaccctac 87
           ||||| || ||| |||||||||||||||| || |||||| | |||||  |||| ||||| 
Sbjct: 160 aggccatctttgatcatagtggccaagaaagcaaagaagattcagacatcccagccctat 219

                                                                       
Query: 88  gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 147
           ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 220 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 279

                                                                       
Query: 148 gggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccct 207
           || |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| 
Sbjct: 280 ggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacagccca 339

                                                                       
Query: 208 atatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacgggg 267
           ||||| || |||||||| |||||| ||| ||| || || ||||||||||||||| | || 
Sbjct: 340 atatataccccagaagaatggtcttcaactggtgatgtctatgttggaggaaaggcaggt 399

                                                                       
Query: 268 ctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctac 327
            |  ||||||||||| | |||||||||||||||||  | ||||| ||| |||||||||||
Sbjct: 400 ttacttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctac 459

            
Query: 328 a 328
           |
Sbjct: 460 a 460
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  248 bits (125), Expect = 1e-62
 Identities = 257/301 (85%)
 Strand = Plus / Plus

                                                                       
Query: 28  aggccgtcgttggtcatagtggccaagaaggcgaagaaggtccagactgcccaaccctac 87
           ||||| || ||| |||||||||||||||| || |||||| | |||||  |||| ||||| 
Sbjct: 161 aggccatctttgatcatagtggccaagaaagcaaagaagattcagacatcccagccctat 220

                                                                       
Query: 88  gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 147
           ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 221 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 280

                                                                       
Query: 148 gggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccct 207
           || |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| 
Sbjct: 281 ggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacagccca 340

                                                                       
Query: 208 atatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacgggg 267
           ||||| || |||||||| |||||| ||| ||| || || ||||||||||||||| | || 
Sbjct: 341 atatataccccagaagaatggtcttcaactggtgatgtctatgttggaggaaaggcaggt 400

                                                                       
Query: 268 ctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctac 327
            |  ||||||||||| | ||||||||||||| |||  | ||||| ||| |||||||||||
Sbjct: 401 ttacttctctgggcaatcactcttgctggaagtctagttggcggcgctattcttgtctac 460

            
Query: 328 a 328
           |
Sbjct: 461 a 461
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  190 bits (96), Expect = 2e-45
 Identities = 177/204 (86%)
 Strand = Plus / Plus

                                                                       
Query: 144 caaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
           ||||||||| || || ||||||||||||  |||||||||||| ||||||||||| |||||
Sbjct: 198 caaggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 257

                                                                       
Query: 204 ccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagac 263
           ||| ||||| |  ||||| || ||||| |||||||| || ||||||  ||||||||||||
Sbjct: 258 cccaatatataacccagaggaatggtcaccaagtggtgatgtttatactggaggaaagac 317

                                                                       
Query: 264 ggggctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgt 323
            ||| |||| ||||||||||| |||||| |||||||||||||||  ||||||||||||||
Sbjct: 318 agggttgttgctctgggcagtcactctttctggaattctgctggctggtgctcttcttgt 377

                                   
Query: 324 ctacagtactagcgccttggcttc 347
           ||||| |||||| |||||||||||
Sbjct: 378 ctacaatactagtgccttggcttc 401
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score =  121 bits (61), Expect = 2e-24
 Identities = 154/185 (83%)
 Strand = Plus / Plus

                                                                       
Query: 145 aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 204
           ||||| |||||||| ||||| ||||  ||||| ||||| |||||||||||||| ||||||
Sbjct: 290 aagggaaagggtgtctaccaatttgtggacaaatatggtgcaaatgttgatggctacagc 349

                                                                       
Query: 205 cctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggaggaaagacg 264
           || || ||| ||||||| || |||||||| ||||| || ||||||||||||||||  || 
Sbjct: 350 ccgatctactcaccagacgaatggtctcctagtggtgatgtttatgttggaggaaccact 409

                                                                       
Query: 265 gggctgtttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtc 324
           || ||  || |||||||| | |||||||||||| |||||   || |||||||||||||| 
Sbjct: 410 ggtctcattgtctgggcaatcactcttgctggacttctgggtggaggtgctcttcttgtg 469

                
Query: 325 tacag 329
           |||||
Sbjct: 470 tacag 474
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 7e-24
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                           
Query: 255     aggaaagacggggctgtttctctgggcagtgactcttgctggaattctgctgggcggtgc 314
               ||||||||| ||| |||| ||||||||||| |||||| |||||||||||||||  |||||
Sbjct: 2490023 aggaaagacagggttgttgctctgggcagtcactctttctggaattctgctggctggtgc 2490082

                                                       
Query: 315     tcttcttgtctacagtactagcgccttggcttcctgaagc 354
               |||||||||||||| |||||| ||||||||||| ||||||
Sbjct: 2490083 tcttcttgtctacaatactagtgccttggcttcttgaagc 2490122



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                         
Query: 146     aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
               |||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 2487079 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 2487136



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                           
Query: 88      gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 147
               ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 2486935 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 2486994

                
Query: 148     g 148
               |
Sbjct: 2486995 g 2486995



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                         
Query: 146     aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
               ||||||| || || ||||||||||||  |||||||||||| ||||||||||| |||||
Sbjct: 2489696 aggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 2489753



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                        
Query: 272     ttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctaca 328
               ||||||||||| | |||||||||||||||||  | ||||| ||| ||||||||||||
Sbjct: 2487572 ttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctaca 2487628



 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                          
Query: 199     tacagccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
               |||||||| ||||| || |||||||| |||||| ||| ||| || || |||||||||||
Sbjct: 2487375 tacagcccaatatataccccagaagaatggtcttcaactggtgatgtctatgttggagg 2487433
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  119 bits (60), Expect = 7e-24
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                         
Query: 255   aggaaagacggggctgtttctctgggcagtgactcttgctggaattctgctgggcggtgc 314
             ||||||||| ||| |||| ||||||||||| |||||| |||||||||||||||  |||||
Sbjct: 55003 aggaaagacagggttgttgctctgggcagtcactctttctggaattctgctggctggtgc 55062

                                                     
Query: 315   tcttcttgtctacagtactagcgccttggcttcctgaagc 354
             |||||||||||||| |||||| ||||||||||| ||||||
Sbjct: 55063 tcttcttgtctacaatactagtgccttggcttcttgaagc 55102



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 146   aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
             |||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 52059 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 52116



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 88    gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 147
             ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 51915 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 51974

              
Query: 148   g 148
             |
Sbjct: 51975 g 51975



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 146   aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
             ||||||| || || ||||||||||||  |||||||||||| ||||||||||| |||||
Sbjct: 54676 aggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 54733



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 272   ttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctaca 328
             ||||||||||| | |||||||||||||||||  | ||||| ||| ||||||||||||
Sbjct: 52552 ttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctaca 52608



 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 199   tacagccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
             |||||||| ||||| || |||||||| |||||| ||| ||| || || |||||||||||
Sbjct: 52355 tacagcccaatatataccccagaagaatggtcttcaactggtgatgtctatgttggagg 52413
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                       
Query: 145 aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 204
           ||||| |||||||||||||| || |  ||||| |||||||||||||||||||| ||||||
Sbjct: 230 aagggaaagggtgtttaccaattcgttgacaaatatggagcaaatgttgatggatacagc 289

                                                                
Query: 205 cctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
           || || ||||   |||| || |||||||||||||| || || |||||||||||
Sbjct: 290 cccatctacaacacagatgactggtctccaagtggtgatgtctatgttggagg 342
to top
>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Plus

                                                                       
Query: 143 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 202
           ||||||| |||||||||||||| || |  ||||| |||||||||||||||||||| ||||
Sbjct: 83  ccaagggaaagggtgtttaccaattcgttgacaaatatggagcaaatgttgatggataca 142

                                                                  
Query: 203 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
           |||| || ||||   |||| || ||||||||||| || || || |||||||||||
Sbjct: 143 gccccatctacaacacagatgactggtctccaagcggtgatgtctatgttggagg 197
to top
>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                       
Query: 143 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 202
           ||||||| |||||||||||||| || |  ||||| |||||||||||||||||||| ||||
Sbjct: 19  ccaagggaaagggtgtttaccaattngttgacaaatatggagcaaatgttgatggataca 78

                                                                  
Query: 203 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
           |||| || ||||   |||| || |||||| |||| || || || |||||||||||
Sbjct: 79  gccccatctacaacacagatgactggtctncaagcggtgatgtntatgttggagg 133
to top
>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 146   aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
             |||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 60826 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 60883



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 88    gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 147
             ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 60682 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 60741

              
Query: 148   g 148
             |
Sbjct: 60742 g 60742



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 272   ttctctgggcagtgactcttgctggaattctgctgggcggtgctcttcttgtctaca 328
             ||||||||||| | |||||||||||||||||  | ||||| ||| ||||||||||||
Sbjct: 61319 ttctctgggcaatcactcttgctggaattctagttggcggcgctattcttgtctaca 61375



 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 199   tacagccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
             |||||||| ||||| || |||||||| |||||| ||| ||| || || |||||||||||
Sbjct: 61122 tacagcccaatatataccccagaagaatggtcttcaactggtgatgtctatgttggagg 61180
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                       
Query: 143 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 202
           ||||||| |||||||| ||||| | ||  ||||| |||||||| ||||||||||| ||||
Sbjct: 209 ccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca 268

                                                                  
Query: 203 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
           | || || ||||   |||| ||||||||||||||||| || || |||||||||||
Sbjct: 269 gtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggagg 323
to top
>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete
           cds
          Length = 584

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 145 aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 204
           ||||| |||||||||||||||||||  ||||| ||||| || ||||||||||| ||||| 
Sbjct: 212 aagggaaagggtgtttaccagtttgtggacaaatatggtgctaatgttgatggatacagt 271

                
Query: 205 cctat 209
           |||||
Sbjct: 272 cctat 276
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                       
Query: 143 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 202
           ||||||| |||||||| ||||| | ||  ||||| |||||||| ||||||||||| ||||
Sbjct: 186 ccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca 245

                                                                  
Query: 203 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
           | || || ||||   | || || |||||||||||||| || || |||||||||||
Sbjct: 246 gtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggagg 300
to top
>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II,
           complete cds
          Length = 590

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 75/87 (86%), Gaps = 2/87 (2%)
 Strand = Plus / Plus

                                                                       
Query: 118 ggcgtcgatgcgtctggaagggtagccaagggg-aagggtgtttaccagtttgccgacaa 176
           ||||| ||| |||||||||||  |||||| ||| |||||||||||||| ||||  |||||
Sbjct: 207 ggcgttgattcgtctggaagga-agccaacgggcaagggtgtttaccaatttgttgacaa 265

                                      
Query: 177 gtatggagcaaatgttgatgggtacag 203
           |||||| || ||||||||||| |||||
Sbjct: 266 gtatggtgccaatgttgatggttacag 292
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>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 93/115 (80%)
 Strand = Plus / Plus

                                                                       
Query: 143 ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 202
           ||||||| |||||||| ||||| | ||  ||||| ||||| || ||||||||||| ||||
Sbjct: 209 ccaagggaaagggtgtgtaccaatatgttgacaaatatggggctaatgttgatggataca 268

                                                                  
Query: 203 gccctatatacacaccagaagagtggtctccaagtggcgacgtttatgttggagg 257
           | || || ||||   | || || |||||||||||||| || || |||||||||||
Sbjct: 269 gtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggagg 323
to top
>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403,
             complete sequence
          Length = 97807

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 146   aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
             |||| |||||||||||||||| ||  |||||||| || || ||||||||||| |||||
Sbjct: 84296 agggaaagggtgtttaccagtatgtggacaagtacggtgctaatgttgatggatacag 84239
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>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b,
             complete sequence
          Length = 28275

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 146   aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
             |||| |||||||||||||||| ||  |||||||| || || ||||||||||| |||||
Sbjct: 14668 agggaaagggtgtttaccagtatgtggacaagtacggtgctaatgttgatggatacag 14725
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>emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS1 gene
          Length = 3699

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 218  cagaagagtggtctccaagtggcgacgtttatgttggagg 257
            |||| ||||||||||||||||| || || |||||||||||
Sbjct: 3003 cagatgagtggtctccaagtggtgatgtctatgttggagg 3042



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                      
Query: 146  aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 203
            |||| |||||||| ||||| | ||  ||||| |||||||| ||||||||||| |||||
Sbjct: 2835 agggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacag 2892
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 15     gcgaccatcggcgaggccgtcg 36
              ||||||||||||||||||||||
Sbjct: 577556 gcgaccatcggcgaggccgtcg 577535
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>dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complete cds
          Length = 910

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 145 aaggggaagggtgtttaccagtttgccgacaagtatgg 182
           |||||||||||||| ||||| ||||  |||||||||||
Sbjct: 318 aaggggaagggtgtctaccaatttgttgacaagtatgg 355
to top
>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 293 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 352

            
Query: 214 a 214
           |
Sbjct: 353 a 353
to top
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 47      tggccaagaaggcgaagaagg 67
               |||||||||||||||||||||
Sbjct: 2184178 tggccaagaaggcgaagaagg 2184158
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 47      tggccaagaaggcgaagaagg 67
               |||||||||||||||||||||
Sbjct: 2523534 tggccaagaaggcgaagaagg 2523514
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>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 226 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 285

            
Query: 214 a 214
           |
Sbjct: 286 a 286
to top
>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 276 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 335

            
Query: 214 a 214
           |
Sbjct: 336 a 336
to top
>gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-related kinase (PRK2) mRNA,
            partial cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 232  ccaagtggcgacgtttatgtt 252
            |||||||||||||||||||||
Sbjct: 1485 ccaagtggcgacgtttatgtt 1465
to top
>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318

            
Query: 214 a 214
           |
Sbjct: 319 a 319
to top
>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318

            
Query: 214 a 214
           |
Sbjct: 319 a 319
to top
>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 255 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 314

            
Query: 214 a 214
           |
Sbjct: 315 a 315
to top
>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318

            
Query: 214 a 214
           |
Sbjct: 319 a 319
to top
>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 579

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 258 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 317

            
Query: 214 a 214
           |
Sbjct: 318 a 318
to top
>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 261 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 320

            
Query: 214 a 214
           |
Sbjct: 321 a 321
to top
>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 293 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 352

            
Query: 214 a 214
           |
Sbjct: 353 a 353
to top
>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                        
Query: 154  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 213
            ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 968  ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 1027

             
Query: 214  a 214
            |
Sbjct: 1028 a 1028
to top
>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II
           10kDa polypeptide mRNA, complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 166 tttgccgacaagtatggagcaaatgttgatgggtacagccctatataca 214
           |||| |||||||||||| || || |||||||| ||||| ||||| ||||
Sbjct: 253 tttgtcgacaagtatggtgcgaacgttgatggatacagtcctatctaca 301
to top
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     gtatggagcaaatgttgatg 196
               ||||||||||||||||||||
Sbjct: 1176145 gtatggagcaaatgttgatg 1176164
to top
>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence
          Length = 205300

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    atatacacaccagaagagtg 227
              ||||||||||||||||||||
Sbjct: 143573 atatacacaccagaagagtg 143554
to top
>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ctcttcttgtctacagtact 333
            ||||||||||||||||||||
Sbjct: 4550 ctcttcttgtctacagtact 4569
to top
>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064E13, complete sequence
          Length = 150158

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tggcgttcaaggaaggcgtc 123
             ||||||||||||||||||||
Sbjct: 82005 tggcgttcaaggaaggcgtc 82024
to top
>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   gtagccaaggggaagggtgt 158
             ||||||||||||||||||||
Sbjct: 35644 gtagccaaggggaagggtgt 35663
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22,
              complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    tggcgttcaaggaaggcgtc 123
              ||||||||||||||||||||
Sbjct: 117735 tggcgttcaaggaaggcgtc 117754
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   tcttgctggaattctgctgg 307
             ||||||||||||||||||||
Sbjct: 25880 tcttgctggaattctgctgg 25861
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  tcttgctggaattctgctgg 307
            ||||||||||||||||||||
Sbjct: 7089 tcttgctggaattctgctgg 7108
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   gccaaggggaagggtgttta 161
             ||||||||||||||||||||
Sbjct: 65296 gccaaggggaagggtgttta 65315
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     ttcaaggaaggcgtcgatgc 128
               ||||||||||||||||||||
Sbjct: 2504769 ttcaaggaaggcgtcgatgc 2504750
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>dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030046K16
           product:unclassifiable, full insert sequence
          Length = 2480

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 atatacacaccagaagagtg 227
           ||||||||||||||||||||
Sbjct: 259 atatacacaccagaagagtg 278
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 104      tggcgttcaaggaaggcgtc 123
                ||||||||||||||||||||
Sbjct: 20071070 tggcgttcaaggaaggcgtc 20071089



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 104      tggcgttcaaggaaggcgtc 123
                ||||||||||||||||||||
Sbjct: 19940668 tggcgttcaaggaaggcgtc 19940687
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>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 aagctatgcaccaaacgatg 390
           ||||||||||||||||||||
Sbjct: 442 aagctatgcaccaaacgatg 461
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>dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full
           insert sequence
          Length = 3198

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 tggcgttcaaggaaggcgtc 123
           ||||||||||||||||||||
Sbjct: 221 tggcgttcaaggaaggcgtc 240
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>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    ctcttcttgtctacagtact 333
              ||||||||||||||||||||
Sbjct: 166412 ctcttcttgtctacagtact 166431
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>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 aagctatgcaccaaacgatg 390
           ||||||||||||||||||||
Sbjct: 442 aagctatgcaccaaacgatg 461
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 104      tggcgttcaaggaaggcgtc 123
                ||||||||||||||||||||
Sbjct: 20357746 tggcgttcaaggaaggcgtc 20357765



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 104      tggcgttcaaggaaggcgtc 123
                ||||||||||||||||||||
Sbjct: 20225647 tggcgttcaaggaaggcgtc 20225666


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,028,184
Number of Sequences: 3902068
Number of extensions: 3028184
Number of successful extensions: 94626
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94294
Number of HSP's gapped (non-prelim): 324
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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