ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2f17 |
|---|---|
| Clone Library Name | barley_pub |
>GLSN_MEDSA (Q03460) Glutamate synthase [NADH], chloroplast precursor (EC| 1.4.1.14) (NADH-GOGAT) Length = 2194 Score = 246 bits (627), Expect = 1e-65 Identities = 110/134 (82%), Positives = 123/134 (91%) Frame = +1 Query: 4 VTYEREGVSYRDPNERVKDWNEVAIESVPGPLISTQSARCMDCGTPYCHQESSGAGCPLG 183 V YEREGV YRDPN R+ DWNEV +E+ PGPL+ TQSARCMDCGTP+CHQE+SG CPLG Sbjct: 1685 VAYEREGVQYRDPNVRLNDWNEVMMETKPGPLLKTQSARCMDCGTPFCHQENSG--CPLG 1742 Query: 184 NKIPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGINQNPVSIKSIEC 363 NKIPEFNELV+QNRW+EAL+RLLETNNFPEFTGRVCPAPCEGSCVLGI +NPVSIK+IEC Sbjct: 1743 NKIPEFNELVYQNRWQEALERLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKNIEC 1802 Query: 364 SIIDKGFEEGWMVP 405 +IIDK FEEGWM+P Sbjct: 1803 AIIDKAFEEGWMIP 1816
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 162 bits (409), Expect = 2e-40 Identities = 75/132 (56%), Positives = 97/132 (73%) Frame = +1 Query: 10 YEREGVSYRDPNERVKDWNEVAIESVPGPLISTQSARCMDCGTPYCHQESSGAGCPLGNK 189 Y+R YR+P +R DW E+++ L Q+ARCMDCGTP+C S GCP+ NK Sbjct: 1620 YQRRSEHYRNPLKRTNDWKELSVRLREDEL-RVQTARCMDCGTPFCQ---SDYGCPISNK 1675 Query: 190 IPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGINQNPVSIKSIECSI 369 I +N+LV + +W+EAL +LL TNNFPEFTGRVCPAPCEG+C LGI ++PV IKS+E +I Sbjct: 1676 IFTWNDLVFKQQWKEALTQLLLTNNFPEFTGRVCPAPCEGACTLGIIESPVGIKSVERAI 1735 Query: 370 IDKGFEEGWMVP 405 IDK +EEGW+VP Sbjct: 1736 IDKAWEEGWIVP 1747
>GLT1_YEAST (Q12680) Glutamate synthase [NADPH] precursor (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2144 Score = 161 bits (408), Expect = 3e-40 Identities = 75/132 (56%), Positives = 95/132 (71%) Frame = +1 Query: 10 YEREGVSYRDPNERVKDWNEVAIESVPGPLISTQSARCMDCGTPYCHQESSGAGCPLGNK 189 ++R ++RDP RV DW E + Q+ARCMDCGTP+C S GCPL N Sbjct: 1646 HKRRHETHRDPRTRVNDWKEFT-NPITKKDAKYQTARCMDCGTPFC---LSDTGCPLSNI 1701 Query: 190 IPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGINQNPVSIKSIECSI 369 IP+FNEL+ +N+W+ ALD+LLETNNFPEFTGRVCPAPCEG+C LGI ++P+ IKS+E I Sbjct: 1702 IPKFNELLFKNQWKLALDKLLETNNFPEFTGRVCPAPCEGACTLGIIEDPLGIKSVERII 1761 Query: 370 IDKGFEEGWMVP 405 ID F+EGW+ P Sbjct: 1762 IDNAFKEGWIKP 1773
>GLTB_BACSU (O34399) Glutamate synthase [NADPH] small chain (EC 1.4.1.13)| (NADPH-GOGAT) Length = 493 Score = 159 bits (403), Expect = 1e-39 Identities = 78/135 (57%), Positives = 98/135 (72%), Gaps = 4/135 (2%) Frame = +1 Query: 13 EREGVSYRDPNERVKDWNEVAIESVPGPLISTQSARCMDCGTPYCH--QESSG--AGCPL 180 +RE + RDP R+KDW E + Q ARCMDCGTP+C + +G +GCP+ Sbjct: 11 KREKPAERDPLTRLKDWKEYSAP-FSEEASKRQGARCMDCGTPFCQIGADINGFTSGCPI 69 Query: 181 GNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGINQNPVSIKSIE 360 N IPE+N+LV++ RW+EAL+RLL+TNNFPEFTGRVCPAPCEGSC L I+ VSIK+IE Sbjct: 70 YNLIPEWNDLVYRGRWKEALERLLKTNNFPEFTGRVCPAPCEGSCTLAISDPAVSIKNIE 129 Query: 361 CSIIDKGFEEGWMVP 405 +IIDKGFE GW+ P Sbjct: 130 RTIIDKGFENGWIQP 144
>GLTD_ECOLI (P09832) Glutamate synthase [NADPH] small chain (EC 1.4.1.13)| (Glutamate synthase beta subunit) (NADPH-GOGAT) (GLTS beta chain) Length = 471 Score = 80.9 bits (198), Expect = 7e-16 Identities = 43/98 (43%), Positives = 55/98 (56%), Gaps = 2/98 (2%) Frame = +1 Query: 109 QSARCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRV 288 Q+ RC+ CG PYC + CP+ N IP + +L ++ R EA + +TN PE GRV Sbjct: 42 QADRCLSCGNPYCEWK-----CPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRV 96 Query: 289 CPAP--CEGSCVLGINQNPVSIKSIECSIIDKGFEEGW 396 CP CEGSC L V+I +IE I DK FE GW Sbjct: 97 CPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGW 134
>GLTD_AZOBR (Q05756) Glutamate synthase [NADPH] small chain (EC 1.4.1.13)| (Glutamate synthase beta subunit) (NADPH-GOGAT) (GLTS beta chain) Length = 481 Score = 79.3 bits (194), Expect = 2e-15 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Frame = +1 Query: 109 QSARCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRV 288 Q+ RC CG P+C CP+ N IP++ +L + R EA + TNNFPE GR+ Sbjct: 43 QANRCSQCGVPFCQVH-----CPVSNNIPDWLKLTSEGRLEEAYEVSQATNNFPEICGRI 97 Query: 289 CPAP--CEGSCVL-GINQNPVSIKSIECSIIDKGFEEGWMVP 405 CP CEG+CV+ V+I S+E I D +++GW+ P Sbjct: 98 CPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKP 139
>AEGA_ECOLI (P37127) Protein aegA| Length = 659 Score = 65.9 bits (159), Expect = 2e-11 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Frame = +1 Query: 109 QSARCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRV 288 +++RC+ CG + + CPL N IP++ ELV A++ +TN PE TGRV Sbjct: 223 EASRCLKCGEHSVCEWT----CPLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITGRV 278 Query: 289 CPAP--CEGSCVLGINQNPVSIKSIECSIIDKGFEEGW 396 CP CEG+C + V+I +IE I D+ +GW Sbjct: 279 CPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGW 316
>YGFT_ECOLI (Q46820) Hypothetical protein ygfT| Length = 639 Score = 63.5 bits (153), Expect = 1e-10 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Frame = +1 Query: 16 REGVSYRDPNERVKDWNEVAIESVPGPLISTQSARCMDCGTPYCHQESSGAGCPLGNKIP 195 R+G +ER + E+ P + +S RC+ C + + CPL N IP Sbjct: 176 RKGADKISASERKTHFGEIYCGLDPQQA-TYESDRCVYCA----EKANCNWHCPLHNAIP 230 Query: 196 EFNELVHQNRWREALDRLLETNNFPEFTGRVCPAP--CEGSCVLGINQNPVSIKSIECSI 369 ++ LV + + EA + +T++ PE GRVCP CEG+C L + VSI ++E I Sbjct: 231 DYIRLVQEGKIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYI 290 Query: 370 IDKGFEEGW 396 D GW Sbjct: 291 TDTALAMGW 299
>YGFK_ECOLI (Q46811) Hypothetical protein ygfK| Length = 1032 Score = 48.5 bits (114), Expect = 4e-06 Identities = 20/82 (24%), Positives = 44/82 (53%) Frame = +1 Query: 145 CHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLG 324 C+ C + IPE+ L+ ++R+ +AL+ + + N P TG +C C+ +C Sbjct: 455 CYVAPCVTACAIKQDIPEYIRLLGEHRYADALELIYQRNALPAITGHICDHQCQYNCTRL 514 Query: 325 INQNPVSIKSIECSIIDKGFEE 390 + ++I+ ++ ++KG++E Sbjct: 515 DYDSALNIRELKKVALEKGWDE 536
>YGFK_ECO57 (Q8XD75) Hypothetical protein ygfK| Length = 1032 Score = 48.5 bits (114), Expect = 4e-06 Identities = 20/82 (24%), Positives = 44/82 (53%) Frame = +1 Query: 145 CHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLG 324 C+ C + IPE+ L+ ++R+ +AL+ + + N P TG +C C+ +C Sbjct: 455 CYVAPCVTACAIKQDIPEYIRLLGEHRYADALELIYQRNALPAITGHICDHQCQYNCTRL 514 Query: 325 INQNPVSIKSIECSIIDKGFEE 390 + ++I+ ++ ++KG++E Sbjct: 515 DYDSALNIRELKKVALEKGWDE 536
>YEIT_SALTY (Q8ZNL8) Hypothetical oxidoreductase yeiT| Length = 413 Score = 35.8 bits (81), Expect = 0.025 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%) Frame = +1 Query: 79 ESVPG--PLISTQSA-RCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRL 249 E PG PL++ + A RC+ CH CP +F ++ ++ A + + Sbjct: 9 ELTPGFTPLLAIKEASRCL-----LCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETI 63 Query: 250 LETNNFPEFTGRVCPAP--CEGSCVLGINQNPVSIKSIECSIID 375 E N RVCP C+ C P+ I ++ I D Sbjct: 64 RENNALGAVCARVCPTEKLCQRGCTRSGIDKPIDIARLQRFITD 107
>YEIT_SALTI (Q8Z5A6) Hypothetical oxidoreductase yeiT| Length = 413 Score = 35.8 bits (81), Expect = 0.025 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%) Frame = +1 Query: 79 ESVPG--PLISTQSA-RCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRL 249 E PG PL++ + A RC+ CH CP +F ++ ++ A + + Sbjct: 9 ELTPGFTPLLAIKEASRCL-----LCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETI 63 Query: 250 LETNNFPEFTGRVCPAP--CEGSCVLGINQNPVSIKSIECSIID 375 E N RVCP C+ C P+ I ++ I D Sbjct: 64 RENNALGAVCARVCPTEKLCQRGCTRSGIDKPIDIARLQRFITD 107
>YEIT_ECO57 (Q8X645) Hypothetical oxidoreductase yeiT| Length = 412 Score = 33.9 bits (76), Expect = 0.095 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 3/97 (3%) Frame = +1 Query: 94 PLISTQSA-RCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFP 270 PL++ + A RC+ CH CP +F ++ ++ A + + E N Sbjct: 16 PLLAIKEASRCL-----LCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALG 70 Query: 271 EFTGRVCPAP--CEGSCVLGINQNPVSIKSIECSIID 375 RVCP C+ C P+ I ++ + D Sbjct: 71 AVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQRFVTD 107
>YEIT_ECOLI (P76440) Hypothetical oxidoreductase yeiT| Length = 412 Score = 33.1 bits (74), Expect = 0.16 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Frame = +1 Query: 109 QSARCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPEFTGRV 288 +++RC+ CH CP +F ++ ++ A + + E N RV Sbjct: 22 EASRCL-----LCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARV 76 Query: 289 CPAP--CEGSCVLGINQNPVSIKSIECSIID 375 CP C+ C P+ I ++ + D Sbjct: 77 CPTEKLCQSGCTRAGVDAPIDIGRLQRFVTD 107
>FIBA_BOVIN (P02672) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide| A] Length = 615 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +1 Query: 85 VPGP-LISTQSARCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQN 222 V GP L+ Q + C + G P+C E CP G ++ + V Q+ Sbjct: 37 VRGPRLVERQQSACKETGWPFCSDEDWNTKCPSGCRMKGLIDEVDQD 83
>DYH1B_CHLRE (Q9MBF8) Dynein-1-beta heavy chain, flagellar inner arm I1 complex| (1-beta DHC) (Dynein-1, subspecies f) Length = 4513 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -3 Query: 395 HPSSKPLSIIEHSMLLIDTGF*LMPRTQEPSQGAGHTR 282 HP+++ +IE S +L+D+ L PRT+ + GAG R Sbjct: 4200 HPNAEISYLIEDSKVLLDSLLSLQPRTEGAAGGAGTRR 4237
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +1 Query: 52 VKDWNEVAIESVPGPLISTQSARCMDCGTPYCHQESSG---AGCPLGNKIPEFNE 207 V+ + V+ PGP ST+ A+ +D P Q SSG AG P + E+ + Sbjct: 768 VRGEDAVSEAKSPGPFFSTRKAKSLDLHVPSLKQRSSGSPAAGDPESSLCVEYEQ 822
>ABGB_ECOLI (P76052) Aminobenzoyl-glutamate utilization protein B| Length = 481 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -2 Query: 240 QCFTPSILVN*FIELWDLISKGTTST*AFLMTVRSATIHATS 115 QCF+P V + W L+S+G TS M + + T+ AT+ Sbjct: 400 QCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATT 441
>LGRB_BREPA (Q70LM6) Linear gramicidin synthetase subunit B [Includes:| ATP-dependent alanine adenylase (AlaA) (Alanine activase); ATP-dependent D-leucine adenylase (D-LeuA) (D-leucine activase); Leucine racemase [ATP-hydrolyzing] (EC 5.1.1.-); ATP-depende Length = 5162 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = +1 Query: 55 KDWNEVAIESVPGPLISTQSARCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWRE 234 +DW E+A ES P I T + + Y S G P G +I E L++ W + Sbjct: 1643 RDWQEIAAESTAAPAIKTNADQ-----LAYVIYTSGSTGTPKGVEI-EHGSLLNLVNWHQ 1696
>DP2L_HALSA (Q9HMX8) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| [Contains: Hsp-NRC1 polC intein (Hsp-NRC1 pol2 intein)] Length = 1370 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Frame = +1 Query: 1 EVTYEREGVSYRDPNERVKDWNEVAIESVPGPL--ISTQSARCMDCGTPYCHQESSGAGC 174 E+ + V+ D ERV +++ + + G L S Q RC+DCG Y SG Sbjct: 1249 ELARKLRSVAETDVAERVIEYH--FLPDLIGNLRAFSRQETRCLDCGEKYRRMPLSGDCR 1306 Query: 175 PLGNKIPEFNELVHQ---NRWREALDRLLETNNFPEFT 279 G ++ N VH+ N++ + R+ + E+T Sbjct: 1307 ECGGRV---NLTVHEGSVNKYMDTAMRVATEYDCREYT 1341
>SYM_THEVO (Q979B7) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 543 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Frame = +1 Query: 118 RCMDCGTPYCHQESSGAGCPLGNKIPEFNELVH----QNRWREALDRLLETNNF 267 +C +CG QE C L + PEF E H + + E L+ L+T F Sbjct: 157 QCDNCGRTLDPQELINPVCILSGETPEFRETEHFFLRLDLFEERLEEWLKTKTF 210
>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated homolog) (AtATM) Length = 3856 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = +1 Query: 67 EVAIESVPGPLISTQSARCMDCGTPYCHQESSGAGCPLGNKIPEFNELVHQNRWR 231 EV + G + S Q CM YC +S GC PEF EL ++ WR Sbjct: 2857 EVQRQPFKGLIRSLQQTGCMHVLDLYCRGLTSREGC--FQYDPEFIELQYEAAWR 2909
>LAML2_CAEEL (Q21313) Laminin-like protein K08C7.3 precursor| Length = 3672 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = +1 Query: 112 SARCMDCGTPYCHQESSGAGCPL 180 S C CG+ YC +S G C + Sbjct: 1989 SCECSQCGSQYCDNKSGGCECKI 2011
>NAPB_PARPN (Q56351) Diheme cytochrome c napB precursor (Cytochrome c-552)| (Cytochrome c552) Length = 161 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +1 Query: 37 DPNERVKDWNE---VAIESVPGPLISTQSARCMDCGTPYCHQESSGAGCPL 180 D R++++ E V S+ G ++ + RCMDC P Q + G+G P+ Sbjct: 62 DDVRRMRNYPEQPPVIPHSIDGYQLTVNTNRCMDCHKP---QFTEGSGAPM 109
>NPC1_CAEEL (Q19127) Niemann-Pick C1 protein homolog 1 precursor| Length = 1383 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/42 (26%), Positives = 20/42 (47%) Frame = -1 Query: 190 SYFQGDNQHLSFPDDSKECHNPCNEQTVYLSVALELTQWQPH 65 +YFQG+ +HL + +E + ++ Y S +W H Sbjct: 481 NYFQGNKEHLDMKSNKEETVSEDDDAFDYFSSEATTDEWMNH 522
>KRHB6_MOUSE (P97861) Keratin, type II cuticular Hb6 (Hair keratin, type II Hb6)| Length = 486 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 202 NELVHQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLG 324 N V +R L + P RVC APC G+ V+G Sbjct: 425 NVCVSSSRGGVVCGDLCVSGTAPAVNTRVCSAPCSGNVVVG 465 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.137 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,938,032 Number of Sequences: 219361 Number of extensions: 1237602 Number of successful extensions: 3066 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2940 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3053 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
