ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal2f13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_470141.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.003
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.003
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.003
4gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 46 0.003
5dbj|AK102784.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.003
6dbj|AK069740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.003
7gb|AC158645.6| Mus musculus 6 BAC RP23-435I16 (Roswell Park Canc... 36 3.3
8gb|AC158679.8| Mus musculus 6 BAC RP23-345O17 (Roswell Park Canc... 36 3.3

>ref|XM_470141.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2522

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 8   aaccccaggnctttgaggaggctcag 33
           ||||||||| ||||||||||||||||
Sbjct: 882 aaccccagggctttgaggaggctcag 907



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 8        aaccccaggnctttgaggaggctcag 33
                ||||||||| ||||||||||||||||
Sbjct: 34145414 aaccccagggctttgaggaggctcag 34145439



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 8        aaccccaggnctttgaggaggctcag 33
                ||||||||| ||||||||||||||||
Sbjct: 34235886 aaccccagggctttgaggaggctcag 34235911



to top

>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 8      aaccccaggnctttgaggaggctcag 33
              ||||||||| ||||||||||||||||
Sbjct: 109226 aaccccagggctttgaggaggctcag 109251



to top

>dbj|AK102784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K19, full
           insert sequence
          Length = 2370

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 8   aaccccaggnctttgaggaggctcag 33
           ||||||||| ||||||||||||||||
Sbjct: 915 aaccccagggctttgaggaggctcag 940



to top

>dbj|AK069740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030D03, full
           insert sequence
          Length = 2282

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 8   aaccccaggnctttgaggaggctcag 33
           ||||||||| ||||||||||||||||
Sbjct: 917 aaccccagggctttgaggaggctcag 942



to top

>gb|AC158645.6| Mus musculus 6 BAC RP23-435I16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 177739

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 13    caggnctttgaggaggctcag 33
             |||| ||||||||||||||||
Sbjct: 11146 cagggctttgaggaggctcag 11126



to top

>gb|AC158679.8| Mus musculus 6 BAC RP23-345O17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 192748

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 13    caggnctttgaggaggctcag 33
             |||| ||||||||||||||||
Sbjct: 25235 cagggctttgaggaggctcag 25255


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 137,495
Number of Sequences: 3902068
Number of extensions: 137495
Number of successful extensions: 33793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33774
Number of HSP's gapped (non-prelim): 19
length of query: 35
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 15
effective length of database: 17,155,003,908
effective search space: 257325058620
effective search space used: 257325058620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top