>LC7L2_MOUSE (Q7TNC4) Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog)|
          Length = 392

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
 Frame = +3

Query: 96  ERCLKVYKEKLEGLGLPVPVE---KLQQIHEVANDEAKMLFDKQHFGKHHAVQSVLKLED 266
           +R  +V K++L      +  E   K +++HE+  +  K+L   +  G    V+   K+ D
Sbjct: 98  DRRTEVSKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMD 157

Query: 267 EIKK----------VYKSFLLANEYQSSKL--CE 332
           E++K          VY++ + A+ +Q  KL  CE
Sbjct: 158 EVEKARAKKREAEEVYRNSMPASSFQQQKLRVCE 191

>LC7L2_HUMAN (Q9Y383) Putative RNA-binding protein Luc7-like 2|
          Length = 392

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
 Frame = +3

Query: 96  ERCLKVYKEKLEGLGLPVPVE---KLQQIHEVANDEAKMLFDKQHFGKHHAVQSVLKLED 266
           +R  +V K++L      +  E   K +++HE+  +  K+L   +  G    V+   K+ D
Sbjct: 98  DRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMD 157

Query: 267 EIKK----------VYKSFLLANEYQSSKL--CE 332
           E++K          VY++ + A+ +Q  KL  CE
Sbjct: 158 EVEKARAKKREAEEVYRNSMPASSFQQQKLRVCE 191

>YTZC_BACSU (O32073) Hypothetical protein ytzC|
          Length = 90

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 13/62 (20%), Positives = 33/62 (53%)
 Frame = +3

Query: 153 VEKLQQIHEVANDEAKMLFDKQHFGKHHAVQSVLKLEDEIKKVYKSFLLANEYQSSKLCE 332
           +++  Q ++ A ++ K+   ++H+       + ++LED +  + K +L +N+ Q  +L  
Sbjct: 11  LQQCMQAYDYAEEQLKIASKQEHYNDQEYSDAQMQLEDAVNALNKLWLSSNDQQREQLYR 70

Query: 333 AR 338
            R
Sbjct: 71  MR 72

>T2FA_HUMAN (P35269) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription initiation factor
           RAP74) (General transcription factor IIF polypeptide 1
           74 kDa subunit protein)
          Length = 517

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 105 LKVYKEKLEGLGLPVPVEKLQQIHEVANDEAKMLFDKQHF 224
           LK ++ K  GL     V  L QI +  N E KM+ DK HF
Sbjct: 474 LKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHF 513

>SYA_MESFL (Q6F0K3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 892

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +3

Query: 84  KAILER---CLKVYKEKLEGLGLPVPVEKLQQIHEVANDEAKMLFDKQHFGKHHAVQSVL 254
           K ILE+    LK+Y+ K+E L     +E+ +    + ND+     ++Q  G +  ++ + 
Sbjct: 770 KLILEKLSAALKIYERKIEDLLTSKKLEQFKAFEPITNDKGVGTIEQQVNGLN--IKDMK 827

Query: 255 KLEDEIKKVYKSFLL 299
            L DE K  ++  ++
Sbjct: 828 NLVDEYKNKFEKLII 842

>POLG_HRV1A (P23008) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D)] (Fragments)
          Length = 832

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 246 TVQHDAYQSAVYQRAFWLHHLPPHEFAAVSPPVQVDLS 133
           T+  D   +AV     W H+L P +  A++ P Q D S
Sbjct: 66  TISSDDVANAVVGYGVWPHYLTPQDATAINKPTQPDTS 103

>C_PI3H4 (P06165) Protein C (VP18 protein)|
          Length = 199

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +3

Query: 225 GKHHAVQSVLKLEDEIKKVYKSFLLANEYQSSKLCEARFSECEDQMDHLQVLKLPSMAKF 404
           G H  VQ   K+E  I+K+Y+  L     +++++ E R    E+ ++  Q+LK+    + 
Sbjct: 83  GHHTNVQQKQKIEILIRKLYREDL---GEEAAQIVELRLWSLEESLEASQILKMEPKTRR 139

Query: 405 NAGFFLLQSDVCNRMRGAC 461
                 L+  +   +RG C
Sbjct: 140 ILISMKLERWIRTLLRGKC 158

>DRL22_ARATH (Q9LW09) Putative disease resistance protein At3g15700|
          Length = 375

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = +3

Query: 84  KAILERCLKVYKEKLEGLGLPVPVEKLQQIHEVANDEAKMLFDKQHFGKHHAVQSVLKLE 263
           K+++ RC+ V KE      L    E+L+ +  +     KM  D+Q   +   VQ  L+  
Sbjct: 6   KSMVTRCIYVGKENDNVKKLKTATEELKDLRNIVMKRVKMYEDQQKLKRLEKVQVWLRQA 65

Query: 264 DEIKKVYKSFLLANEYQSS 320
           D   K  +  L+     SS
Sbjct: 66  DVAIKEAEEMLITLMSSSS 84

>KITH_LACJO (Q74K26) Thymidine kinase (EC 2.7.1.21)|
          Length = 199

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 195 AKMLFDKQHFGKHHAVQSVLKLEDEIKKVYKSFLLANEYQS 317
           A +L D+  F K H V    K+ DE+K    +F L N++Q+
Sbjct: 88  ACVLIDEAQFLKRHHVLECAKIVDELKIPVMAFGLKNDFQN 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,384,416
Number of Sequences: 219361
Number of extensions: 1605864
Number of successful extensions: 4648
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4645
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)