ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal2e20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR356222.24| Zebrafish DNA sequence from clone DKEY-103J14 i... 48 0.036
2gb|AC100386.29| Mus musculus chromosome 10, clone RP23-132J19, c... 44 0.56
3emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromo... 42 2.2
4ref|XM_970443.1| PREDICTED: Tribolium castaneum similar to CG120... 42 2.2
5dbj|AB013448.1| Oryza sativa (japonica cultivar-group) gene for ... 42 2.2
6dbj|AB013449.2| Oryza sativa (japonica cultivar-group) mRNA for ... 42 2.2
7dbj|AB013450.1| Oryza sativa (japonica cultivar-group) DNA, simi... 42 2.2
8dbj|AB026839.1| Oryza sativa gene for Pi-b protein, complete cds 42 2.2
9emb|AL513216.9| Human DNA sequence from clone RP4-750G5 on chrom... 40 8.7
10emb|AL356772.14| Human DNA sequence from clone RP11-47B24 on chr... 40 8.7
11gb|AC104507.5| Drosophila melanogaster 3L BAC RP98-26J11 (Roswel... 40 8.7
12gb|AC010003.8| Drosophila melanogaster 3L BAC RP98-6L11 (Roswell... 40 8.7
13ref|NM_168762.2| Drosophila melanogaster CG32195-RA (CG32195), mRNA 40 8.7
14gb|AC105068.19| Mus musculus chromosome 5, clone RP23-445H19, co... 40 8.7
15gb|AE003521.3| Drosophila melanogaster chromosome 3L, section 64... 40 8.7
16gb|AC118926.13| Mus musculus chromosome 5, clone RP23-323D23, co... 40 8.7
17gb|U17003.1|DTU17003 Dugesia tigrina DTPOU3 transcription factor... 40 8.7

>emb|CR356222.24| Zebrafish DNA sequence from clone DKEY-103J14 in linkage group 13,
             complete sequence
          Length = 206656

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 592   ttcagactgcttctacctgtttcaaaga 619
             ||||||||||||||||||| ||||||||
Sbjct: 18035 ttcagactgcttctacctgcttcaaaga 18008



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>gb|AC100386.29| Mus musculus chromosome 10, clone RP23-132J19, complete sequence
          Length = 216928

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 561   acagacctgttttgaagctcaa 582
             ||||||||||||||||||||||
Sbjct: 95340 acagacctgttttgaagctcaa 95361



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>emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the TYRP1
              gene for tyrosinase-related protein 1, the 3' end of a
              novel gene and the 5' end of a novel gene (FLJ38505
              FLJ90271), complete sequence
          Length = 162151

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     gaaaccctggtttatctggct 70
              |||||||||||||||||||||
Sbjct: 156242 gaaaccctggtttatctggct 156222



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>ref|XM_970443.1| PREDICTED: Tribolium castaneum similar to CG12047-PA, isoform A
            (LOC664436), mRNA
          Length = 6792

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 290  agcttcgtttcagtctcaacc 310
            |||||||||||||||||||||
Sbjct: 1259 agcttcgtttcagtctcaacc 1239



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>dbj|AB013448.1| Oryza sativa (japonica cultivar-group) gene for Pib, complete cds
          Length = 10322

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 70   tgcttggatgccctatcatcacctccgaaaaaactacagagcctgaagctgta 122
            ||||||||||   |||| || |||||| |||| ||||||||||| ||||||||
Sbjct: 8383 tgcttggatgatatatcctcgcctccggaaaacctacagagcctcaagctgta 8435



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>dbj|AB013449.2| Oryza sativa (japonica cultivar-group) mRNA for Pib, complete cds
          Length = 4288

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 70   tgcttggatgccctatcatcacctccgaaaaaactacagagcctgaagctgta 122
            ||||||||||   |||| || |||||| |||| ||||||||||| ||||||||
Sbjct: 3469 tgcttggatgatatatcctcgcctccggaaaacctacagagcctcaagctgta 3521



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>dbj|AB013450.1| Oryza sativa (japonica cultivar-group) DNA, similar sequence to Pib
            gene
          Length = 9827

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                     
Query: 66   tggctgcttggatgccctatcatcacctccgaaaaaactacagagcctgaagctgta 122
            ||||||||||||||   |||| || |||||| |||| || |||||||| ||||||||
Sbjct: 8878 tggctgcttggatgatatatcctcgcctccggaaaacctgcagagcctcaagctgta 8934



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>dbj|AB026839.1| Oryza sativa gene for Pi-b protein, complete cds
          Length = 7295

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 70   tgcttggatgccctatcatcacctccgaaaaaactacagagcctgaagctgta 122
            ||||||||||   |||| || |||||| |||| ||||||||||| ||||||||
Sbjct: 5986 tgcttggatgatatatcctcgcctccggaaaacctacagagcctcaagctgta 6038



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>emb|AL513216.9| Human DNA sequence from clone RP4-750G5 on chromosome 6, complete
            sequence
          Length = 49668

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 332  tgacggtgctggagctcagcctcc 355
            |||| |||||||||||||||||||
Sbjct: 6578 tgacagtgctggagctcagcctcc 6601



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>emb|AL356772.14| Human DNA sequence from clone RP11-47B24 on chromosome 10, complete
             sequence
          Length = 163861

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    tcacctccgaaaaaactaca 107
             ||||||||||||||||||||
Sbjct: 26641 tcacctccgaaaaaactaca 26660



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>gb|AC104507.5| Drosophila melanogaster 3L BAC RP98-26J11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 183911

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 265    ttgaggcactcgttcgctggcgaa 288
              |||| |||||||||||||||||||
Sbjct: 121648 ttgacgcactcgttcgctggcgaa 121625



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>gb|AC010003.8| Drosophila melanogaster 3L BAC RP98-6L11 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 183291

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 265  ttgaggcactcgttcgctggcgaa 288
            |||| |||||||||||||||||||
Sbjct: 2055 ttgacgcactcgttcgctggcgaa 2032



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>ref|NM_168762.2| Drosophila melanogaster CG32195-RA (CG32195), mRNA
          Length = 1475

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 265  ttgaggcactcgttcgctggcgaa 288
            |||| |||||||||||||||||||
Sbjct: 1418 ttgacgcactcgttcgctggcgaa 1395



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>gb|AC105068.19| Mus musculus chromosome 5, clone RP23-445H19, complete sequence
          Length = 199878

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     gaaaaaactacagagcctgaagct 119
              |||||||| |||||||||||||||
Sbjct: 195588 gaaaaaaccacagagcctgaagct 195611



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>gb|AE003521.3| Drosophila melanogaster chromosome 3L, section 64 of 83 of the complete
             sequence
          Length = 271237

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 265   ttgaggcactcgttcgctggcgaa 288
             |||| |||||||||||||||||||
Sbjct: 36085 ttgacgcactcgttcgctggcgaa 36062



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>gb|AC118926.13| Mus musculus chromosome 5, clone RP23-323D23, complete sequence
          Length = 232698

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     gaaaaaactacagagcctgaagct 119
              |||||||| |||||||||||||||
Sbjct: 182531 gaaaaaaccacagagcctgaagct 182508



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>gb|U17003.1|DTU17003 Dugesia tigrina DTPOU3 transcription factor (dtPOU3) gene, partial
           cds
          Length = 318

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 572 ttgaagctcaactgaattgcttca 595
           |||||||||||||||| |||||||
Sbjct: 80  ttgaagctcaactgaagtgcttca 57


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,007,190
Number of Sequences: 3902068
Number of extensions: 5007190
Number of successful extensions: 91175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91142
Number of HSP's gapped (non-prelim): 33
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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