ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2e16 |
|---|---|
| Clone Library Name | barley_pub |
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 109 bits (272), Expect = 7e-24 Identities = 50/88 (56%), Positives = 62/88 (70%) Frame = +3 Query: 12 DFEKTLXYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQG 191 D+ + W QDKW G F VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Sbjct: 457 DYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKA 516 Query: 192 IQMLKIFKEHVSKTSILEDFTFYENRQK 275 Q+LKI + TSI +DF+ YE RQ+ Sbjct: 517 KQVLKIIASYKHTTSIFDDFSHYEKRQE 544
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 107 bits (268), Expect = 2e-23 Identities = 49/88 (55%), Positives = 61/88 (69%) Frame = +3 Query: 12 DFEKTLXYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQG 191 D+ + W QDKW G F V+W VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Sbjct: 457 DYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKA 516 Query: 192 IQMLKIFKEHVSKTSILEDFTFYENRQK 275 Q+LKI + TSI +DF YE RQ+ Sbjct: 517 KQVLKIISSYKHTTSIFDDFAHYEKRQE 544
>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)| (NY-REN-2 antigen) (CLL-associated antigen KW-14) Length = 579 Score = 107 bits (266), Expect = 3e-23 Identities = 49/88 (55%), Positives = 61/88 (69%) Frame = +3 Query: 12 DFEKTLXYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQG 191 D+ W QDKW G F V+W VKDVPN+ L+HI LENNE KPVTNSRDTQ++ LE+ Sbjct: 478 DYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKA 537 Query: 192 IQMLKIFKEHVSKTSILEDFTFYENRQK 275 Q+LKI + TSI +DF+ YE RQ+ Sbjct: 538 KQVLKIIASYKHTTSIFDDFSHYEKRQE 565
>YTHD3_PONPY (Q5RFL8) YTH domain protein 3| Length = 585 Score = 107 bits (266), Expect = 3e-23 Identities = 50/88 (56%), Positives = 59/88 (67%) Frame = +3 Query: 12 DFEKTLXYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQG 191 D+ W QDKW G F VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Sbjct: 484 DYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKA 543 Query: 192 IQMLKIFKEHVSKTSILEDFTFYENRQK 275 Q+LKI TSI +DF YE RQ+ Sbjct: 544 KQVLKIIATFKHTTSIFDDFAHYEKRQE 571
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 107 bits (266), Expect = 3e-23 Identities = 50/88 (56%), Positives = 59/88 (67%) Frame = +3 Query: 12 DFEKTLXYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQG 191 D+ W QDKW G F VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Sbjct: 484 DYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKA 543 Query: 192 IQMLKIFKEHVSKTSILEDFTFYENRQK 275 Q+LKI TSI +DF YE RQ+ Sbjct: 544 KQVLKIIATFKHTTSIFDDFAHYEKRQE 571
>YTHD3_HUMAN (Q7Z739) YTH domain protein 3| Length = 585 Score = 107 bits (266), Expect = 3e-23 Identities = 50/88 (56%), Positives = 59/88 (67%) Frame = +3 Query: 12 DFEKTLXYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQG 191 D+ W QDKW G F VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Sbjct: 484 DYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKA 543 Query: 192 IQMLKIFKEHVSKTSILEDFTFYENRQK 275 Q+LKI TSI +DF YE RQ+ Sbjct: 544 KQVLKIIATFKHTTSIFDDFAHYEKRQE 571
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 37.4 bits (85), Expect = 0.033 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +3 Query: 57 GSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIF 212 G F + W +++P H+ NE KPV RD Q+I LE G Q+ +F Sbjct: 444 GVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 495
>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor| YT521) Length = 727 Score = 37.4 bits (85), Expect = 0.033 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +3 Query: 57 GSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIF 212 G F + W +++P H+ NE KPV RD Q+I LE G Q+ +F Sbjct: 441 GVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 492
>CAN2_CHICK (Q92178) Calpain-2 catalytic subunit precursor (EC 3.4.22.53)| (Calpain-2 large subunit) (Calcium-activated neutral proteinase 2) (CANP 2) (Calpain M-type) (M-calpain) (Millimolar-calpain) Length = 699 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/104 (19%), Positives = 41/104 (39%) Frame = +3 Query: 72 KWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDF 251 +W+ ++ P N+ K I +G + S D + + K+ K H + E+ Sbjct: 212 EWYELQKAPPNLFKIIQKALQKGSLLGCSIDITSAAETEAVTSQKLVKGHAYSVTGAEEV 271 Query: 252 TFYENRQKLMQEKRXXXXXXXXXVWDSRAPNLVAGEKQQEPKVT 383 F + QKL++ + W+ PN + + ++T Sbjct: 272 NFRGSIQKLIRIRNPWGEVEWTGKWNDNCPNWSGVDPEVRERLT 315
>YFEI_CAEEL (P83502) Hypothetical protein T04A11.12| Length = 327 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = -3 Query: 439 FGFPLMASCCFSPLT-PFGTVTFG--SCCFSPATRFGALLSHTCFWICCCFI 293 F FP + C ++ PFG + F F F +LL +T FW+ CC I Sbjct: 173 FMFPAIGYCSYAAYPFPFGAIIFRIERTFFGLVNNF-SLLFNTLFWMTCCII 223
>EPIB_STAEP (P30195) Epidermin biosynthesis protein epiB| Length = 986 Score = 30.0 bits (66), Expect = 5.2 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 16/95 (16%) Frame = +3 Query: 39 QQDKWNGSFSV---KWHIVKDV-----PNNIL------KHIVLENNEGKPVTNSRDTQD- 173 + + W F+ KWHI KDV N +L KH+++ E K R + Sbjct: 622 ETENWLNRFATIREKWHIPKDVIIAFGDNRLLLNLLNDKHLIILKKELKKHGRIRILESF 681 Query: 174 INLEQGIQMLKIFKEHVSKTSILE-DFTFYENRQK 275 IN +ML+I KTS+ E F +NR K Sbjct: 682 INESNNERMLEIVTPLYKKTSLKEQSFIIPKNRNK 716
>GNPTA_HUMAN (Q3T906) N-acetylglucosamine-1-phosphotransferase subunits| alpha/beta precursor (EC 2.7.8.17) (GlcNAc-1-phosphotransferase alpha/beta subunits) (UDP-N-acetylglucosamine-1-phosphotransferase alpha/beta subunits) (Stealth protein GNPTAB) [Conta Length = 1256 Score = 30.0 bits (66), Expect = 5.2 Identities = 25/105 (23%), Positives = 46/105 (43%) Frame = +3 Query: 156 SRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQKLMQEKRXXXXXXXXXVWDSR 335 S +T D+ LE G LK + ++SK+++L F K+ + + D Sbjct: 710 SLNTLDLQLEHGDITLKGY--NLSKSALLRSFLMNSQHAKIKNQ---------AIITDET 758 Query: 336 APNLVAGEKQQEPKVTVPNGVNGEKQQDAINGKPKSPVANGVNGG 470 +LVA +++Q K +PN + ++ + S NG + G Sbjct: 759 NDSLVAPQEKQVHKSILPNSLGVSERLQRLTFPAVSVKVNGHDQG 803
>Y655_ARCFU (O29602) Hypothetical protein AF0655| Length = 425 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/40 (27%), Positives = 25/40 (62%) Frame = +3 Query: 159 RDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQKL 278 RD QD+++E+ +++LK ++ + + ++ENR+ L Sbjct: 87 RDPQDMSIEEKVELLKDLEKIIRDVCVSTKLVYFENRRVL 126
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +3 Query: 363 QQEPKVTVPNGVNGEKQQDAINGKPKSPVANGVNG 467 Q EP V P G GEK + G+P P A G G Sbjct: 1224 QGEPGVKGPRGERGEKGESGQPGEPGPPGAKGPQG 1258
>TROP_HUMAN (Q12816) Trophinin (MAGE-D3 antigen)| Length = 1387 Score = 29.3 bits (64), Expect = 8.9 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%) Frame = -3 Query: 460 TPFATGDFGFPLMASCCF--SPLTPFG-------TVTFGSCCFSPATRFGALLSHTCF 314 +P ++G FG L S CF SP T G +V+FG + A G L + CF Sbjct: 858 SPSSSGSFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGGTLSTSICF 915 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,176,082 Number of Sequences: 219361 Number of extensions: 1306198 Number of successful extensions: 4455 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4449 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
