ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal2e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192736.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 355 bits (179), Expect = 9e-95 Identities = 356/415 (85%) Strand = Plus / Plus Query: 16 tccttcacctttgacaatgtgaagtactcactgtatgactgtgtatatctttttaaaaat 75 |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct: 88 tccttcacatttgacaatgtgaagtactcactgtatgacaatgtatatctttttaagagt 147 Query: 76 ggagaacctgaaccatacattggaaagatagtaaagatatggcagcaaaatgaagctaag 135 || || ||||||| ||||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 148 ggtgagtctgaaccttacattggaaagataataaagatatggcagcaaaatcaggctaag 207 Query: 136 aaagtaaagattctttggtttttcaccccggatgagatcagaaattatttagaaggcccc 195 ||||||||||||||||||||||| |||||||||||| |||| ||||| ||||| Sbjct: 208 aaagtaaagattctttggttttttctcccggatgagattcgaaaacatttaagtggccct 267 Query: 196 gtggtggagaatgagatatttcttgcttctggtgatggcactggccttgccgatatcaac 255 || |||| || |||||||||||||||| |||||| ||| ||||||||| ||||||||| Sbjct: 268 gtaatggaaaaggagatatttcttgcttgtggtgaaggcgttggccttgctgatatcaac 327 Query: 256 ccactggaatctattgctggtaaatgcacagttgtttgcatttcaaaggatgaaaggaat 315 ||||||||| |||||| ||| |||||||| || ||||||||||||||||||| |||||| Sbjct: 328 ccactggaagctattggtgggaaatgcactgtgctttgcatttcaaaggatgagaggaat 387 Query: 316 cgccagcctaccccaaaggaacaaacggtcgctgattatatcttctataggttttttgat 375 || || ||| |||| | ||||| | | | ||||||||||||||||| |||||||||||| Sbjct: 388 cgtcaaccttcccccagggaactagcaatggctgattatatcttctacaggttttttgat 447 Query: 376 gttggaaactgcacactttctgagcaagtacctgagaaaattgtagggctggaag 430 ||| | |||||||||||||| ||| ||||||||||||||| |||| |||||| Sbjct: 448 gttaacagttgcacactttctgaacaattacctgagaaaattgcaggggtggaag 502
>dbj|AK102292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089K24, full insert sequence Length = 2163 Score = 355 bits (179), Expect = 9e-95 Identities = 356/415 (85%) Strand = Plus / Plus Query: 16 tccttcacctttgacaatgtgaagtactcactgtatgactgtgtatatctttttaaaaat 75 |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct: 272 tccttcacatttgacaatgtgaagtactcactgtatgacaatgtatatctttttaagagt 331 Query: 76 ggagaacctgaaccatacattggaaagatagtaaagatatggcagcaaaatgaagctaag 135 || || ||||||| ||||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 332 ggtgagtctgaaccttacattggaaagataataaagatatggcagcaaaatcaggctaag 391 Query: 136 aaagtaaagattctttggtttttcaccccggatgagatcagaaattatttagaaggcccc 195 ||||||||||||||||||||||| |||||||||||| |||| ||||| ||||| Sbjct: 392 aaagtaaagattctttggttttttctcccggatgagattcgaaaacatttaagtggccct 451 Query: 196 gtggtggagaatgagatatttcttgcttctggtgatggcactggccttgccgatatcaac 255 || |||| || |||||||||||||||| |||||| ||| ||||||||| ||||||||| Sbjct: 452 gtaatggaaaaggagatatttcttgcttgtggtgaaggcgttggccttgctgatatcaac 511 Query: 256 ccactggaatctattgctggtaaatgcacagttgtttgcatttcaaaggatgaaaggaat 315 ||||||||| |||||| ||| |||||||| || ||||||||||||||||||| |||||| Sbjct: 512 ccactggaagctattggtgggaaatgcactgtgctttgcatttcaaaggatgagaggaat 571 Query: 316 cgccagcctaccccaaaggaacaaacggtcgctgattatatcttctataggttttttgat 375 || || ||| |||| | ||||| | | | ||||||||||||||||| |||||||||||| Sbjct: 572 cgtcaaccttcccccagggaactagcaatggctgattatatcttctacaggttttttgat 631 Query: 376 gttggaaactgcacactttctgagcaagtacctgagaaaattgtagggctggaag 430 ||| | |||||||||||||| ||| ||||||||||||||| |||| |||||| Sbjct: 632 gttaacagttgcacactttctgaacaattacctgagaaaattgcaggggtggaag 686
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 236 bits (119), Expect = 6e-59 Identities = 215/247 (87%) Strand = Plus / Plus Query: 16 tccttcacctttgacaatgtgaagtactcactgtatgactgtgtatatctttttaaaaat 75 |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct: 24134985 tccttcacatttgacaatgtgaagtactcactgtatgacaatgtatatctttttaagagt 24135044 Query: 76 ggagaacctgaaccatacattggaaagatagtaaagatatggcagcaaaatgaagctaag 135 || || ||||||| ||||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 24135045 ggtgagtctgaaccttacattggaaagataataaagatatggcagcaaaatcaggctaag 24135104 Query: 136 aaagtaaagattctttggtttttcaccccggatgagatcagaaattatttagaaggcccc 195 ||||||||||||||||||||||| |||||||||||| |||| ||||| ||||| Sbjct: 24135105 aaagtaaagattctttggttttttctcccggatgagattcgaaaacatttaagtggccct 24135164 Query: 196 gtggtggagaatgagatatttcttgcttctggtgatggcactggccttgccgatatcaac 255 || |||| || |||||||||||||||| |||||| ||| ||||||||| ||||||||| Sbjct: 24135165 gtaatggaaaaggagatatttcttgcttgtggtgaaggcgttggccttgctgatatcaac 24135224 Query: 256 ccactgg 262 ||||||| Sbjct: 24135225 ccactgg 24135231 Score = 123 bits (62), Expect = 6e-25 Identities = 143/170 (84%) Strand = Plus / Plus Query: 261 ggaatctattgctggtaaatgcacagttgtttgcatttcaaaggatgaaaggaatcgcca 320 |||| |||||| ||| |||||||| || ||||||||||||||||||| |||||||| || Sbjct: 24136016 ggaagctattggtgggaaatgcactgtgctttgcatttcaaaggatgagaggaatcgtca 24136075 Query: 321 gcctaccccaaaggaacaaacggtcgctgattatatcttctataggttttttgatgttgg 380 ||| |||| | ||||| | | | ||||||||||||||||| ||||||||||||||| Sbjct: 24136076 accttcccccagggaactagcaatggctgattatatcttctacaggttttttgatgttaa 24136135 Query: 381 aaactgcacactttctgagcaagtacctgagaaaattgtagggctggaag 430 | |||||||||||||| ||| ||||||||||||||| |||| |||||| Sbjct: 24136136 cagttgcacactttctgaacaattacctgagaaaattgcaggggtggaag 24136185
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 236 bits (119), Expect = 6e-59 Identities = 215/247 (87%) Strand = Plus / Plus Query: 16 tccttcacctttgacaatgtgaagtactcactgtatgactgtgtatatctttttaaaaat 75 |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct: 110807 tccttcacatttgacaatgtgaagtactcactgtatgacaatgtatatctttttaagagt 110866 Query: 76 ggagaacctgaaccatacattggaaagatagtaaagatatggcagcaaaatgaagctaag 135 || || ||||||| ||||||||||||||| |||||||||||||||||||| | |||||| Sbjct: 110867 ggtgagtctgaaccttacattggaaagataataaagatatggcagcaaaatcaggctaag 110926 Query: 136 aaagtaaagattctttggtttttcaccccggatgagatcagaaattatttagaaggcccc 195 ||||||||||||||||||||||| |||||||||||| |||| ||||| ||||| Sbjct: 110927 aaagtaaagattctttggttttttctcccggatgagattcgaaaacatttaagtggccct 110986 Query: 196 gtggtggagaatgagatatttcttgcttctggtgatggcactggccttgccgatatcaac 255 || |||| || |||||||||||||||| |||||| ||| ||||||||| ||||||||| Sbjct: 110987 gtaatggaaaaggagatatttcttgcttgtggtgaaggcgttggccttgctgatatcaac 111046 Query: 256 ccactgg 262 ||||||| Sbjct: 111047 ccactgg 111053 Score = 123 bits (62), Expect = 6e-25 Identities = 143/170 (84%) Strand = Plus / Plus Query: 261 ggaatctattgctggtaaatgcacagttgtttgcatttcaaaggatgaaaggaatcgcca 320 |||| |||||| ||| |||||||| || ||||||||||||||||||| |||||||| || Sbjct: 111838 ggaagctattggtgggaaatgcactgtgctttgcatttcaaaggatgagaggaatcgtca 111897 Query: 321 gcctaccccaaaggaacaaacggtcgctgattatatcttctataggttttttgatgttgg 380 ||| |||| | ||||| | | | ||||||||||||||||| ||||||||||||||| Sbjct: 111898 accttcccccagggaactagcaatggctgattatatcttctacaggttttttgatgttaa 111957 Query: 381 aaactgcacactttctgagcaagtacctgagaaaattgtagggctggaag 430 | |||||||||||||| ||| ||||||||||||||| |||| |||||| Sbjct: 111958 cagttgcacactttctgaacaattacctgagaaaattgcaggggtggaag 112007
>emb|CR956430.2| M.truncatula DNA sequence from clone MTH2-49I19 on chromosome 3, complete sequence Length = 97738 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 261 ggaatctattgctggtaaatgcacagttgtttgcatttcaaagga 305 |||| |||||||||| ||||||| |||||||||||||||||||| Sbjct: 39899 ggaagctattgctggaaaatgcaatgttgtttgcatttcaaagga 39855
>gb|AC127429.25| Medicago truncatula clone mth2-9o20, complete sequence Length = 130703 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ggaatctattgctggtaaatgcacagttgtttgcatttcaaagga 305 ||||||||||||||| ||||||| ||||||||||||| ||||| Sbjct: 128740 ggaatctattgctggaaaatgcaacattgtttgcatttctaagga 128784
>emb|BX001003.6| Zebrafish DNA sequence from clone CH211-215E7, complete sequence Length = 212403 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 tgcacagttgtttgcatttca 300 ||||||||||||||||||||| Sbjct: 151797 tgcacagttgtttgcatttca 151777
>gb|AC144762.3| Mus musculus BAC clone RP24-95D6 from 3, complete sequence Length = 198005 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ttaaaaatggagaacctgaac 88 ||||||||||||||||||||| Sbjct: 158293 ttaaaaatggagaacctgaac 158313
>emb|AL929141.7| Zebrafish DNA sequence from clone CH211-149P5 in linkage group 18, complete sequence Length = 182116 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 tgcacagttgtttgcatttca 300 ||||||||||||||||||||| Sbjct: 126495 tgcacagttgtttgcatttca 126515
>emb|AL645524.8| Mouse DNA sequence from clone RP23-35D7 on chromosome 11, complete sequence Length = 210163 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 136 aaagtaaagattctttggtttttca 160 |||| |||||||||||||||||||| Sbjct: 37121 aaaggaaagattctttggtttttca 37145
>emb|AL732459.5| Mouse DNA sequence from clone RP23-115J4 on chromosome X, complete sequence Length = 201897 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 gcttctggtgatggcactggc 240 ||||||||||||||||||||| Sbjct: 48397 gcttctggtgatggcactggc 48417
>ref|NM_117262.2| Arabidopsis thaliana signal transducer AT4G11920 mRNA, complete cds Length = 1895 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 ttcttgcttctggtgatggcactg 238 ||||||||||||||| |||||||| Sbjct: 1171 ttcttgcttctggtggtggcactg 1194
>gb|AC111034.11| Mus musculus chromosome 8, clone RP23-202K1, complete sequence Length = 200303 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tgtatatctttttaaaaatg 76 |||||||||||||||||||| Sbjct: 192735 tgtatatctttttaaaaatg 192754
>gb|AY233385.1| Zygophyllum atriplicoides tRNA-Leu (trnL) gene, intron; chloroplast gene for chloroplast product Length = 430 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 365 tatatctttttaaaaatgga 384
>gb|AC156572.3| Mus musculus BAC clone RP23-216C6 from chromosome 13, complete sequence Length = 208578 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tgtatatctttttaaaaatg 76 |||||||||||||||||||| Sbjct: 42097 tgtatatctttttaaaaatg 42116
>gb|AC113053.21| Mus musculus chromosome 17, clone RP23-250J2, complete sequence Length = 234124 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ctatggttccttcacctttgacaa 32 |||||||| ||||||||||||||| Sbjct: 182294 ctatggtttcttcacctttgacaa 182271
>gb|AY300791.1| Zygophyllum rosowii chloroplast tRNA-Leu gene, intron Length = 416 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 346 tatatctttttaaaaatgga 365
>gb|AY300787.1| Zygophyllum gontscharovii chloroplast tRNA-Leu gene, intron Length = 418 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 353 tatatctttttaaaaatgga 372
>gb|AY300781.1| Roepera morgsana chloroplast tRNA-Leu gene, intron Length = 385 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 320 tatatctttttaaaaatgga 339
>gb|AY300780.1| Roepera leptopetala chloroplast tRNA-Leu gene, intron Length = 393 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 328 tatatctttttaaaaatgga 347
>gb|AY300779.1| Roepera iodocarpa chloroplast tRNA-Leu gene, intron Length = 382 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 317 tatatctttttaaaaatgga 336
>gb|AY300778.1| Roepera foetida chloroplast tRNA-Leu gene, intron Length = 392 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 327 tatatctttttaaaaatgga 346
>gb|AY300776.1| Roepera compressa chloroplast tRNA-Leu gene, intron Length = 382 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 317 tatatctttttaaaaatgga 336
>gb|AC147048.2| Mus musculus BAC clone RP23-91H23 from chromosome 8, complete sequence Length = 124152 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tgttggaaactgcacacttt 394 |||||||||||||||||||| Sbjct: 81006 tgttggaaactgcacacttt 81025
>gb|AC160517.3| Mus musculus chromosome 8, clone RP23-279A11, complete sequence Length = 169477 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tgtatatctttttaaaaatg 76 |||||||||||||||||||| Sbjct: 42380 tgtatatctttttaaaaatg 42399
>gb|AC145425.5| Homo sapiens 3 BAC RP11-411F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135894 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 aaaatgaagctaagaaagtaaaga 145 ||||||||||||||||||| |||| Sbjct: 23490 aaaatgaagctaagaaagtgaaga 23513
>gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome 5, complete sequence Length = 176338 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gtatatctttttaaaaatgg 77 |||||||||||||||||||| Sbjct: 66152 gtatatctttttaaaaatgg 66133
>gb|AY233384.1| Roepera apiculata tRNA-Leu (trnL) gene, intron; chloroplast gene for chloroplast product Length = 387 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 322 tatatctttttaaaaatgga 341
>gb|AC116463.9| Mus musculus chromosome 17, clone RP23-30P1, complete sequence Length = 237187 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 ctatggttccttcacctttgacaa 32 |||||||| ||||||||||||||| Sbjct: 195817 ctatggtttcttcacctttgacaa 195840
>emb|AL592435.2| Human DNA sequence from clone RP11-77M5 on chromosome 1 Contains a novel gene, the 5' end of a novel gene and the CDCA1 gene for cell division cycle associated 1, complete sequence Length = 161679 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 tggaatctattgctggtaaa 279 |||||||||||||||||||| Sbjct: 53971 tggaatctattgctggtaaa 53952
>emb|AL138969.16| Human DNA sequence from clone RP1-110C15 on chromosome X, complete sequence Length = 144658 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 cactgtatgactgtgtatat 63 |||||||||||||||||||| Sbjct: 75635 cactgtatgactgtgtatat 75654
>emb|AL138756.23| Human DNA sequence from clone RP11-4O1 on chromosome 9q31.3-33.1 Contains the 3' end of gene DKFZP761E1824, complete sequence Length = 189156 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 aattgtagggctggaagtca 433 |||||||||||||||||||| Sbjct: 147001 aattgtagggctggaagtca 146982
>gb|AY145471.1| Rachiplusia ou multiple nucleopolyhedrovirus, complete genome Length = 131526 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ggaaactgcacactttctga 398 |||||||||||||||||||| Sbjct: 126103 ggaaactgcacactttctga 126084
>gb|AY091235.1| Arabidopsis thaliana putative Srw1 protein (At4g11920) mRNA, complete cds Length = 1459 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 ttcttgcttctggtgatggcactg 238 ||||||||||||||| |||||||| Sbjct: 1046 ttcttgcttctggtggtggcactg 1069
>gb|AY063875.1| Arabidopsis thaliana putative Srw1 protein (At4g11920) mRNA, complete cds Length = 1911 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 ttcttgcttctggtgatggcactg 238 ||||||||||||||| |||||||| Sbjct: 1171 ttcttgcttctggtggtggcactg 1194
>emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33 Length = 190026 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 ttcttgcttctggtgatggcactg 238 ||||||||||||||| |||||||| Sbjct: 18531 ttcttgcttctggtggtggcactg 18508
>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project) Length = 90824 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 ttcttgcttctggtgatggcactg 238 ||||||||||||||| |||||||| Sbjct: 75019 ttcttgcttctggtggtggcactg 74996
>emb|AJ630364.1| Canis familiaris major histocompatibility complex class II region on chromosome CFA12, partial sequence, BAC clone 58o15, containing DLA-DRB1 and RPS27 pseudogenes, DLA-DOB, TAP2, PSMB8, TAP1 and PSMB9 genes, and RPS15A and ATP6V0D2 pseudogenes Length = 139950 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 atatctttttaaaaatggag 79 |||||||||||||||||||| Sbjct: 93335 atatctttttaaaaatggag 93354
>gb|AC103560.2| Homo sapiens chromosome 3 clone RP11-673E20, complete sequence Length = 186241 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 cactgtatgactgtgtatatcttt 67 |||||||||||||||||| ||||| Sbjct: 125405 cactgtatgactgtgtatgtcttt 125428
>gb|AC024102.19| Homo sapiens 3 BAC RP11-252O10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148163 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 cactgtatgactgtgtatatcttt 67 |||||||||||||||||| ||||| Sbjct: 13053 cactgtatgactgtgtatgtcttt 13076
>gb|AC156278.8| Mus musculus 6 BAC RP24-249N9 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162919 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ttggaaactgcacactttct 396 |||||||||||||||||||| Sbjct: 97005 ttggaaactgcacactttct 96986
>gb|AC079768.8| Homo sapiens BAC clone RP11-205M3 from 4, complete sequence Length = 134004 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tgtgtatatctttttaaaaa 74 |||||||||||||||||||| Sbjct: 19816 tgtgtatatctttttaaaaa 19797
>emb|BX826598.1|CNS0A42I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1713 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 ttcttgcttctggtgatggcactg 238 ||||||||||||||| |||||||| Sbjct: 1160 ttcttgcttctggtggtggcactg 1183
>gb|AC109354.4| Homo sapiens BAC clone RP11-536N13 from 2, complete sequence Length = 34533 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 cactgtatgactgtgtatat 63 |||||||||||||||||||| Sbjct: 9790 cactgtatgactgtgtatat 9771
>gb|AC073892.6| Homo sapiens BAC clone RP11-696G20 from 2, complete sequence Length = 91076 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttcacctttgacaatgtgaa 38 |||||||||||||||||||| Sbjct: 65193 ttcacctttgacaatgtgaa 65174
>gb|AC013445.8| Homo sapiens BAC clone RP11-489J10 from 2, complete sequence Length = 183960 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tatttcttgcttctggtgat 231 |||||||||||||||||||| Sbjct: 100022 tatttcttgcttctggtgat 100041
>gb|AC007394.4| Homo sapiens BAC clone RP11-489G12 from 2, complete sequence Length = 171468 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tatggcagcaaaatgaagct 132 |||||||||||||||||||| Sbjct: 44102 tatggcagcaaaatgaagct 44121
>gb|AC084499.1|CBRG12M22 Caenorhabditis briggsae cosmid G12M22, complete sequence Length = 35466 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 atctttttaaaaatggagaa 81 |||||||||||||||||||| Sbjct: 16287 atctttttaaaaatggagaa 16306
>gb|AC116764.10| Mus musculus chromosome 15, clone RP23-388P12, complete sequence Length = 217156 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 atttcttgcttctggtgatg 232 |||||||||||||||||||| Sbjct: 182757 atttcttgcttctggtgatg 182776
>gb|AC009044.3|AC009044 Homo sapiens chromosome 16 clone RP11-190D6, complete sequence Length = 167195 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 caggatgtgcaaggcatgaa 500 |||||||||||||||||||| Sbjct: 61081 caggatgtgcaaggcatgaa 61100
>gb|AC140552.3| Mus musculus BAC clone RP24-372G15 from 8, complete sequence Length = 130431 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tgttggaaactgcacacttt 394 |||||||||||||||||||| Sbjct: 126513 tgttggaaactgcacacttt 126532
>emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 map Xq28, complete sequence Length = 166183 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 cactgtatgactgtgtatat 63 |||||||||||||||||||| Sbjct: 138369 cactgtatgactgtgtatat 138388
>emb|CT737235.2| Pan troglodytes chromosome X clone PTB-029K08 map Xq28, complete sequence Length = 179483 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 cactgtatgactgtgtatat 63 |||||||||||||||||||| Sbjct: 37880 cactgtatgactgtgtatat 37899
>dbj|AP002961.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-2I22, complete sequence Length = 157903 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tgtatatctttttaaaaatg 76 |||||||||||||||||||| Sbjct: 113910 tgtatatctttttaaaaatg 113929
>emb|AL845418.17| Mouse DNA sequence from clone RP23-207F4 on chromosome 2, complete sequence Length = 165376 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 407 ctgagaaaattgtagggctggaag 430 ||||||||||||||||| |||||| Sbjct: 132702 ctgagaaaattgtagggatggaag 132725
>gb|AC147266.6| Mus musculus BAC clone RP24-246F6 from 8, complete sequence Length = 228955 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tgttggaaactgcacacttt 394 |||||||||||||||||||| Sbjct: 48360 tgttggaaactgcacacttt 48379
>gb|AF051897.1|AF051897 Oryctolagus cuniculus sterol carrier protein X (SCP2) mRNA, complete cds Length = 2661 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gcacagttgtttgcatttca 300 |||||||||||||||||||| Sbjct: 1906 gcacagttgtttgcatttca 1887
>gb|AC171004.2| Mus musculus BAC clone RP23-67N16 from chromosome 13, complete sequence Length = 213660 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tgtatatctttttaaaaatg 76 |||||||||||||||||||| Sbjct: 164550 tgtatatctttttaaaaatg 164569
>emb|AJ387973.1|ZRU387973 Zygophyllum hirticaule chloroplast tRNA-Leu intron and trnL-trnF intergenic spacer Length = 726 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 320 tatatctttttaaaaatgga 339
>emb|AJ387970.1|ZGL387970 Zygophyllum glaucum chloroplast tRNA-Leu intron and trnL-trnF intergenic spacer Length = 705 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tatatctttttaaaaatgga 78 |||||||||||||||||||| Sbjct: 328 tatatctttttaaaaatgga 347
>emb|AL805912.5| Mouse DNA sequence from clone RP23-425K3 on chromosome 4, complete sequence Length = 151967 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 tgaagtactcactgtatgactgtgtata 62 |||||||||| ||| ||||||||||||| Sbjct: 131673 tgaagtactcgctgaatgactgtgtata 131700 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,247,302 Number of Sequences: 3902068 Number of extensions: 6247302 Number of successful extensions: 126970 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126802 Number of HSP's gapped (non-prelim): 156 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
