>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                         
Query: 129   agcgccttcatatggcctcgcctcgcggccgcgctagagtcagaccagcagcgtgtcttc 188
             ||||||| ||||||||| || || ||||| ||||| ||||| ||| | || ||  |||||
Sbjct: 94142 agcgcctacatatggccgcggctggcggcggcgctggagtccgacgaccaccgcatcttc 94201

                                    
Query: 189   aagcctctcaccgcggagtacct 211
             ||||||||||| |||| ||||||
Sbjct: 94202 aagcctctcacggcggcgtacct 94224

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 129      agcgccttcatatggcctcgcctcgcggccgcgctagagtcagaccagcagcgtgtcttc 188
                ||||||| ||||||||| || || ||||| ||||| ||||| ||| | || ||  |||||
Sbjct: 24728346 agcgcctacatatggccgcggctggcggcggcgctggagtccgacgaccaccgcatcttc 24728287

                                       
Query: 189      aagcctctcaccgcggagtacct 211
                ||||||||||| |||| ||||||
Sbjct: 24728286 aagcctctcacggcggcgtacct 24728264

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 129      agcgccttcatatggcctcgcctcgcggccgcgctagagtcagaccagcagcgtgtcttc 188
                ||||||| ||||||||| || || ||||| ||||| ||||| ||| | || ||  |||||
Sbjct: 25040016 agcgcctacatatggccgcggctggcggcggcgctggagtccgacgaccaccgcatcttc 25039957

                                       
Query: 189      aagcctctcaccgcggagtacct 211
                ||||||||||| |||| ||||||
Sbjct: 25039956 aagcctctcacggcggcgtacct 25039934

>emb|BX897690.13| Zebrafish DNA sequence from clone CH211-197O9 in linkage group 20,
             complete sequence
          Length = 128296

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 288   gcaaatccaaatgcatccatgtt 310
             |||||||||||||||||||||||
Sbjct: 47475 gcaaatccaaatgcatccatgtt 47497



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   gcaaatccaaatgcatccat 307
             ||||||||||||||||||||
Sbjct: 46860 gcaaatccaaatgcatccat 46879

>gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q21-q23, complete
             sequence
          Length = 153053

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 370   gagttgtaaaagtttctccattgaataaat 399
             ||||||||||||||| ||||||||| ||||
Sbjct: 35359 gagttgtaaaagtttttccattgaaaaaat 35388

>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence
          Length = 145544

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 370   gagttgtaaaagtttctccattgaataaat 399
             ||||||||||||||| ||||||||| ||||
Sbjct: 84384 gagttgtaaaagtttttccattgaaaaaat 84355

>gb|AC106743.4| Homo sapiens chromosome 16 clone RP11-116D9, complete sequence
          Length = 117710

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 266   tctctaaattaattcttctcctgcaa 291
             |||||||||||||||| |||||||||
Sbjct: 92675 tctctaaattaattctcctcctgcaa 92650

>emb|AL451005.9| Human DNA sequence from clone RP11-92B10 on chromosome X Contains the
             5' end of a variant of the CUL4B gene for cullin 4B and
             the 5' end of a variant of the gene for MCT-1 protein
             (MCT-1), complete sequence
          Length = 26768

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   gggaaacccaggaacgtggat 124
             |||||||||||||||||||||
Sbjct: 17573 gggaaacccaggaacgtggat 17593

>gb|AC021325.5|AC021325 Homo sapiens chromosome , clone RP11-23N15, complete sequence
          Length = 180568

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 258   agacctcgtctctaaattaat 278
             |||||||||||||||||||||
Sbjct: 27664 agacctcgtctctaaattaat 27684

>emb|AL928801.6| Mouse DNA sequence from clone RP23-116P4 on chromosome 2, complete
             sequence
          Length = 132674

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 273   attaattcttctcctgcaaatccaa 297
             ||||||||||||||| |||||||||
Sbjct: 28266 attaattcttctcctccaaatccaa 28242

>gb|AC115031.11| Mus musculus chromosome 3, clone RP24-257J5, complete sequence
          Length = 170460

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 370    gagttgtaaaagtttctccattgaa 394
              ||||||||||||||| |||||||||
Sbjct: 151402 gagttgtaaaagtttttccattgaa 151426

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 29      cgccgcgctggcgatgccgg 48
               ||||||||||||||||||||
Sbjct: 3198292 cgccgcgctggcgatgccgg 3198311

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 62      cggcaggctgtgcacggggt 81
               ||||||||||||||||||||
Sbjct: 3446221 cggcaggctgtgcacggggt 3446202

>ref|XM_477237.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 183  gtcttcaagcctctcaccgcggagtaccttgg 214
            ||||||||||||||||| |||| ||| |||||
Sbjct: 1006 gtcttcaagcctctcacggcggcgtatcttgg 1037

>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10,
             complete sequence
          Length = 153366

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   ttctccattgaataaataaa 402
             ||||||||||||||||||||
Sbjct: 63240 ttctccattgaataaataaa 63221

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     gccgcggcttcggccacgcc 32
              ||||||||||||||||||||
Sbjct: 462804 gccgcggcttcggccacgcc 462823

>ref|XM_643073.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (528.t00001)
           partial mRNA
          Length = 2586

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cttctcctgcaaatccaaat 299
           ||||||||||||||||||||
Sbjct: 364 cttctcctgcaaatccaaat 345

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 29      cgccgcgctggcgatgccgg 48
               ||||||||||||||||||||
Sbjct: 3649847 cgccgcgctggcgatgccgg 3649866

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 29      cgccgcgctggcgatgccgg 48
               ||||||||||||||||||||
Sbjct: 3437063 cgccgcgctggcgatgccgg 3437082

>emb|AL356967.23| Human DNA sequence from clone RP11-427E4 on chromosome 6 Contains a
             novel pseudogene, complete sequence
          Length = 163869

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   taaaagtttctccattgaat 395
             ||||||||||||||||||||
Sbjct: 39196 taaaagtttctccattgaat 39215

>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10,
             complete sequence
          Length = 102275

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   ttctccattgaataaataaa 402
             ||||||||||||||||||||
Sbjct: 62080 ttctccattgaataaataaa 62061

>gb|AF056246.2| Xanthomonas campestris pv. vesicatoria hrp gene cluster, partial
             sequence
          Length = 14542

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    gccgcggcttcggccacgcc 32
             ||||||||||||||||||||
Sbjct: 11057 gccgcggcttcggccacgcc 11038

>gb|AC159628.2| Mus musculus BAC clone RP24-206C4 from chromosome 12, complete sequence
          Length = 161791

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   ataaagctccagtttgcctt 417
             ||||||||||||||||||||
Sbjct: 64884 ataaagctccagtttgcctt 64903

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 183     gtcttcaagcctctcaccgcggagtaccttgg 214
               ||||||||||||||||| |||| ||| |||||
Sbjct: 8092477 gtcttcaagcctctcacggcggcgtatcttgg 8092508

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 383     ttctccattgaataaataaa 402
               ||||||||||||||||||||
Sbjct: 5376566 ttctccattgaataaataaa 5376547

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 29      cgccgcgctggcgatgccgg 48
               ||||||||||||||||||||
Sbjct: 3186954 cgccgcgctggcgatgccgg 3186973

>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_C08
          Length = 117923

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 183   gtcttcaagcctctcaccgcggagtaccttgg 214
             ||||||||||||||||| |||| ||| |||||
Sbjct: 26249 gtcttcaagcctctcacggcggcgtatcttgg 26280

>dbj|AK069089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008B14, full
            insert sequence
          Length = 3756

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 383  ttctccattgaataaataaa 402
            ||||||||||||||||||||
Sbjct: 3699 ttctccattgaataaataaa 3680

>emb|AL445363.7|CNS07ECY Human chromosome 14 DNA sequence BAC R-671J11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181987

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    agacctcgtctctaaattaa 277
              ||||||||||||||||||||
Sbjct: 120406 agacctcgtctctaaattaa 120425

>gb|AY110277.1| Zea mays CL615_-1 mRNA sequence
          Length = 982

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 117 acgtggatcatcagcgcctt 136
           ||||||||||||||||||||
Sbjct: 636 acgtggatcatcagcgcctt 617

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 29      cgccgcgctggcgatgccgg 48
               ||||||||||||||||||||
Sbjct: 3009556 cgccgcgctggcgatgccgg 3009575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,273,771
Number of Sequences: 3902068
Number of extensions: 3273771
Number of successful extensions: 66198
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65850
Number of HSP's gapped (non-prelim): 348
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)