ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal2d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose tra... 30 1.7
2SYLM_SCHPO (Q09828) Putative leucyl-tRNA synthetase, mitochondri... 30 2.2
3SYLM_NEUCR (P15181) Leucyl-tRNA synthetase, mitochondrial precur... 29 2.9
4SYLM_SACDO (P13503) Leucyl-tRNA synthetase, mitochondrial precur... 28 8.4
5LEU1_RHILO (Q98HN3) 2-isopropylmalate synthase (EC 2.3.3.13) (Al... 28 8.4
6HXT5_YEAST (P38695) Probable glucose transporter HXT5 28 8.4
7HXT3_YEAST (P32466) Low-affinity glucose transporter HXT3 28 8.4

>RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose transporter 1)|
          Length = 567

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 55  SMVNW*VSFLVGKLVEFVLS--FFFFRYIFMMCLAVA 159
           S  NW   FL+G    F+ S   F++ Y+FM C+  A
Sbjct: 469 SASNWIWGFLIGFFTPFITSAIHFYYGYVFMGCMVFA 505



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>SYLM_SCHPO (Q09828) Putative leucyl-tRNA synthetase, mitochondrial precursor|
           (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS)
          Length = 874

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 141 HKNITKEKKGKNE--LYQFPYKKGHLPINHAEIFRFYESMSXY 19
           H    K  KGK +  L  FPY  G L I H  ++   + +S Y
Sbjct: 48  HYPFVKNDKGKKKYILSMFPYPSGLLHIGHVRVYTISDILSRY 90



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>SYLM_NEUCR (P15181) Leucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.4) (Leucine--tRNA ligase) (LeuRS)
          Length = 994

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 147 THHKNITKEKKGKNELYQFPYKKGHLPINHAEIFRFYESMSXY 19
           +  K   +++K K  L  FPY  GHL + H  ++   + ++ +
Sbjct: 74  SREKGNKEDEKNKYVLPMFPYPSGHLHLGHLRVYTIADVIARF 116



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>SYLM_SACDO (P13503) Leucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.4) (Leucine--tRNA ligase) (LeuRS)
          Length = 894

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 138 KNITKEKKGKNELYQFPYKKGHLPINHAEIFRFYESMSXY 19
           K  T   + K  L QFPY  G L I H  ++   +S++ +
Sbjct: 40  KQGTLNNRSKYILCQFPYPSGVLHIGHLRVYVISDSLNRF 79



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>LEU1_RHILO (Q98HN3) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 558

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 162 TSYS*THHKNITKE----KKGKNELYQFPYKKGHLPINHAEIFRFYESM 28
           T++S +H   I K     KK    L++ PY    LPI+ A++ R YE++
Sbjct: 330 TAFSGSHQDAINKGMKALKKANTSLWEVPY----LPIDPADVGRSYEAI 374



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>HXT5_YEAST (P38695) Probable glucose transporter HXT5|
          Length = 592

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 55  SMVNW*VSFLVGKLVEFVLSF--FFFRYIFMMCLAVA 159
           S  NW   FL+     F+ S   F++ Y+FM C+  A
Sbjct: 490 SACNWIWGFLISFFTPFITSAINFYYGYVFMGCMVFA 526



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>HXT3_YEAST (P32466) Low-affinity glucose transporter HXT3|
          Length = 567

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 64  NW*VSFLVGKLVEFVLSF--FFFRYIFMMCLAVA 159
           NW   FL+G    F+     F++ Y+FM C+  A
Sbjct: 469 NWLWGFLIGFFTPFITGAINFYYGYVFMGCMVFA 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,504,998
Number of Sequences: 219361
Number of extensions: 393202
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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