| Clone Name | baal2c14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119P16, full insert sequence Length = 1513 Score = 323 bits (163), Expect = 4e-85 Identities = 310/359 (86%) Strand = Plus / Plus Query: 287 gctagtcccttggacctcttccctcaagcccttccaaatgcttccacaaatgctgctggt 346 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 778 gctagtcccttggacctctttcctcaagcccttccaaatgcttccaccgatgctgctggt 837 Query: 347 gagggaaatctggatgttttgcgtaacaatgcgcagttccgaagcttactttctttagtg 406 |||||||| |||| |||||| || ||||| || ||||||| ||| |||||||||||| Sbjct: 838 ctaggaaatcttgatgctttgcgcaataatgcacaattccgaaccttgctttctttagtg 897 Query: 407 caggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccctcag 466 || || || ||||| || ||||||||| |||||||||| |||| || ||||| || ||| Sbjct: 898 caagccaatcctcaaattttacagccattgcttcaagaattggggaaacaaaatccccag 957 Query: 467 attttgcagttgattcaggacaaccaggctgagttccttcgtttaatcaatgagccagct 526 ||||||||| |||||||||| ||||| ||||||||||| | ||||||||||| |||||| Sbjct: 958 attttgcagctgattcaggaaaaccaagctgagttcctccacttaatcaatgaaccagct 1017 Query: 527 gagggcgatgaagacgagaatctcctagagcagtttgctgagggagtgcctcagaccata 586 ||||| ||||| || |||||| | ||||| |||||| | |||| | |||| ||||||||| Sbjct: 1018 gagggtgatgatgaagagaatttgctagaccagtttccagaggcaatgccacagaccata 1077 Query: 587 gctgttactcctgaggagaatgaagctatacttcgtcttgagggaatgggctttgaccg 645 || |||||||| |||||||||||||| |||||||||||||| | ||||||||||||||| Sbjct: 1078 gcagttactccagaggagaatgaagccatacttcgtcttgaagcaatgggctttgaccg 1136 Score = 155 bits (78), Expect = 2e-34 Identities = 198/238 (83%) Strand = Plus / Plus Query: 29 tcaaaccttgttgcgggaggcaccctagaggcaacaattcagtcaattcttgaaatgggc 88 |||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 511 tcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggt 570 Query: 89 ggtggaacatgggacagagatattgtgcttcgtgccctacgtgctgcattcaacaacccg 148 ||||||| |||||| ||||| |||||||| | ||| ||| | |||||||||||||||||| Sbjct: 571 ggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccg 630 Query: 149 gagcgggctgttgagtatttatattctggtattccggagccgatggagattcctgcacca 208 | | |||||||||| ||| | || |||||| |||| |||| |||||| ||||| | ||| Sbjct: 631 gggagggctgttgaatatctgtactctggtgttcctgagcagatggacattccagttcca 690 Query: 209 acaccaagtgcccagccagctgatcctgcccaggcttcactagcaactcaacctgcag 266 | || ||| |||||||| ||||| |||||||||||| ||||||||||| |||| Sbjct: 691 cctccgagtatacagccagccaatcctacccaggcttcacaggcaactcaaccagcag 748
>gb|U63530.1|OSU63530 Oryza sativa osRAD23 mRNA, complete cds Length = 1533 Score = 307 bits (155), Expect = 2e-80 Identities = 308/359 (85%) Strand = Plus / Plus Query: 287 gctagtcccttggacctcttccctcaagcccttccaaatgcttccacaaatgctgctggt 346 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 772 gctagtcccttggacctctttcctcaagcccttccaaatgcttccaccgatgctgctggt 831 Query: 347 gagggaaatctggatgttttgcgtaacaatgcgcagttccgaagcttactttctttagtg 406 |||||||| |||| |||||| || ||||| || ||||||| ||| |||||||||||| Sbjct: 832 ctaggaaatcttgatgctttgcgcaataatgcacaattccgaaccttgctttctttagtg 891 Query: 407 caggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccctcag 466 || || || ||||| || ||||||||| |||||||||| |||| || ||||| || ||| Sbjct: 892 caagccaatcctcaaattttacagccattgcttcaagaattggggaaacaaaatccccag 951 Query: 467 attttgcagttgattcaggacaaccaggctgagttccttcgtttaatcaatgagccagct 526 ||||||||| |||||||||| ||||| ||||||||||| | ||||||||||| |||||| Sbjct: 952 attttgcagctgattcaggaaaaccaagctgagttcctccacttaatcaatgaaccagct 1011 Query: 527 gagggcgatgaagacgagaatctcctagagcagtttgctgagggagtgcctcagaccata 586 ||||| ||||| || |||||| | ||||| |||||| | |||| | |||| ||||||||| Sbjct: 1012 gagggtgatgatgaagagaatttgctagaccagtttccagaggcaatgccacagaccata 1071 Query: 587 gctgttactcctgaggagaatgaagctatacttcgtcttgagggaatgggctttgaccg 645 || |||||||| |||||| ||||||| |||||||||||||| ||||||||||||||| Sbjct: 1072 gcagttactccagaggaggatgaagccatacttcgtcttgaaccaatgggctttgaccg 1130 Score = 163 bits (82), Expect = 9e-37 Identities = 199/238 (83%) Strand = Plus / Plus Query: 29 tcaaaccttgttgcgggaggcaccctagaggcaacaattcagtcaattcttgaaatgggc 88 |||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 505 tcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggt 564 Query: 89 ggtggaacatgggacagagatattgtgcttcgtgccctacgtgctgcattcaacaacccg 148 ||||||| |||||| ||||| |||||||| | ||| ||| | |||||||||||||||||| Sbjct: 565 ggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccg 624 Query: 149 gagcgggctgttgagtatttatattctggtattccggagccgatggagattcctgcacca 208 ||| |||||||||| ||| | || |||||| |||| |||| |||||| ||||| | ||| Sbjct: 625 gagagggctgttgaatatctgtactctggtgttcctgagcagatggacattccagttcca 684 Query: 209 acaccaagtgcccagccagctgatcctgcccaggcttcactagcaactcaacctgcag 266 | || ||| |||||||| ||||| |||||||||||| ||||||||||| |||| Sbjct: 685 cctccgagtatacagccagccaatcctacccaggcttcacaggcaactcaaccagcag 742
>dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full insert sequence Length = 2031 Score = 262 bits (132), Expect = 1e-66 Identities = 270/316 (85%) Strand = Plus / Plus Query: 287 gctagtcccttggacctcttccctcaagcccttccaaatgcttccacaaatgctgctggt 346 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 778 gctagtcccttggacctctttcctcaagcccttccaaatgcttccaccgatgctgctggt 837 Query: 347 gagggaaatctggatgttttgcgtaacaatgcgcagttccgaagcttactttctttagtg 406 |||||||| |||| |||||| || ||||| || ||||||| ||| |||||||||||| Sbjct: 838 ctaggaaatcttgatgctttgcgcaataatgcacaattccgaaccttgctttctttagtg 897 Query: 407 caggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccctcag 466 || || || ||||| || ||||||||| |||||||||| |||| || ||||| || ||| Sbjct: 898 caagccaatcctcaaattttacagccattgcttcaagaattggggaaacaaaatccccag 957 Query: 467 attttgcagttgattcaggacaaccaggctgagttccttcgtttaatcaatgagccagct 526 ||||||||| |||||||||| ||||| ||||||||||| | ||||||||||| |||||| Sbjct: 958 attttgcagctgattcaggaaaaccaagctgagttcctccacttaatcaatgaaccagct 1017 Query: 527 gagggcgatgaagacgagaatctcctagagcagtttgctgagggagtgcctcagaccata 586 ||||| ||||| || |||||| | ||||| |||||| | |||| | |||| ||||||||| Sbjct: 1018 gagggtgatgatgaagagaatttgctagaccagtttccagaggcaatgccacagaccata 1077 Query: 587 gctgttactcctgagg 602 || |||||||| |||| Sbjct: 1078 gcagttactccagagg 1093 Score = 163 bits (82), Expect = 9e-37 Identities = 199/238 (83%) Strand = Plus / Plus Query: 29 tcaaaccttgttgcgggaggcaccctagaggcaacaattcagtcaattcttgaaatgggc 88 |||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 511 tcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggt 570 Query: 89 ggtggaacatgggacagagatattgtgcttcgtgccctacgtgctgcattcaacaacccg 148 ||||||| |||||| ||||| |||||||| | ||| ||| | |||||||||||||||||| Sbjct: 571 ggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccg 630 Query: 149 gagcgggctgttgagtatttatattctggtattccggagccgatggagattcctgcacca 208 ||| |||||||||| ||| | || |||||| |||| |||| |||||| ||||| | ||| Sbjct: 631 gagagggctgttgaatatctgtactctggtgttcctgagcagatggacattccagttcca 690 Query: 209 acaccaagtgcccagccagctgatcctgcccaggcttcactagcaactcaacctgcag 266 | || ||| |||||||| ||||| |||||||||||| ||||||||||| |||| Sbjct: 691 cctccgagtatacagccagccaatcctacccaggcttcacaggcaactcaaccagcag 748
>ref|XM_482516.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1526 Score = 165 bits (83), Expect = 2e-37 Identities = 279/343 (81%), Gaps = 6/343 (1%) Strand = Plus / Plus Query: 275 tctggtcctaatgctagtcccttggacctcttccctcaagcccttccaaatgcttccaca 334 ||||| || ||||| | ||| |||||||| || ||||| | ||||||||||||||| || Sbjct: 806 tctggacccaatgccaatccattggacctgtttcctcaggtccttccaaatgcttctgca 865 Query: 335 aatgctgctggtgagggaaatctggatgttttgcgtaacaatgcgcagttccgaagctta 394 ||||||| ||||| ||||||| |||||| |||| |||||| | |||||||| |||| Sbjct: 866 aatgctggtggtg---gaaatcttgatgttctgcgaaacaattcacagttccgtggcttg 922 Query: 395 ctttctttagtgcaggctaaccctcagatcttacagccactgcttcaagagctgggaaag 454 |||||||| ||||||||||||||||| || | ||||| ||||||||||| |||| || Sbjct: 923 ctttctttggtgcaggctaaccctcaaattctgcagcctttgcttcaagagttggggaaa 982 Query: 455 caaaaccctcagattttgcagttgattcaggacaaccaggctgagttccttcgtttaatc 514 ||||| || ||||||||||| |||||||||| ||||||||||||||||| || |||||| Sbjct: 983 caaaatccacagattttgcaactgattcaggaaaaccaggctgagttcctgcgcttaatc 1042 Query: 515 aatgagccagctgagggcgatgaagacgagaatctcctagagcagtttgctgagggagtg 574 || || || || ||||| | |||| | ||| | ||||| |||||||||| |||| || Sbjct: 1043 aacgaacctgcagagggagctgaa---gggaacttgctagaccagtttgctgcgggaatg 1099 Query: 575 cctcagaccatagctgttactcctgaggagaatgaagctatac 617 ||||| || | ||||| || ||||||||||| ||||| |||| Sbjct: 1100 cctcaaacagtggctgtcacacctgaggagaacgaagccatac 1142 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 66 ttcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcgtgccc 125 |||||||||||||||||||||| || ||| | |||||| | || | ||| | ||||| | Sbjct: 552 ttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctc 611 Query: 126 tacgtgctgcattcaacaacccggagcgggctgttgagtattt 168 | || ||||||| |||||| || || |||||||| |||||||| Sbjct: 612 tgcgagctgcatacaacaatccagaacgggctgtggagtattt 654
>dbj|AK064881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J24, full insert sequence Length = 1526 Score = 165 bits (83), Expect = 2e-37 Identities = 279/343 (81%), Gaps = 6/343 (1%) Strand = Plus / Plus Query: 275 tctggtcctaatgctagtcccttggacctcttccctcaagcccttccaaatgcttccaca 334 ||||| || ||||| | ||| |||||||| || ||||| | ||||||||||||||| || Sbjct: 806 tctggacccaatgccaatccattggacctgtttcctcaggtccttccaaatgcttctgca 865 Query: 335 aatgctgctggtgagggaaatctggatgttttgcgtaacaatgcgcagttccgaagctta 394 ||||||| ||||| ||||||| |||||| |||| |||||| | |||||||| |||| Sbjct: 866 aatgctggtggtg---gaaatcttgatgttctgcgaaacaattcacagttccgtggcttg 922 Query: 395 ctttctttagtgcaggctaaccctcagatcttacagccactgcttcaagagctgggaaag 454 |||||||| ||||||||||||||||| || | ||||| ||||||||||| |||| || Sbjct: 923 ctttctttggtgcaggctaaccctcaaattctgcagcctttgcttcaagagttggggaaa 982 Query: 455 caaaaccctcagattttgcagttgattcaggacaaccaggctgagttccttcgtttaatc 514 ||||| || ||||||||||| |||||||||| ||||||||||||||||| || |||||| Sbjct: 983 caaaatccacagattttgcaactgattcaggaaaaccaggctgagttcctgcgcttaatc 1042 Query: 515 aatgagccagctgagggcgatgaagacgagaatctcctagagcagtttgctgagggagtg 574 || || || || ||||| | |||| | ||| | ||||| |||||||||| |||| || Sbjct: 1043 aacgaacctgcagagggagctgaa---gggaacttgctagaccagtttgctgcgggaatg 1099 Query: 575 cctcagaccatagctgttactcctgaggagaatgaagctatac 617 ||||| || | ||||| || ||||||||||| ||||| |||| Sbjct: 1100 cctcaaacagtggctgtcacacctgaggagaacgaagccatac 1142 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 66 ttcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcgtgccc 125 |||||||||||||||||||||| || ||| | |||||| | || | ||| | ||||| | Sbjct: 552 ttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctc 611 Query: 126 tacgtgctgcattcaacaacccggagcgggctgttgagtattt 168 | || ||||||| |||||| || || |||||||| |||||||| Sbjct: 612 tgcgagctgcatacaacaatccagaacgggctgtggagtattt 654
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 139 bits (70), Expect = 1e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 29 tcaaaccttgttgcgggaggcaccctagaggcaacaattcagtcaattcttgaaatgggc 88 |||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 14310621 tcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggt 14310680 Query: 89 ggtggaacatgggacagagatattgtgcttcgtgccctacgtgctgcattcaacaacccg 148 ||||||| |||||| ||||| |||||||| | ||| ||| | |||||||||||||||||| Sbjct: 14310681 ggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccg 14310740 Query: 149 gagcgggctgttga 162 ||| |||||||||| Sbjct: 14310741 gagagggctgttga 14310754 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 428 cagccactgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcaggac 487 |||||| |||||||||| |||| || ||||| || |||||||||||| |||||||||| Sbjct: 14311504 cagccattgcttcaagaattggggaaacaaaatccccagattttgcagctgattcaggaa 14311563 Query: 488 aaccaggctgagttccttcgtttaatcaatgagccagctgagggcgatga 537 ||||| ||||||||||| | ||||||||||| ||||||||||| ||||| Sbjct: 14311564 aaccaagctgagttcctccacttaatcaatgaaccagctgagggtgatga 14311613 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Plus Query: 314 gcccttccaaatgcttccacaaatgctgctggtgagggaaatctggatgttttgcgtaac 373 |||||||||||||||||||| ||||||||||| |||||||| |||| |||||| || Sbjct: 14311316 gcccttccaaatgcttccaccgatgctgctggtctaggaaatcttgatgctttgcgcaat 14311375 Query: 374 aatgcgcagttccgaagcttactttctttagtgcaggctaaccctcagatcttacag 430 ||||| || ||||||| ||| |||||||||||||| || || ||||| || |||||| Sbjct: 14311376 aatgcacaattccgaaccttgctttctttagtgcaagccaatcctcaaattttacag 14311432 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 551 ctagagcagtttgctgagggagtgcctcagaccatagctgttactcctgaggagaatgaa 610 ||||| |||||| | |||| | |||| ||||||||||| |||||||| |||||||||||| Sbjct: 14311710 ctagaccagtttccagaggcaatgccacagaccatagcagttactccagaggagaatgaa 14311769 Query: 611 gctatacttcgt 622 || ||||||||| Sbjct: 14311770 gccatacttcgt 14311781 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Plus Query: 287 gctagtcccttggacctcttccctcaag 314 |||||||||||||||||||| ||||||| Sbjct: 14311205 gctagtcccttggacctctttcctcaag 14311232 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 221 cagccagctgatcctgcccaggcttcactagcaactcaacctgcag 266 |||||||| ||||| |||||||||||| ||||||||||| |||| Sbjct: 14311130 cagccagccaatcctacccaggcttcacaggcaactcaaccagcag 14311175
>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1261_A08 Length = 162113 Score = 139 bits (70), Expect = 1e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 29 tcaaaccttgttgcgggaggcaccctagaggcaacaattcagtcaattcttgaaatgggc 88 |||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 127166 tcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggt 127225 Query: 89 ggtggaacatgggacagagatattgtgcttcgtgccctacgtgctgcattcaacaacccg 148 ||||||| |||||| ||||| |||||||| | ||| ||| | |||||||||||||||||| Sbjct: 127226 ggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccg 127285 Query: 149 gagcgggctgttga 162 ||| |||||||||| Sbjct: 127286 gagagggctgttga 127299 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 428 cagccactgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcaggac 487 |||||| |||||||||| |||| || ||||| || |||||||||||| |||||||||| Sbjct: 128049 cagccattgcttcaagaattggggaaacaaaatccccagattttgcagctgattcaggaa 128108 Query: 488 aaccaggctgagttccttcgtttaatcaatgagccagctgagggcgatga 537 ||||| ||||||||||| | ||||||||||| ||||||||||| ||||| Sbjct: 128109 aaccaagctgagttcctccacttaatcaatgaaccagctgagggtgatga 128158 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Plus Query: 314 gcccttccaaatgcttccacaaatgctgctggtgagggaaatctggatgttttgcgtaac 373 |||||||||||||||||||| ||||||||||| |||||||| |||| |||||| || Sbjct: 127861 gcccttccaaatgcttccaccgatgctgctggtctaggaaatcttgatgctttgcgcaat 127920 Query: 374 aatgcgcagttccgaagcttactttctttagtgcaggctaaccctcagatcttacag 430 ||||| || ||||||| ||| |||||||||||||| || || ||||| || |||||| Sbjct: 127921 aatgcacaattccgaaccttgctttctttagtgcaagccaatcctcaaattttacag 127977 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 551 ctagagcagtttgctgagggagtgcctcagaccatagctgttactcctgaggagaatgaa 610 ||||| |||||| | |||| | |||| ||||||||||| |||||||| |||||||||||| Sbjct: 128255 ctagaccagtttccagaggcaatgccacagaccatagcagttactccagaggagaatgaa 128314 Query: 611 gctatacttcgt 622 || ||||||||| Sbjct: 128315 gccatacttcgt 128326 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Plus Query: 287 gctagtcccttggacctcttccctcaag 314 |||||||||||||||||||| ||||||| Sbjct: 127750 gctagtcccttggacctctttcctcaag 127777 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 221 cagccagctgatcctgcccaggcttcactagcaactcaacctgcag 266 |||||||| ||||| |||||||||||| ||||||||||| |||| Sbjct: 127675 cagccagccaatcctacccaggcttcacaggcaactcaaccagcag 127720
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 139 bits (70), Expect = 1e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 29 tcaaaccttgttgcgggaggcaccctagaggcaacaattcagtcaattcttgaaatgggc 88 |||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 2424 tcaaaccttgttgctggcagcaatctagaggcaacaattcaatcaattcttgaaatgggt 2483 Query: 89 ggtggaacatgggacagagatattgtgcttcgtgccctacgtgctgcattcaacaacccg 148 ||||||| |||||| ||||| |||||||| | ||| ||| | |||||||||||||||||| Sbjct: 2484 ggtggaatatgggatagagacattgtgctgcatgctctaagcgctgcattcaacaacccg 2543 Query: 149 gagcgggctgttga 162 ||| |||||||||| Sbjct: 2544 gagagggctgttga 2557 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 428 cagccactgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcaggac 487 |||||| |||||||||| |||| || ||||| || |||||||||||| |||||||||| Sbjct: 3307 cagccattgcttcaagaattggggaaacaaaatccccagattttgcagctgattcaggaa 3366 Query: 488 aaccaggctgagttccttcgtttaatcaatgagccagctgagggcgatga 537 ||||| ||||||||||| | ||||||||||| ||||||||||| ||||| Sbjct: 3367 aaccaagctgagttcctccacttaatcaatgaaccagctgagggtgatga 3416 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Plus Query: 314 gcccttccaaatgcttccacaaatgctgctggtgagggaaatctggatgttttgcgtaac 373 |||||||||||||||||||| ||||||||||| |||||||| |||| |||||| || Sbjct: 3119 gcccttccaaatgcttccaccgatgctgctggtctaggaaatcttgatgctttgcgcaat 3178 Query: 374 aatgcgcagttccgaagcttactttctttagtgcaggctaaccctcagatcttacag 430 ||||| || ||||||| ||| |||||||||||||| || || ||||| || |||||| Sbjct: 3179 aatgcacaattccgaaccttgctttctttagtgcaagccaatcctcaaattttacag 3235 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 551 ctagagcagtttgctgagggagtgcctcagaccatagctgttactcctgaggagaatgaa 610 ||||| |||||| | |||| | |||| ||||||||||| |||||||| |||||||||||| Sbjct: 3513 ctagaccagtttccagaggcaatgccacagaccatagcagttactccagaggagaatgaa 3572 Query: 611 gctatacttcgt 622 || ||||||||| Sbjct: 3573 gccatacttcgt 3584 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Plus Query: 287 gctagtcccttggacctcttccctcaag 314 |||||||||||||||||||| ||||||| Sbjct: 3008 gctagtcccttggacctctttcctcaag 3035 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 221 cagccagctgatcctgcccaggcttcactagcaactcaacctgcag 266 |||||||| ||||| |||||||||||| ||||||||||| |||| Sbjct: 2933 cagccagccaatcctacccaggcttcacaggcaactcaaccagcag 2978
>gb|BT016993.1| Zea mays clone EK07D2305C08.c mRNA sequence Length = 989 Score = 91.7 bits (46), Expect = 3e-15 Identities = 166/206 (80%) Strand = Plus / Plus Query: 61 aacaattcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcg 120 ||||||||| || |||||||||||||| || || | |||||||||||| | ||| || || Sbjct: 72 aacaattcaatccattcttgaaatgggtggcgggatatgggacagagacactgtactacg 131 Query: 121 tgccctacgtgctgcattcaacaacccggagcgggctgttgagtatttatattctggtat 180 |||||| || | ||| | |||||||| ||||| ||||||||||| ||||||||||| || Sbjct: 132 tgccctgcgggttgcgtataacaacccagagcgcgctgttgagtacttatattctgggat 191 Query: 181 tccggagccgatggagattcctgcaccaacaccaagtgcccagccagctgatcctgccca 240 ||| || | ||||| ||||| || || | || ||| ||||||||| |||||| ||| Sbjct: 192 tcctgaacaaatggatgttcctacatcagctccgagtatccagccagccaatcctgtcca 251 Query: 241 ggcttcactagcaactcaacctgcag 266 |||| ||| |||| ||||| |||||| Sbjct: 252 ggctgcacaagcagctcaaactgcag 277 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 579 agaccatagctgttactcctgaggagaatgaagctatacttcgtcttgagggaatgggct 638 ||||||| || || ||||| |||||||| |||||||||||||||||||| || ||||||| Sbjct: 584 agaccattgcagtgactccagaggagaacgaagctatacttcgtcttgaagggatgggct 643 Query: 639 ttgaccggg 647 ||||||||| Sbjct: 644 ttgaccggg 652 Score = 46.1 bits (23), Expect = 0.14 Identities = 80/99 (80%) Strand = Plus / Plus Query: 404 gtgcaggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccct 463 ||||||||||| |||||||| || |||||| |||| ||||| |||| || ||||| || Sbjct: 409 gtgcaggctaatcctcagattttgcagccattgctgcaagaattgggtaaacaaaatccc 468 Query: 464 cagattttgcagttgattcaggacaaccaggctgagttc 502 ||| || ||||| | || ||||| ||||| || |||||| Sbjct: 469 caggttatgcagctaatccaggaaaaccaagcagagttc 507
>dbj|AK066105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052E24, full insert sequence Length = 442 Score = 91.7 bits (46), Expect = 3e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 580 gaccatagctgttactcctgaggagaatgaagctatacttcgtcttgagggaatgggctt 639 ||||||||| |||||||| |||||||||||||| |||||||||||||| | ||||||||| Sbjct: 1 gaccatagcagttactccagaggagaatgaagccatacttcgtcttgaagcaatgggctt 60 Query: 640 tgaccg 645 |||||| Sbjct: 61 tgaccg 66
>gb|BT017634.1| Zea mays clone EL01N0437H07.c mRNA sequence Length = 819 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Minus Query: 401 ttagtgcaggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaac 460 ||||| |||||||| ||||| ||||| |||||| ||||||||||||| || || |||||| Sbjct: 544 ttagtccaggctaatcctcaaatcttgcagccaatgcttcaagagctaggtaaacaaaac 485 Query: 461 cctcagattttgcagttgattcaggacaaccaggctgagtt 501 || || ||||||| |||||||||||| || || |||||||| Sbjct: 484 ccccaaattttgcggttgattcaggaaaatcaagctgagtt 444
>dbj|AK063768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B09, full insert sequence Length = 621 Score = 89.7 bits (45), Expect = 1e-14 Identities = 149/183 (81%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 435 tgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcaggacaaccagg 494 ||||||||||| |||| || ||||| || ||||||||||| |||||||||| ||||||| Sbjct: 4 tgcttcaagagttggggaaacaaaatccacagattttgcaactgattcaggaaaaccagg 63 Query: 495 ctgagttccttcgtttaatcaatgagccagctgagggcgatgaagacgagaatctcctag 554 |||||||||| || |||||||| || || || ||||| | |||| | ||| | |||| Sbjct: 64 ctgagttcctgcgcttaatcaacgaacctgcagagggagctgaa---gggaacttgctag 120 Query: 555 agcagtttgctgagggagtgcctcagaccatagctgttactcctgaggagaatgaagcta 614 | |||||||||| |||| ||||||| || | ||||| || ||||||||||| ||||| | Sbjct: 121 accagtttgctgcgggaatgcctcaaacagtggctgtcacacctgaggagaacgaagcca 180 Query: 615 tac 617 ||| Sbjct: 181 tac 183
>gb|AY106748.1| Zea mays PCO104379 mRNA sequence Length = 779 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 579 agaccatagctgttactcctgaggagaatgaagctatacttcgtcttgagggaatgggct 638 ||||||| || || ||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct: 377 agaccattgcagtcactccagaggagaatgaagctatacttcgtcttgaagggatgggct 436 Query: 639 ttgaccggg 647 ||||||||| Sbjct: 437 ttgaccggg 445 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 350 ggaaatctggatgttttgcgtaacaatgcgcagttccgaagcttactttctttagtgcag 409 |||||||| |||||||||||||| || | ||||||| || | ||||| ||| || ||| Sbjct: 148 ggaaatcttgatgttttgcgtaataactcacagttccaaaacctacttggtttggttcag 207 Query: 410 gctaaccctcagatcttacagccactgcttcaaga 444 ||||||||||| || || |||||| |||||||||| Sbjct: 208 gctaaccctcaaattttgcagccattgcttcaaga 242
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 85.7 bits (43), Expect = 2e-13 Identities = 90/105 (85%), Gaps = 3/105 (2%) Strand = Plus / Plus Query: 316 ccttccaaatgcttccacaaatgctgctggtgagggaaatctggatgttttgcgtaacaa 375 ||||||||||||||| ||||||||| ||||| ||||||| |||||| |||| ||||| Sbjct: 20793438 ccttccaaatgcttctgcaaatgctggtggtg---gaaatcttgatgttctgcgaaacaa 20793494 Query: 376 tgcgcagttccgaagcttactttctttagtgcaggctaaccctca 420 | | |||||||| |||| |||||||| ||||||||||||||||| Sbjct: 20793495 ttcacagttccgtggcttgctttctttggtgcaggctaaccctca 20793539 Score = 83.8 bits (42), Expect = 7e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 435 tgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcaggacaaccagg 494 ||||||||||| |||| || ||||| || ||||||||||| |||||||||| ||||||| Sbjct: 20793631 tgcttcaagagttggggaaacaaaatccacagattttgcaactgattcaggaaaaccagg 20793690 Query: 495 ctgagttccttcgtttaatcaa 516 |||||||||| || |||||||| Sbjct: 20793691 ctgagttcctgcgcttaatcaa 20793712 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 66 ttcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcgtgccc 125 |||||||||||||||||||||| || ||| | |||||| | || | ||| | ||||| | Sbjct: 20792671 ttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctc 20792730 Query: 126 tacgtgctgcattcaacaacccggagcgggctgttgagtattt 168 | || ||||||| |||||| || || |||||||| |||||||| Sbjct: 20792731 tgcgagctgcatacaacaatccagaacgggctgtggagtattt 20792773 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Plus Query: 551 ctagagcagtttgctgagggagtgcctcagaccatagctgttactcctgaggagaatgaa 610 ||||| |||||||||| |||| ||||||| || | ||||| || ||||||||||| ||| Sbjct: 20793833 ctagaccagtttgctgcgggaatgcctcaaacagtggctgtcacacctgaggagaacgaa 20793892 Query: 611 gctatac 617 || |||| Sbjct: 20793893 gccatac 20793899
>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1124_B05 Length = 109917 Score = 85.7 bits (43), Expect = 2e-13 Identities = 90/105 (85%), Gaps = 3/105 (2%) Strand = Plus / Plus Query: 316 ccttccaaatgcttccacaaatgctgctggtgagggaaatctggatgttttgcgtaacaa 375 ||||||||||||||| ||||||||| ||||| ||||||| |||||| |||| ||||| Sbjct: 24571 ccttccaaatgcttctgcaaatgctggtggtg---gaaatcttgatgttctgcgaaacaa 24627 Query: 376 tgcgcagttccgaagcttactttctttagtgcaggctaaccctca 420 | | |||||||| |||| |||||||| ||||||||||||||||| Sbjct: 24628 ttcacagttccgtggcttgctttctttggtgcaggctaaccctca 24672 Score = 83.8 bits (42), Expect = 7e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 435 tgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcaggacaaccagg 494 ||||||||||| |||| || ||||| || ||||||||||| |||||||||| ||||||| Sbjct: 24764 tgcttcaagagttggggaaacaaaatccacagattttgcaactgattcaggaaaaccagg 24823 Query: 495 ctgagttccttcgtttaatcaa 516 |||||||||| || |||||||| Sbjct: 24824 ctgagttcctgcgcttaatcaa 24845 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 66 ttcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcgtgccc 125 |||||||||||||||||||||| || ||| | |||||| | || | ||| | ||||| | Sbjct: 23804 ttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctc 23863 Query: 126 tacgtgctgcattcaacaacccggagcgggctgttgagtattt 168 | || ||||||| |||||| || || |||||||| |||||||| Sbjct: 23864 tgcgagctgcatacaacaatccagaacgggctgtggagtattt 23906 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Plus Query: 551 ctagagcagtttgctgagggagtgcctcagaccatagctgttactcctgaggagaatgaa 610 ||||| |||||||||| |||| ||||||| || | ||||| || ||||||||||| ||| Sbjct: 24966 ctagaccagtttgctgcgggaatgcctcaaacagtggctgtcacacctgaggagaacgaa 25025 Query: 611 gctatac 617 || |||| Sbjct: 25026 gccatac 25032
>gb|AY108517.1| Zea mays PCO104380 mRNA sequence Length = 837 Score = 85.7 bits (43), Expect = 2e-13 Identities = 121/147 (82%) Strand = Plus / Plus Query: 61 aacaattcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcg 120 ||||||| | || |||||||||||||| || || |||||||| ||||| | ||| || || Sbjct: 575 aacaattaaatccattcttgaaatgggtggcgggacatgggatagagacactgtactacg 634 Query: 121 tgccctacgtgctgcattcaacaacccggagcgggctgttgagtatttatattctggtat 180 ||| || || ||||| | |||||| || ||||| ||||||||||| ||||||||||| || Sbjct: 635 tgctctgcgggctgcgtacaacaatccagagcgtgctgttgagtacttatattctgggat 694 Query: 181 tccggagccgatggagattcctgcacc 207 ||| || | |||||| |||||||||| Sbjct: 695 tcctgaacaaatggaggttcctgcacc 721
>gb|AY108301.1| Zea mays PCO104381 mRNA sequence Length = 1521 Score = 85.7 bits (43), Expect = 2e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 61 aacaattcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcg 120 ||||||||| || |||||||||||||| || || | |||||||||||| | ||| || || Sbjct: 611 aacaattcaatccattcttgaaatgggtggcgggatatgggacagagacactgtactacg 670 Query: 121 tgccctacgtgctgcattcaacaacccggagcgggctgttgagtatttatattctggtat 180 |||||| || | ||| | |||||||| ||||| ||||||||||| ||||||||||| || Sbjct: 671 tgccctgcgggttgcgtataacaacccagagcgcgctgttgagtacttatattctgggat 730 Query: 181 tcc 183 ||| Sbjct: 731 tcc 733 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 579 agaccatagctgttactcctgaggagaatgaagctatacttcgtcttgagggaatgggct 638 ||||||| || || ||||| |||||||| |||||||||||||||||||| || ||||||| Sbjct: 1123 agaccattgcagtgactccagaggagaacgaagctatacttcgtcttgaagggatgggct 1182 Query: 639 ttgaccggg 647 ||||||||| Sbjct: 1183 ttgaccggg 1191 Score = 54.0 bits (27), Expect = 6e-04 Identities = 81/99 (81%) Strand = Plus / Plus Query: 404 gtgcaggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccct 463 ||||||||||| |||||||| || |||||| |||||||||| |||| || ||||| || Sbjct: 948 gtgcaggctaatcctcagattttgcagccattgcttcaagaattgggtaaacaaaatccc 1007 Query: 464 cagattttgcagttgattcaggacaaccaggctgagttc 502 ||| || ||||| | || ||||| ||||| || |||||| Sbjct: 1008 caggttatgcagctaatccaggaaaaccaagcagagttc 1046
>gb|AY103604.1| Zea mays PCO142082 mRNA sequence Length = 1672 Score = 81.8 bits (41), Expect = 3e-12 Identities = 86/101 (85%) Strand = Plus / Plus Query: 401 ttagtgcaggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaac 460 ||||| |||||||| ||||| ||||| |||||| ||||||||||||| || || |||||| Sbjct: 1000 ttagtccaggctaatcctcaaatcttgcagccaatgcttcaagagctaggtaaacaaaac 1059 Query: 461 cctcagattttgcagttgattcaggacaaccaggctgagtt 501 || || ||| ||| |||||||||||| || || |||||||| Sbjct: 1060 ccacaaattctgcggttgattcaggaaaatcaagctgagtt 1100 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 73 aattcttgaaatgggcggtggaacatgggacagagatattgtgcttcgtgccctacgtgc 132 ||||||||| ||||| ||||| |||||||| | |||| ||| ||||||| |||||||| Sbjct: 627 aattcttgacatgggtggtggtacatgggaacgtgatactgttgttcgtgctctacgtgc 686 Query: 133 tgcattcaacaaccc 147 ||||| ||| ||||| Sbjct: 687 tgcatacaataaccc 701
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 61 aacaattcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcg 120 ||||||||| || |||||||||||||| || || |||||||||||||| | ||| || || Sbjct: 109019 aacaattcaatccattcttgaaatgggtggcgggacatgggacagagacactgtactacg 108960 Query: 121 tgccctacgtgctgcattcaacaacccggagcgggctgttgagtatttatattctg 176 ||| || || ||||| | ||||| || ||||| ||||||||||| |||||||||| Sbjct: 108959 tgctctgcgggctgcctataacaatccagagcgtgctgttgagtacttatattctg 108904 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Minus Query: 579 agaccatagctgttactcctgaggagaatgaagctatacttcgt 622 ||||||| || || ||||| |||||||| ||||||||||||||| Sbjct: 107945 agaccattgcagtcactccagaggagaacgaagctatacttcgt 107902 Score = 42.1 bits (21), Expect = 2.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 359 gatgttttgcgtaacaatgcgcagttccgaagcttactttctttagtgcaggctaaccct 418 |||||||||||||| || || || |||| || | | ||| ||| ||||||||||||||| Sbjct: 108385 gatgttttgcgtaataacgcccaattccaaaacctgcttggtttggtgcaggctaaccct 108326 Query: 419 cagat 423 ||||| Sbjct: 108325 cagat 108321
>dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B07, full insert sequence Length = 1629 Score = 63.9 bits (32), Expect = 6e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 407 caggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccctcag 466 |||||||| || || ||||| |||||| ||||||||||||| || ||||| || || || Sbjct: 1050 caggctaatccccaaatcttgcagccaatgcttcaagagcttgggaagcagaatccgcaa 1109 Query: 467 attttgcagttgattcaggacaaccaggctga 498 || |||| |||||||||||| || |||||||| Sbjct: 1110 atcttgcggttgattcaggaaaatcaggctga 1141
>dbj|AK062241.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E09, full insert sequence Length = 726 Score = 63.9 bits (32), Expect = 6e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 407 caggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccctcag 466 |||||||| || || ||||| |||||| ||||||||||||| || ||||| || || || Sbjct: 147 caggctaatccccaaatcttgcagccaatgcttcaagagcttgggaagcagaatccgcaa 206 Query: 467 attttgcagttgattcaggacaaccaggctga 498 || |||| |||||||||||| || |||||||| Sbjct: 207 atcttgcggttgattcaggaaaatcaggctga 238
>dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C08, full insert sequence Length = 1567 Score = 63.9 bits (32), Expect = 6e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 407 caggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccctcag 466 |||||||| || || ||||| |||||| ||||||||||||| || ||||| || || || Sbjct: 1015 caggctaatccccaaatcttgcagccaatgcttcaagagcttgggaagcagaatccgcaa 1074 Query: 467 attttgcagttgattcaggacaaccaggctga 498 || |||| |||||||||||| || |||||||| Sbjct: 1075 atcttgcggttgattcaggaaaatcaggctga 1106
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 427 acagccactgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcagga 486 ||||||| ||||||||||||| || ||||| || || || || |||| |||||||||||| Sbjct: 8736443 acagccaatgcttcaagagcttgggaagcagaatccgcaaatcttgcggttgattcagga 8736502 Query: 487 caaccaggctga 498 || |||||||| Sbjct: 8736503 aaatcaggctga 8736514
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1001_B06 Length = 134810 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 427 acagccactgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcagga 486 ||||||| ||||||||||||| || ||||| || || || || |||| |||||||||||| Sbjct: 6764 acagccaatgcttcaagagcttgggaagcagaatccgcaaatcttgcggttgattcagga 6823 Query: 487 caaccaggctga 498 || |||||||| Sbjct: 6824 aaatcaggctga 6835
>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0037N01 Length = 174085 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 427 acagccactgcttcaagagctgggaaagcaaaaccctcagattttgcagttgattcagga 486 ||||||| ||||||||||||| || ||||| || || || || |||| |||||||||||| Sbjct: 151425 acagccaatgcttcaagagcttgggaagcagaatccgcaaatcttgcggttgattcagga 151484 Query: 487 caaccaggctga 498 || |||||||| Sbjct: 151485 aaatcaggctga 151496
>gb|AY108395.1| Zea mays PCO142081 mRNA sequence Length = 1776 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 407 caggctaaccctcagatcttacagccactgcttcaagagctgggaaagcaaaaccctcag 466 |||||||| ||||| ||||| |||||| |||||||||| || || || |||||||| || Sbjct: 1024 caggctaatcctcaaatcttgcagccaatgcttcaagaactaggcaaacaaaacccacaa 1083 Query: 467 attttgcagttgattcaggacaaccaggctgagtt 501 || ||| ||||||||||| || || |||||||| Sbjct: 1084 atcctgcgtttgattcaggaaaatcaagctgagtt 1118
>ref|XM_465524.1| Oryza sativa (japonica cultivar-group), mRNA Length = 333 Score = 48.1 bits (24), Expect = 0.036 Identities = 90/112 (80%) Strand = Plus / Plus Query: 66 ttcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcgtgccc 125 |||||||||||||||||||||| || ||| | |||||| | || | ||| | ||||| | Sbjct: 137 ttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctc 196 Query: 126 tacgtgctgcattcaacaacccggagcgggctgttgagtatttatattctgg 177 | | ||||||| |||||| || || |||||||| |||||||| ||| |||| Sbjct: 197 tgggagctgcatacaacaatccagaacgggctgtggagtatttgtatactgg 248
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Plus Query: 475 gttgattcaggacaaccaggctgagttccttcgtttaatcaatgagcc 522 |||||||||||| ||||| | ||||||||||| ||||| |||||||| Sbjct: 4411698 gttgattcaggagaaccatgatgagttccttcagttaataaatgagcc 4411745 Score = 46.1 bits (23), Expect = 0.14 Identities = 83/103 (80%) Strand = Plus / Plus Query: 66 ttcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcgtgccc 125 |||||||||||||||||||||| || ||| | |||||| | || | ||| | ||||| | Sbjct: 15727561 ttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctc 15727620 Query: 126 tacgtgctgcattcaacaacccggagcgggctgttgagtattt 168 | | ||||||| |||||| || || |||||||| |||||||| Sbjct: 15727621 tgggagctgcatacaacaatccagaacgggctgtggagtattt 15727663
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Plus Query: 475 gttgattcaggacaaccaggctgagttccttcgtttaatcaatgagcc 522 |||||||||||| ||||| | ||||||||||| ||||| |||||||| Sbjct: 95262 gttgattcaggagaaccatgatgagttccttcagttaataaatgagcc 95309
>dbj|AK104908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H06, full insert sequence Length = 1179 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Plus Query: 475 gttgattcaggacaaccaggctgagttccttcgtttaatcaatgagcc 522 |||||||||||| ||||| | ||||||||||| ||||| |||||||| Sbjct: 644 gttgattcaggagaaccatgatgagttccttcagttaataaatgagcc 691
>dbj|AK069065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007H17, full insert sequence Length = 1675 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Plus Query: 475 gttgattcaggacaaccaggctgagttccttcgtttaatcaatgagcc 522 |||||||||||| ||||| | ||||||||||| ||||| |||||||| Sbjct: 1091 gttgattcaggagaaccatgatgagttccttcagttaataaatgagcc 1138
>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24 Length = 176446 Score = 46.1 bits (23), Expect = 0.14 Identities = 83/103 (80%) Strand = Plus / Plus Query: 66 ttcagtcaattcttgaaatgggcggtggaacatgggacagagatattgtgcttcgtgccc 125 |||||||||||||||||||||| || ||| | |||||| | || | ||| | ||||| | Sbjct: 136248 ttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctc 136307 Query: 126 tacgtgctgcattcaacaacccggagcgggctgttgagtattt 168 | | ||||||| |||||| || || |||||||| |||||||| Sbjct: 136308 tgggagctgcatacaacaatccagaacgggctgtggagtattt 136350
>gb|AC006341.2|F3O9 Arabidopsis thaliana chromosome 1 BAC F3O9 sequence, complete sequence Length = 114498 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Plus Query: 425 ttacagccactgcttcaagagctgggaaagcaaaaccc 462 |||||||| ||||||||||||| |||||||| ||||| Sbjct: 347 ttacagcctatgcttcaagagctcggaaagcagaaccc 384
>ref|XM_960056.1| Neurospora crassa OR74A hypothetical protein (NCU00956.1) partial mRNA Length = 1122 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 gcttcaagagctgggaaagca 456 ||||||||||||||||||||| Sbjct: 374 gcttcaagagctgggaaagca 394
>ref|XM_325135.1| Neurospora crassa OR74A hypothetical protein (NCU00956.1) partial mRNA Length = 1122 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 gcttcaagagctgggaaagca 456 ||||||||||||||||||||| Sbjct: 374 gcttcaagagctgggaaagca 394
>gb|AC118639.12| Mus musculus chromosome 15, clone RP24-112I4, complete sequence Length = 166053 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 ccactgcttcaagagctggga 451 ||||||||||||||||||||| Sbjct: 62867 ccactgcttcaagagctggga 62887
>gb|AC122389.2| Mus musculus BAC clone RP24-80N23 from 16, complete sequence Length = 217046 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 aggcaacaattcagtcaattc 77 ||||||||||||||||||||| Sbjct: 131583 aggcaacaattcagtcaattc 131603
>emb|BX842629.1| Neurospora crassa DNA linkage group I BAC contig B20J13 Length = 126048 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 gcttcaagagctgggaaagca 456 ||||||||||||||||||||| Sbjct: 25157 gcttcaagagctgggaaagca 25177
>gb|AC091203.3| Drosophila melanogaster 3L BAC RP98-48N8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 176929 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 gtgcccagccagctgatcctg 236 ||||||||||||||||||||| Sbjct: 109531 gtgcccagccagctgatcctg 109511
>gb|AE003552.4| Drosophila melanogaster chromosome 3L, section 33 of 83 of the complete sequence Length = 286770 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 gtgcccagccagctgatcctg 236 ||||||||||||||||||||| Sbjct: 108896 gtgcccagccagctgatcctg 108876
>ref|NM_101486.1| Arabidopsis thaliana damaged DNA binding AT1G16190 mRNA, complete cds Length = 1107 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 tgcttcaagagctgggaaagcaaaaccc 462 ||||||||||||| |||||||| ||||| Sbjct: 800 tgcttcaagagctcggaaagcagaaccc 827
>ref|XM_418952.1| PREDICTED: Gallus gallus similar to solute carrier family 35, member B3; CGI-19 protein; chromosome 6 open reading frame 196 (LOC420863), mRNA Length = 1624 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ttgcagttgattcaggacaa 489 |||||||||||||||||||| Sbjct: 295 ttgcagttgattcaggacaa 314
>gb|BT014228.1| Lycopersicon esculentum clone 133425R, mRNA sequence Length = 1684 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 ccaacaccaagtgcccagcc 225 |||||||||||||||||||| Sbjct: 663 ccaacaccaagtgcccagcc 644
>gb|AC122423.2| Mus musculus BAC clone RP24-171N18 from 7, complete sequence Length = 141166 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cttccacaaatgctgctggt 346 |||||||||||||||||||| Sbjct: 108175 cttccacaaatgctgctggt 108156
>gb|AC110374.3| Mus musculus BAC clone RP23-293P18 from 15, complete sequence Length = 199869 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 ttccaaatgcttccacaaat 337 |||||||||||||||||||| Sbjct: 95300 ttccaaatgcttccacaaat 95281
>ref|XM_855892.1| PREDICTED: Canis familiaris similar to Very low-density lipoprotein receptor precursor (VLDL receptor), transcript variant 2 (LOC476336), mRNA Length = 2867 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 acaccaagtgcccagccagc 228 |||||||||||||||||||| Sbjct: 344 acaccaagtgcccagccagc 363
>ref|XM_533538.2| PREDICTED: Canis familiaris similar to Very low-density lipoprotein receptor precursor (VLDL receptor), transcript variant 1 (LOC476336), mRNA Length = 3331 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 acaccaagtgcccagccagc 228 |||||||||||||||||||| Sbjct: 808 acaccaagtgcccagccagc 827
>gb|AC164158.3| Mus musculus BAC clone RP24-263G24 from chromosome 7, complete sequence Length = 200983 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cttccacaaatgctgctggt 346 |||||||||||||||||||| Sbjct: 92210 cttccacaaatgctgctggt 92191
>emb|AL353748.13| Human DNA sequence from clone RP11-317B17 on chromosome 9 Contains the SPIN gene for spindlin, a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene and a CpG island, complete sequence Length = 179155 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctcctctggtcctaatgct 289 |||||||||||||||||||| Sbjct: 42401 cctcctctggtcctaatgct 42420
>gb|AC096781.6| Oryza sativa chromosome 10 BAC OSJNBa0013H08 genomic sequence, complete sequence Length = 58293 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 aaatgggcggtggaacatgg 100 |||||||||||||||||||| Sbjct: 1850 aaatgggcggtggaacatgg 1869
>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete sequence Length = 149978 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 aaatgggcggtggaacatgg 100 |||||||||||||||||||| Sbjct: 8245 aaatgggcggtggaacatgg 8226
>dbj|AK051877.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230014J10 product:unclassifiable, full insert sequence Length = 1555 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ctaaccctcagatcttacag 430 |||||||||||||||||||| Sbjct: 860 ctaaccctcagatcttacag 879
>gb|AC139197.10| Mus musculus chromosome 15, clone RP24-119N11, complete sequence Length = 172693 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ctaaccctcagatcttacag 430 |||||||||||||||||||| Sbjct: 95034 ctaaccctcagatcttacag 95053
>emb|BX950713.2| Gallus gallus finished cDNA, clone ChEST64l19 Length = 1376 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ttgcagttgattcaggacaa 489 |||||||||||||||||||| Sbjct: 49 ttgcagttgattcaggacaa 68
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 aaatgggcggtggaacatgg 100 |||||||||||||||||||| Sbjct: 16390146 aaatgggcggtggaacatgg 16390127
>gb|AC009120.8|AC009120 Homo sapiens chromosome 16 clone RP11-484E3, complete sequence Length = 195342 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 aagcaaaaccctcagatttt 471 |||||||||||||||||||| Sbjct: 117666 aagcaaaaccctcagatttt 117685
>emb|BX842511.1|CNS0AC9X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZF02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1334 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 tgcttcaagagctgggaaagcaaaaccc 462 ||||||||||||| |||||||| ||||| Sbjct: 820 tgcttcaagagctcggaaagcagaaccc 847
>emb|BX842499.1|CNS0ABLG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH44ZG01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1354 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 tgcttcaagagctgggaaagcaaaaccc 462 ||||||||||||| |||||||| ||||| Sbjct: 867 tgcttcaagagctcggaaagcagaaccc 894
>gb|AF472584.1| Sardinella aurita cytochrome b (cytb) gene, complete cds; mitochondrial gene for mitochondrial product Length = 1141 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 ctggtcctaatgctagtccc 295 |||||||||||||||||||| Sbjct: 895 ctggtcctaatgctagtccc 914
>dbj|AB109195.1| Arabidopsis thaliana AtRAD23-2 mRNA for RAD23-like protein, complete cds Length = 1101 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 tgcttcaagagctgggaaagcaaaaccc 462 ||||||||||||| |||||||| ||||| Sbjct: 794 tgcttcaagagctcggaaagcagaaccc 821
>emb|AL772198.14| Zebrafish DNA sequence from clone CH211-194D6 in linkage group 9, complete sequence Length = 211682 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 cttccacaaatgctgctggt 346 |||||||||||||||||||| Sbjct: 62734 cttccacaaatgctgctggt 62753
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 429 agccactgcttcaagagctgggaaagcaaaaccctc 464 ||||| ||||||||||||||| ||| |||| ||||| Sbjct: 700013 agccattgcttcaagagctggcaaaccaaagccctc 699978
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 429 agccactgcttcaagagctgggaaagcaaaaccctc 464 ||||| ||||||||||||||| ||| |||| ||||| Sbjct: 1254352 agccattgcttcaagagctggcaaaccaaagccctc 1254387
>gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, complete sequence Length = 184206 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ctagcaactcaacctgcagt 267 |||||||||||||||||||| Sbjct: 94818 ctagcaactcaacctgcagt 94799
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 aaatgggcggtggaacatgg 100 |||||||||||||||||||| Sbjct: 16398387 aaatgggcggtggaacatgg 16398368
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tgcaccaacaccaagtgccc 221 |||||||||||||||||||| Sbjct: 568243 tgcaccaacaccaagtgccc 568224
>gb|M27273.1|ECORAF E.coli rafA, rafB, and rafD genes encoding alpha-D-galactosidase, raf-permease, and raf-invertase, complete cds Length = 5284 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 atcctgcccaggcttcacta 250 |||||||||||||||||||| Sbjct: 4466 atcctgcccaggcttcacta 4447 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,457,070 Number of Sequences: 3902068 Number of extensions: 5457070 Number of successful extensions: 102224 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 101909 Number of HSP's gapped (non-prelim): 311 length of query: 647 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 624 effective length of database: 17,143,297,704 effective search space: 10697417767296 effective search space used: 10697417767296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)