>ref|XM_472665.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 654

 Score =  170 bits (86), Expect = 3e-39
 Identities = 212/254 (83%)
 Strand = Plus / Plus

                                                                       
Query: 292 ttgttgcgatacctatttacagaaagataagagcactggaagataaggtggagaagacgg 351
           ||||||| ||||| || |||||||||||||||||| ||||||| |  ||||||||||| |
Sbjct: 344 ttgttgctatacccatctacagaaagataagagcattggaagacaccgtggagaagacag 403

                                                                       
Query: 352 cagaggtggcggtcgaggtaatcgacacggtggccgaagctgccgagaaagtcgccggcg 411
           | ||||| ||  |||||||  ||||||||||||| || ||  | ||||| ||||||||||
Sbjct: 404 cggaggtagcaatcgaggtggtcgacacggtggcggaggcgactgagaaggtcgccggcg 463

                                                                       
Query: 412 aggtggccgaggcgtttcccgaaaatgaagggctcaaggaggcagcatccaggatcaaga 471
           || ||||||| || |||||||  || |||   ||||||||||  || |||| ||| ||||
Sbjct: 464 agctggccgacgcttttcccggcaacgaaaatctcaaggaggttgcctccaagattaaga 523

                                                                       
Query: 472 ccgtcgccgatgcgatcgaggaggacgccgagaaagccgaggcactaatccataaggttg 531
           |||| ||||||| ||| ||||| || ||||||||||||||||| |||||||| |||||||
Sbjct: 524 ccgtagccgatgtgatagaggatgatgccgagaaagccgaggccctaatccagaaggttg 583

                         
Query: 532 atgagataacgaaa 545
           ||||||||| ||||
Sbjct: 584 atgagataaagaaa 597



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 232 gaggaaatctccctgtgcccaacatgccttcatg 265
           ||||||||||||| || |||| ||||||||||||
Sbjct: 221 gaggaaatctcccagtacccagcatgccttcatg 254

>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
             complete sequence
          Length = 175698

 Score =  111 bits (56), Expect = 2e-21
 Identities = 158/192 (82%)
 Strand = Plus / Plus

                                                                         
Query: 339   gtggagaagacggcagaggtggcggtcgaggtaatcgacacggtggccgaagctgccgag 398
             ||||||||||| || ||||| ||  |||||||  ||||||||||||| || ||  | |||
Sbjct: 27264 gtggagaagacagcggaggtagcaatcgaggtggtcgacacggtggcggaggcgactgag 27323

                                                                         
Query: 399   aaagtcgccggcgaggtggccgaggcgtttcccgaaaatgaagggctcaaggaggcagca 458
             || |||||||||||| ||||||| || |||||||  || |||   ||||||||||  || 
Sbjct: 27324 aaggtcgccggcgagctggccgacgcttttcccggcaacgaaaatctcaaggaggttgcc 27383

                                                                         
Query: 459   tccaggatcaagaccgtcgccgatgcgatcgaggaggacgccgagaaagccgaggcacta 518
             |||| ||| |||||||| ||||||| ||| ||||| || ||||||||||||||||| |||
Sbjct: 27384 tccaagattaagaccgtagccgatgtgatagaggatgatgccgagaaagccgaggcccta 27443

                         
Query: 519   atccataaggtt 530
             ||||| ||||||
Sbjct: 27444 atccagaaggtt 27455



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 292   ttgttgcgatacctatttacagaaagataagagcactggaag 333
             ||||||| ||||| || |||||||||||||||||| ||||||
Sbjct: 27115 ttgttgctatacccatctacagaaagataagagcattggaag 27156



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 232   gaggaaatctccctgtgcccaacatgccttcatgg 266
             ||||||||||||| || |||| |||||||||||||
Sbjct: 26951 gaggaaatctcccagtacccagcatgccttcatgg 26985

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  111 bits (56), Expect = 2e-21
 Identities = 158/192 (82%)
 Strand = Plus / Plus

                                                                            
Query: 339      gtggagaagacggcagaggtggcggtcgaggtaatcgacacggtggccgaagctgccgag 398
                ||||||||||| || ||||| ||  |||||||  ||||||||||||| || ||  | |||
Sbjct: 22423509 gtggagaagacagcggaggtagcaatcgaggtggtcgacacggtggcggaggcgactgag 22423568

                                                                            
Query: 399      aaagtcgccggcgaggtggccgaggcgtttcccgaaaatgaagggctcaaggaggcagca 458
                || |||||||||||| ||||||| || |||||||  || |||   ||||||||||  || 
Sbjct: 22423569 aaggtcgccggcgagctggccgacgcttttcccggcaacgaaaatctcaaggaggttgcc 22423628

                                                                            
Query: 459      tccaggatcaagaccgtcgccgatgcgatcgaggaggacgccgagaaagccgaggcacta 518
                |||| ||| |||||||| ||||||| ||| ||||| || ||||||||||||||||| |||
Sbjct: 22423629 tccaagattaagaccgtagccgatgtgatagaggatgatgccgagaaagccgaggcccta 22423688

                            
Query: 519      atccataaggtt 530
                ||||| ||||||
Sbjct: 22423689 atccagaaggtt 22423700



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 292      ttgttgcgatacctatttacagaaagataagagcactggaag 333
                ||||||| ||||| || |||||||||||||||||| ||||||
Sbjct: 22423360 ttgttgctatacccatctacagaaagataagagcattggaag 22423401



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 232      gaggaaatctccctgtgcccaacatgccttcatgg 266
                ||||||||||||| || |||| |||||||||||||
Sbjct: 22423196 gaggaaatctcccagtacccagcatgccttcatgg 22423230

>gb|AY106821.1| Zea mays PCO092737 mRNA sequence
          Length = 933

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 191/239 (79%)
 Strand = Plus / Plus

                                                                       
Query: 307 tttacagaaagataagagcactggaagataaggtggagaagacggcagaggtggcggtcg 366
           ||||||||| | | |||||| | |||||||| || ||||||||||| |||| |||| |||
Sbjct: 415 tttacagaaggttcagagcattagaagataacgtagagaagacggcggaggcggcgatcg 474

                                                                       
Query: 367 aggtaatcgacacggtggccgaagctgccgagaaagtcgccggcgaggtggccgaggcgt 426
           |||| |||||| ||||||| || ||  ||||||| ||||||| |||||| ||  | ||||
Sbjct: 475 aggtgatcgactcggtggcggaggcgaccgagaaggtcgccgacgaggttgcgcaagcgt 534

                                                                       
Query: 427 ttcccgaaaatgaagggctcaaggaggcagcatccaggatcaagaccgtcgccgatgcga 486
           | ||||  | ||||   |||||| ||||||| |||| ||| |||||  |||| |||| ||
Sbjct: 535 tccccggcagtgaaactctcaagcaggcagcctccaagattaagacgatcgcggatgaga 594

                                                                      
Query: 487 tcgaggaggacgccgagaaagccgaggcactaatccataaggttgatgagataacgaaa 545
           ||||||| || ||||| ||||| ||||| || ||  | |||||||| ||||||| ||||
Sbjct: 595 tcgaggaagatgccgacaaagctgaggccctgattgagaaggttgacgagataaagaaa 653

>ref|XM_418734.1| PREDICTED: Gallus gallus similar to Secernin 1 (LOC420635), mRNA
          Length = 1845

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 35   atatcttccattgcttccaagccttg 60
            ||||||||||||||||| ||||||||
Sbjct: 1757 atatcttccattgcttctaagccttg 1732

>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 472   ccgtcgccgatgcgatcgagga 493
             ||||||||||||||||||||||
Sbjct: 70023 ccgtcgccgatgcgatcgagga 70044

>emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on chromosome 6 Contains two
             CpG islands, complete sequence
          Length = 124506

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 177   atcaggacagcaacacaaatcc 198
             ||||||||||||||||||||||
Sbjct: 85026 atcaggacagcaacacaaatcc 85005

>emb|CR406502.1| Gallus gallus finished cDNA, clone ChEST115n15
          Length = 1731

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 35   atatcttccattgcttccaagccttg 60
            ||||||||||||||||| ||||||||
Sbjct: 1060 atatcttccattgcttctaagccttg 1035

>emb|CR406751.1| Gallus gallus finished cDNA, clone ChEST988a14
          Length = 1429

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 35  atatcttccattgcttccaagccttg 60
           ||||||||||||||||| ||||||||
Sbjct: 744 atatcttccattgcttctaagccttg 719

>gb|AC016942.13| Homo sapiens 3 BAC RP11-536K4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152014

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 293   tgttgcgatacctatttacag 313
             |||||||||||||||||||||
Sbjct: 15977 tgttgcgatacctatttacag 15957

>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 403  tcgccggcgaggtggccgaggcgtt 427
            ||||||| |||||||||||||||||
Sbjct: 2014 tcgccggggaggtggccgaggcgtt 1990

>gb|AC160986.5| Mus musculus BAC clone RP23-258K21 from chromosome 6, complete sequence
          Length = 209886

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    tatcttccattgcttccaag 55
             ||||||||||||||||||||
Sbjct: 63301 tatcttccattgcttccaag 63320

>gb|AC102566.9| Mus musculus chromosome 9, clone RP23-223D10, complete sequence
          Length = 253343

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   ggaagataaggtggagaaga 348
             ||||||||||||||||||||
Sbjct: 83080 ggaagataaggtggagaaga 83061

>emb|CR683700.2|CNS0FQHS Tetraodon nigroviridis full-length cDNA
          Length = 858

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 489 gaggaggacgccgagaaagc 508
           ||||||||||||||||||||
Sbjct: 371 gaggaggacgccgagaaagc 390

>emb|CR662625.2|CNS0FA93 Tetraodon nigroviridis full-length cDNA
          Length = 598

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 489 gaggaggacgccgagaaagc 508
           ||||||||||||||||||||
Sbjct: 111 gaggaggacgccgagaaagc 130

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 386     cgaagctgccgagaaagtcgccggcgag 413
               |||||| |||||||||||||||| ||||
Sbjct: 1717781 cgaagccgccgagaaagtcgccgccgag 1717808

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 402     gtcgccggcgaggtggccgaggcg 425
               |||||||||||| |||||||||||
Sbjct: 4036798 gtcgccggcgagttggccgaggcg 4036821

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 404      cgccggcgaggtggccgagg 423
                ||||||||||||||||||||
Sbjct: 20998552 cgccggcgaggtggccgagg 20998533

>gb|AC126259.4| Mus musculus BAC clone RP23-330F19 from chromosome 6, complete sequence
          Length = 257100

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    tatcttccattgcttccaag 55
             ||||||||||||||||||||
Sbjct: 99756 tatcttccattgcttccaag 99737

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 402     gtcgccggcgaggtggccgaggcg 425
               ||||||||||||||||||| ||||
Sbjct: 1834701 gtcgccggcgaggtggccgtggcg 1834724

>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_A12
          Length = 152269

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   cgccggcgaggtggccgagg 423
             ||||||||||||||||||||
Sbjct: 41851 cgccggcgaggtggccgagg 41832

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    tggtcgttggtgccgtgctt 293
              ||||||||||||||||||||
Sbjct: 274175 tggtcgttggtgccgtgctt 274156

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 406     ccggcgaggtggccgaggcg 425
               ||||||||||||||||||||
Sbjct: 3249138 ccggcgaggtggccgaggcg 3249119

>gb|AC174767.1| Gasterosteus aculeatus chromosome VMRC28-49C03, complete sequence
          Length = 136807

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   gaaatctccctgtgcccaac 254
             ||||||||||||||||||||
Sbjct: 46254 gaaatctccctgtgcccaac 46235


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,457,299
Number of Sequences: 3902068
Number of extensions: 3457299
Number of successful extensions: 63896
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63341
Number of HSP's gapped (non-prelim): 552
length of query: 546
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 523
effective length of database: 17,143,297,704
effective search space: 8965944699192
effective search space used: 8965944699192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)