>YB8B_YEAST (P38355) Protein YBR287W|
          Length = 427

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 27/117 (23%), Positives = 59/117 (50%)
 Frame = +3

Query: 183 FLSLLVVASMPIVQVLLIGVIGAFLASGYSKVFTASARRDMNKVVFTVFTPSLIFANLAK 362
           F  L  +    ++QV++I + G + AS  S +    +++ ++ +   +FTP LIF+ LAK
Sbjct: 7   FAHLAYLVFESVLQVVIIALAGFWSAS--SGLLPKQSQKIISLLNVDLFTPCLIFSKLAK 64

Query: 363 TVTLSDVISWWFMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFCSAGNLGNL 533
           +++++ +     +P+   +T  +    G +  +IL   +     ++A    GN  +L
Sbjct: 65  SLSMAKIFEIAIIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSL 121

>YNJ5_YEAST (P53932) Hypothetical 71.2 kDa protein in RPS7B-YPT53 intergenic|
           region
          Length = 642

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
 Frame = +3

Query: 201 VASMPIVQVLLIGVIGAFLASGYSKVFTASARRDMNKVVFTVFTPSLIFANLAKTVTLSD 380
           V+  PI+++ LI  +G  +A     + T  A R ++ +V TV  PSL F  +   +   D
Sbjct: 12  VSVKPIIKIYLIIGVGFLMAK--MGILTVEATRIISDIVLTVLLPSLSFNKIVANIEDKD 69

Query: 381 VISWWFMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFCSAGNLGNLLLIVVPAV- 557
           + S   + ++  + F  G    ++    L  P+ + G I+A     N+ +L +  + ++ 
Sbjct: 70  IKSVGIICLSALLIFGSGFFFAYVVRLFLPVPKQWYGGILAGGMFPNISDLPIAYLQSMD 129

Query: 558 -----CDEDGN 575
                 +E+GN
Sbjct: 130 QGLVFSEEEGN 140

>SSUC_ECOLI (P75851) Putative aliphatic sulfonates transport permease protein|
           ssuC
          Length = 263

 Score = 37.7 bits (86), Expect = 0.027
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 393 WFMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFCSAGNLGNL 533
           WF+PV I   + + S++GWL+ +IL  P+   G++ AF +    G L
Sbjct: 15  WFLPVGIVAVWQLASSVGWLSTRILPSPE---GVVTAFWTLSASGEL 58

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 290 AGGENLAVTRGEEGSDDADEQDLDDGHGCHH-EQRQEAHLPGPDIGSRLFLRP 135
           A  E  A TR  EGS+DA  +D D G      EQ+ E   PGP+  S    RP
Sbjct: 292 AAAEEAAGTREPEGSEDAAGEDGDQGRPQEETEQQAERQEPGPETQSEEEERP 344

>TAF7_YEAST (Q05021) Transcription initiation factor TFIID subunit 7|
           (TBP-associated factor 7) (TBP-associated factor 67 kDa)
           (TAFII-67)
          Length = 590

 Score = 32.7 bits (73), Expect = 0.86
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = -3

Query: 320 KNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLD---------DGHGCHHEQRQEAHLPG 168
           K   +H  A A G+  A   GEEG ++ +E+DLD         +G G   ++ Q+    G
Sbjct: 343 KKEEIHTIASAVGKQGAEEEGEEGMEEEEEEDLDLGAAFESEEEGSGAEGDKEQQQEEVG 402

Query: 167 PDI 159
            ++
Sbjct: 403 DEV 405

>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug|
           resistance protein homolog) (P-glycoprotein)
          Length = 1336

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +3

Query: 186 LSLLVVASMPIVQVLLIGVIGAFLASGYSK 275
           L+L+V+AS PI+ +L++G I +FL+S Y K
Sbjct: 253 LTLVVLASYPII-ILVVGFINSFLSSAYEK 281

>ESX1L_HUMAN (Q8N693) Extraembryonic, spermatogenesis, homeobox 1-like protein|
          Length = 406

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -3

Query: 338 RWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGHGCHHEQRQE 183
           R GED +N       G   EN     G EGS  +D+QD + G G   EQ+QE
Sbjct: 39  RGGEDEENTRSKPEYGTEAENNV---GTEGSVPSDDQDREGGGGHEPEQQQE 87

>LSPA_STRCO (Q9S2X7) Lipoprotein signal peptidase (EC 3.4.23.36)|
           (Prolipoprotein signal peptidase) (Signal peptidase II)
           (SPase II)
          Length = 204

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
 Frame = +3

Query: 258 ASGYSKVFTASARRDMNKVVFTVFTPSLI--FANLAKTVTLSDVISWWFMPVNIAITFLV 431
           A G+ + FT         ++FTV   ++I   A LA+ +          +P  IA+  L+
Sbjct: 97  AFGFGEAFT---------IIFTVIAAAVIVVIARLARKLHS--------LPWAIALGLLL 139

Query: 432 GSALGWLACKILKPPQHFRGLIMAFCSAGNLGNLLLIVVPAVC 560
           G ALG L  +I + P  F G ++ F +  +     L     VC
Sbjct: 140 GGALGNLTDRIFRAPGVFEGAVVDFIAPKHFAVFNLADSAIVC 182

>YDQ4_SCHPO (O14197) Hypothetical protein C5D6.04 in chromosome I|
          Length = 452

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
 Frame = +3

Query: 177 MGFLSLLVVASM-----PIVQVLLIGVIGAFLASGYSKVFTASARRDMNKVVFTV----F 329
           MGF S L   ++     PI++  L  ++ A    GY         RD  KV+ ++    F
Sbjct: 1   MGFFSSLGQINVWSLLRPIIESDLEVIVIAL--GGYVLAKKGFLPRDAQKVISSLNVYFF 58

Query: 330 TPSLIFANLAKTVTLSDVISWWFMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFC 509
           TP L+F  +   + L  +I    +PV   I       + +L  K+ +     R    A  
Sbjct: 59  TPCLVFEKVGNGLNLKMLIDLSLLPVFYVIISAASILISFLLAKLFRLTPRQRNFATACI 118

Query: 510 SAGNLGNLLLIVVPAV 557
           +  N  +L L +V ++
Sbjct: 119 TFQNSNSLPLALVSSL 134

>HAT2_ARATH (P46601) Homeobox-leucine zipper protein HAT2 (HD-ZIP protein 2)|
          Length = 283

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 16  TPPSSLLLCPAAHSSGDRASEDVCENHH*HHR 111
           TPP++L++CP+    G  +S     NHH +HR
Sbjct: 229 TPPTTLIMCPSCERVGGPSS----SNHHHNHR 256

>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor|
          Length = 1685

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -3

Query: 395 PPGDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDD 216
           PPG + G++   GE G+  + G+D +N    +P   G        GE G D    Q  D 
Sbjct: 280 PPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYP---GEPGRDGEKGQKGDT 336

Query: 215 G 213
           G
Sbjct: 337 G 337

>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -3

Query: 398 EPPGDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLD 219
           E  G+D G     G+ GEDE   ED + +         GE+     G+EG D+ DE D  
Sbjct: 446 EDEGEDEGDEGDEGDEGEDEGEDEDDEED--------EGEDEG-DEGDEGEDEGDEGDEG 496

Query: 218 DGHG 207
           +  G
Sbjct: 497 EDEG 500



 Score = 29.6 bits (65), Expect = 7.2
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 389 GDDVGQR-DRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDG 213
           G+D G   +  G+ GEDE  GED          G  GE+     G+EG D+ +++  D+G
Sbjct: 543 GEDEGDEGEDEGDEGEDE--GED---------EGDEGEDEGEDEGDEGEDEGEDEG-DEG 590

Query: 212 HGCHHEQRQEAHLPGPDIG 156
                ++  E    G D G
Sbjct: 591 EDEGEDEGDEGEDEGEDEG 609



 Score = 29.3 bits (64), Expect = 9.5
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 389 GDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGH 210
           G+D G+ +  G+ GEDE   E  +        G  GE+     G+EG +  DE D  +  
Sbjct: 568 GEDEGEDE--GDEGEDEGEDEGDEGEDEGEDEGDEGEDEGEDEGDEGDEGEDEGDEGEDE 625

Query: 209 G 207
           G
Sbjct: 626 G 626

>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 383 DVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEG 249
           D+G R + GE G+D   GE  +N L       G   LA ++GE G
Sbjct: 578 DIGPRGKAGERGKDGERGERGENGL------PGPSGLAASKGERG 616

>TRMU_LISIN (Q92BK1) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 380 VGQRDRLGEVGEDERW---GEDCKNNLVHVPAGAGGENL 273
           +GQR  LG  G+ E W   G+D KNN++ V  G   ++L
Sbjct: 241 IGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSL 279

>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 356 EVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGHGCHH 198
           EV  D+ W E+             GE+L+ + G+E  D  +++D DDG    H
Sbjct: 576 EVDSDDEWEEE-----------EPGESLSHSEGDEDDDVGEDEDEDDGFFVPH 617

>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 1)
          Length = 3684

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
 Frame = -3

Query: 407  HRHEPPGDDVGQRDRLGEVGEDERWGEDCKNNLVHVPAGAGGENLAVTR---------GE 255
            H      DDV   D +G+ GED+  G+D   +LV    GAG  +LA T          G+
Sbjct: 2123 HVENRADDDVD--DDMGDEGEDDE-GDDEDADLVE--DGAGVMSLAGTDVEDPEDTGLGD 2177

Query: 254  EGSDDADEQDLDDGH 210
            E +DD  ++D DD H
Sbjct: 2178 EYNDDMVDEDDDDFH 2192

>CAF1A_HUMAN (Q13111) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 938

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 356 EVGEDERWGEDCKNNLVHVPAGAGGENLAVTRGEEGSDDADEQDLDDGHGCHH 198
           EV  DE W E+             GE+L+ + G++  D  +++D DDG    H
Sbjct: 579 EVDSDEEWEEE-----------EPGESLSHSEGDDDDDMGEDEDEDDGFFVPH 620

>MTX2_XANOR (P52311) Modification methylase XorII (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase XorII) (M.XorII)
          Length = 424

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 80  TCVKTIIDIIGQKLRRSAGV*GRDVILYQG 169
           T  K+++D+ G +LRR AG+  RD+ +  G
Sbjct: 50  TVCKSVVDVTGDELRRIAGIGKRDIDIVIG 79

>Y1382_METTH (O27435) Hypothetical protein MTH1382|
          Length = 302

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +3

Query: 216 IVQVLLIGVIGAFLASGYSKVFTASARRD---MNKVVFTVFTPSLIFANLAKTVTLSDVI 386
           ++ VL++ ++G  L     KV       D   +N+VV  V  PSLIF +L +   LS + 
Sbjct: 10  VLSVLVLVLLGYIL-----KVLGVLGEEDASTLNRVVINVAIPSLIFTSLYR-ADLSGIS 63

Query: 387 SWWFMPVNIAITFLVGSALGWL 452
               +PV   IT  +   + +L
Sbjct: 64  DLVLIPVICMITGTLSGTIAYL 85

>MENA_HAEIN (P44739) 1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC|
           2.5.1.-) (DHNA-octaprenyltransferase)
          Length = 308

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +3

Query: 390 WW------FMPVNIAITFLVGSALGWLACKILKPPQHFRGLIMAFCSAGNLGNLLLIVVP 551
           WW       +P+ +A  F  GSALG+ A      PQ F GL+M  C       LL  ++ 
Sbjct: 14  WWETARPKTLPLALASIF-TGSALGYWA-----NPQGFNGLVMVLC-------LLTTILL 60

Query: 552 AVCDEDGNPFGN 587
            V     N +G+
Sbjct: 61  QVLSNFANDYGD 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,764,823
Number of Sequences: 219361
Number of extensions: 1998564
Number of successful extensions: 6861
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6837
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)