ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal1l14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067799.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 4e-63
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
3dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
4ref|NM_102653.2| Arabidopsis thaliana catalytic AT1G29120 transc... 64 5e-07
5ref|NM_202206.1| Arabidopsis thaliana catalytic AT1G29120 transc... 64 5e-07
6gb|BT015769.1| Arabidopsis thaliana At1g29120 mRNA, complete cds 64 5e-07
7gb|AY093168.1| Arabidopsis thaliana unknown protein (At1g29120:A... 64 5e-07
8emb|BX842513.1|CNS0ACDH Arabidopsis thaliana Full-length cDNA Co... 64 5e-07
9emb|BX842509.1|CNS0AC4Y Arabidopsis thaliana Full-length cDNA Co... 64 5e-07
10emb|BX842501.1|CNS0ABMD Arabidopsis thaliana Full-length cDNA Co... 64 5e-07
11dbj|AK176749.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 64 5e-07
12ref|NM_001036029.1| Arabidopsis thaliana catalytic AT1G29120 tra... 56 1e-04
13gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28... 56 1e-04
14dbj|AK175462.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 56 1e-04
15dbj|AK175257.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 56 1e-04
16dbj|AK175157.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 56 1e-04
17ref|NM_001036030.1| Arabidopsis thaliana catalytic AT1G29120 tra... 52 0.002
18dbj|AB027535.1| Ipomoea nil CHS-E gene for chalcone synthase, co... 46 0.12
19emb|AL355863.18| Human DNA sequence from clone RP11-479A21 on ch... 44 0.47
20emb|AL355672.12| Human DNA sequence from clone RP11-165C19 on ch... 42 1.9
21gb|AC157792.4| Mus musculus chromosome 7, clone RP24-192N20, com... 42 1.9
22gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, comp... 42 1.9
23gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 7.3
24gb|AC133167.3| Mus musculus BAC clone RP24-211H4 from chromosome... 40 7.3
25emb|AL161892.9| Human DNA sequence from clone RP11-173N7 on chro... 40 7.3
26emb|CR392356.5| Mouse DNA sequence from clone RP23-329D21 on chr... 40 7.3
27gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold 40 7.3
28emb|AL844152.9| Zebrafish DNA sequence from clone DKEY-37L7, com... 40 7.3
29gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 40 7.3
30gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, comple... 40 7.3 
>dbj|AK067799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114C10, full
            insert sequence
          Length = 2539

 Score =  250 bits (126), Expect = 4e-63
 Identities = 279/329 (84%), Gaps = 1/329 (0%)
 Strand = Plus / Plus

                                                                        
Query: 9    tcgttcacttgatggctacaagtacattgtgaatgtggaatactgttcgcctgtgtcgtc 68
            ||||||||| |||||||||||| ||||||||||| ||||||| ||||||||| | || ||
Sbjct: 1828 tcgttcactggatggctacaagcacattgtgaatatggaatattgttcgcctatatcatc 1887

                                                                        
Query: 69   cgacgggccccattttccttcgcgggctgcccgagctaaagaagctgcacaaagtacacc 128
             || || || ||||| |||  ||  |||||| |||| |||||||||||||| |||| |||
Sbjct: 1888 tgatggccctcatttccctctgcaagctgccagagccaaagaagctgcacagagtagacc 1947

                                                                        
Query: 129  gaacatggaaaataccaatgaatatcaccagnatgatggaagaggagatgattcgtggtc 188
             ||||  ||||| ||  | ||||||||| |  |||||||||||||||||||| | |||  
Sbjct: 1948 aaacaaagaaaacactgaagaatatcacga-aatgatggaagaggagatgatccatggct 2006

                                                                        
Query: 189  tgcagagagtgggttggaagaaagtagatgtcaacttccatgcatcactgtggccttact 248
            ||||||| || |||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 2007 tgcagagggtcggttggaagaaagtagatgtcaacttccatacagcactatggccttact 2066

                                                                        
Query: 249  ctgctcacaacaacatgcatgttaagaatgagtggcttcacaacgctggcgccggtgtta 308
             |||||| |||||||| |||||||||||||||||||||||||| || || ||||| || |
Sbjct: 2067 ttgctcataacaacatacatgttaagaatgagtggcttcacaatgccggtgccggcgtca 2126

                                         
Query: 309  tcgcccacgtcgcggacagcatgaaacag 337
            ||||||| || ||||||||||| ||||||
Sbjct: 2127 tcgcccatgtggcggacagcataaaacag 2155
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  107 bits (54), Expect = 4e-20
 Identities = 90/102 (88%)
 Strand = Plus / Plus

                                                                           
Query: 169     agaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaacttcca 228
               |||||||||||| | |||  ||||||| || |||||||||||||||||||||||||||||
Sbjct: 2804595 agaggagatgatccatggcttgcagagggtcggttggaagaaagtagatgtcaacttcca 2804654

                                                         
Query: 229     tgcatcactgtggccttactctgctcacaacaacatgcatgt 270
               | || |||| |||||||||| |||||| |||||||| |||||
Sbjct: 2804655 tacagcactatggccttactttgctcataacaacatacatgt 2804696



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                           
Query: 9       tcgttcacttgatggctacaagtacattgtgaatgtggaatactgttcgcctgtgtcgtc 68
               ||||||||| |||||||||||| ||||||||||| ||||||| ||||||||| | || ||
Sbjct: 2804336 tcgttcactggatggctacaagcacattgtgaatatggaatattgttcgcctatatcatc 2804395

                                                                           
Query: 69      cgacgggccccattttccttcgcgggctgcccgagctaaagaagctgcacaaagtacacc 128
                || || || ||||| |||  ||  |||||| |||| |||||||||||||| |||| |||
Sbjct: 2804396 tgatggccctcatttccctctgcaagctgccagagccaaagaagctgcacagagtagacc 2804455

                    
Query: 129     gaaca 133
                ||||
Sbjct: 2804456 aaaca 2804460



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                           
Query: 263     atgcatgttaagaatgagtggcttcacaacgctggcgccggtgttatcgcccacgtcgcg 322
               ||||| ||||||||||||||||||||||| || || ||||| || |||||||| || |||
Sbjct: 2804781 atgcaggttaagaatgagtggcttcacaatgccggtgccggcgtcatcgcccatgtggcg 2804840

                              
Query: 323     gacagcatgaaacag 337
               |||||||| ||||||
Sbjct: 2804841 gacagcataaaacag 2804855
to top
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085L11
          Length = 148142

 Score =  107 bits (54), Expect = 4e-20
 Identities = 90/102 (88%)
 Strand = Plus / Plus

                                                                         
Query: 169   agaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaacttcca 228
             |||||||||||| | |||  ||||||| || |||||||||||||||||||||||||||||
Sbjct: 48076 agaggagatgatccatggcttgcagagggtcggttggaagaaagtagatgtcaacttcca 48135

                                                       
Query: 229   tgcatcactgtggccttactctgctcacaacaacatgcatgt 270
             | || |||| |||||||||| |||||| |||||||| |||||
Sbjct: 48136 tacagcactatggccttactttgctcataacaacatacatgt 48177



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                         
Query: 9     tcgttcacttgatggctacaagtacattgtgaatgtggaatactgttcgcctgtgtcgtc 68
             ||||||||| |||||||||||| ||||||||||| ||||||| ||||||||| | || ||
Sbjct: 47817 tcgttcactggatggctacaagcacattgtgaatatggaatattgttcgcctatatcatc 47876

                                                                         
Query: 69    cgacgggccccattttccttcgcgggctgcccgagctaaagaagctgcacaaagtacacc 128
              || || || ||||| |||  ||  |||||| |||| |||||||||||||| |||| |||
Sbjct: 47877 tgatggccctcatttccctctgcaagctgccagagccaaagaagctgcacagagtagacc 47936

                  
Query: 129   gaaca 133
              ||||
Sbjct: 47937 aaaca 47941



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 263   atgcatgttaagaatgagtggcttcacaacgctggcgccggtgttatcgcccacgtcgcg 322
             ||||| ||||||||||||||||||||||| || || ||||| || |||||||| || |||
Sbjct: 48262 atgcaggttaagaatgagtggcttcacaatgccggtgccggcgtcatcgcccatgtggcg 48321

                            
Query: 323   gacagcatgaaacag 337
             |||||||| ||||||
Sbjct: 48322 gacagcataaaacag 48336
to top
>ref|NM_102653.2| Arabidopsis thaliana catalytic AT1G29120 transcript variant
            AT1G29120.1 mRNA, complete cds
          Length = 1846

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 165  tggaagaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaact 224
            |||||||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||
Sbjct: 1359 tggaagaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagct 1418

                
Query: 225  tcca 228
            ||||
Sbjct: 1419 tcca 1422
to top
>ref|NM_202206.1| Arabidopsis thaliana catalytic AT1G29120 transcript variant
            AT1G29120.2 mRNA, complete cds
          Length = 1808

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 165  tggaagaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaact 224
            |||||||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||
Sbjct: 1399 tggaagaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagct 1458

                
Query: 225  tcca 228
            ||||
Sbjct: 1459 tcca 1462
to top
>gb|BT015769.1| Arabidopsis thaliana At1g29120 mRNA, complete cds
          Length = 1368

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 165  tggaagaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaact 224
            |||||||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||
Sbjct: 1160 tggaagaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagct 1219

                
Query: 225  tcca 228
            ||||
Sbjct: 1220 tcca 1223
to top
>gb|AY093168.1| Arabidopsis thaliana unknown protein (At1g29120:At1g29130) mRNA,
            complete cds
          Length = 1838

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 165  tggaagaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaact 224
            |||||||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||
Sbjct: 1359 tggaagaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagct 1418

                
Query: 225  tcca 228
            ||||
Sbjct: 1419 tcca 1422
to top
>emb|BX842513.1|CNS0ACDH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS19ZA07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1809

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 165  tggaagaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaact 224
            |||||||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||
Sbjct: 1400 tggaagaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagct 1459

                
Query: 225  tcca 228
            ||||
Sbjct: 1460 tcca 1463
to top
>emb|BX842509.1|CNS0AC4Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB82ZA11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1747

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 165  tggaagaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaact 224
            |||||||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||
Sbjct: 1340 tggaagaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagct 1399

                
Query: 225  tcca 228
            ||||
Sbjct: 1400 tcca 1403
to top
>emb|BX842501.1|CNS0ABMD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH25ZF04 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1776

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 165  tggaagaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaact 224
            |||||||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||
Sbjct: 1335 tggaagaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagct 1394

                
Query: 225  tcca 228
            ||||
Sbjct: 1395 tcca 1398
to top
>dbj|AK176749.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-28-O12
          Length = 1852

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                        
Query: 165  tggaagaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaact 224
            |||||||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||
Sbjct: 1356 tggaagaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagct 1415

                
Query: 225  tcca 228
            ||||
Sbjct: 1416 tcca 1419
to top
>ref|NM_001036029.1| Arabidopsis thaliana catalytic AT1G29120 transcript variant
            AT1G29120.3 mRNA, complete cds
          Length = 1964

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                        
Query: 169  agaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaacttcca 228
            |||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||||||
Sbjct: 1445 agaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagcttcca 1504
to top
>gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete
             sequence
          Length = 154716

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 169   agaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaacttcca 228
             |||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||||||
Sbjct: 85531 agaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagcttcca 85472
to top
>dbj|AK175462.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-89-D11
          Length = 1936

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                        
Query: 169  agaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaacttcca 228
            |||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||||||
Sbjct: 1445 agaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagcttcca 1504
to top
>dbj|AK175257.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-69-E05
          Length = 1935

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                        
Query: 169  agaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaacttcca 228
            |||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||||||
Sbjct: 1444 agaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagcttcca 1503
to top
>dbj|AK175157.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-57-I05
          Length = 1936

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                        
Query: 169  agaggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaacttcca 228
            |||||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||||||
Sbjct: 1445 agaggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagcttcca 1504
to top
>ref|NM_001036030.1| Arabidopsis thaliana catalytic AT1G29120 transcript variant
            AT1G29120.4 mRNA, complete cds
          Length = 1831

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                      
Query: 171  aggagatgattcgtggtctgcagagagtgggttggaagaaagtagatgtcaacttcca 228
            |||| ||||| || |||||||||||  |||| ||||||||||| ||||||| ||||||
Sbjct: 1367 aggaaatgatccgcggtctgcagaggttggggtggaagaaagttgatgtcagcttcca 1424
to top
>dbj|AB027535.1| Ipomoea nil CHS-E gene for chalcone synthase, complete cds
          Length = 9312

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 207  agaaagtagatgtcaacttccat 229
            |||||||||||||||||||||||
Sbjct: 6453 agaaagtagatgtcaacttccat 6475
to top
>emb|AL355863.18| Human DNA sequence from clone RP11-479A21 on chromosome 10 Contains an
             HSPC023 protein (HSPC023) pseudogene, complete sequence
          Length = 151552

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 330   tgaaacagacatgcctgccttccaac 355
             |||||| |||||||||||||||||||
Sbjct: 65173 tgaaactgacatgcctgccttccaac 65198
to top
>emb|AL355672.12| Human DNA sequence from clone RP11-165C19 on chromosome 9, complete
            sequence
          Length = 86371

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 328  catgaaacagacatgcctgcc 348
            |||||||||||||||||||||
Sbjct: 9848 catgaaacagacatgcctgcc 9868
to top
>gb|AC157792.4| Mus musculus chromosome 7, clone RP24-192N20, complete sequence
          Length = 164990

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 370  cctggtgtgctggcatatgcc 390
            |||||||||||||||||||||
Sbjct: 3989 cctggtgtgctggcatatgcc 4009
to top
>gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, complete sequence
          Length = 169442

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    cctggtgtgctggcatatgcc 390
              |||||||||||||||||||||
Sbjct: 105405 cctggtgtgctggcatatgcc 105425
to top
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    catgaaacagacatgcctgc 347
              ||||||||||||||||||||
Sbjct: 870291 catgaaacagacatgcctgc 870272
to top
>gb|AC133167.3| Mus musculus BAC clone RP24-211H4 from chromosome 18, complete
          sequence
          Length = 159356

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 25 tacaagtacattgtgaatgt 44
          ||||||||||||||||||||
Sbjct: 73 tacaagtacattgtgaatgt 54
to top
>emb|AL161892.9| Human DNA sequence from clone RP11-173N7 on chromosome 13 Contains a
              pseudogene similar to part of a novel gene (MGC5466), a
              breast carcinoma amplified sequence 2 (DAM1, BCAS2)
              pseudogene and a CpG island, complete sequence
          Length = 146216

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    tgtgctggcatatgccacgg 394
              ||||||||||||||||||||
Sbjct: 139830 tgtgctggcatatgccacgg 139811
to top
>emb|CR392356.5| Mouse DNA sequence from clone RP23-329D21 on chromosome 11 Contains a
             novel gene, the 5' end of the Dock2 gene for dedicator of
             cyto-kinesis 2 and a CpG island, complete sequence
          Length = 90351

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   atgcatcactgtggccttac 247
             ||||||||||||||||||||
Sbjct: 87820 atgcatcactgtggccttac 87839
to top
>gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold
          Length = 277620

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 347    ccttccaacctgtaagatctggac 370
              ||||||||| ||||||||||||||
Sbjct: 107363 ccttccaacttgtaagatctggac 107386
to top
>emb|AL844152.9| Zebrafish DNA sequence from clone DKEY-37L7, complete sequence
          Length = 180395

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    catgcatgttaagaatgagt 281
              ||||||||||||||||||||
Sbjct: 130458 catgcatgttaagaatgagt 130439
to top
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    atgatggaagaggagatgat 180
              ||||||||||||||||||||
Sbjct: 396737 atgatggaagaggagatgat 396718
to top
>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence
          Length = 227785

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tacaagtacattgtgaatgt 44
             ||||||||||||||||||||
Sbjct: 97874 tacaagtacattgtgaatgt 97855


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,257,109
Number of Sequences: 3902068
Number of extensions: 4257109
Number of successful extensions: 82143
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82058
Number of HSP's gapped (non-prelim): 81
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top