| Clone Name | baal1l09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for putative nicotianamine synthase (nas gene), 3'UTR Length = 206 Score = 365 bits (184), Expect = 7e-98 Identities = 201/204 (98%), Gaps = 2/204 (0%) Strand = Plus / Plus Query: 71 atgcatggtaataatccgtttgtcctcatgcatggnatggatgtggctacttaattattt 130 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 4 atgcatggtaataatccgtttgtcctcatgcatgg-atggatgtggctacttaattattt 62 Query: 131 accataattattaatccttgtctgcatatggctggattattttctaccgtaattgtgctg 190 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 accataattattattccttgtctgcatatggctggattattttctaccgtaattgtgctg 122 Query: 191 ctatg-ttttagtggtcgtctgacagctgctgcctccgggtttaacgtagaggaggagga 249 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 ctatgtttttagtggtcgtctgacagctgctgcctccgggtttaacgtagaggaggagga 182 Query: 250 tgatatgtgttgtgctgagaacga 273 |||||||||||||||||||||||| Sbjct: 183 tgatatgtgttgtgctgagaacga 206
>gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 (nashor2) mRNA, complete cds Length = 1346 Score = 311 bits (157), Expect = 9e-82 Identities = 166/168 (98%), Gaps = 1/168 (0%) Strand = Plus / Plus Query: 7 acccatggcacggtgatgaattcacccaccgnttaatattgcccgattaatctgcgatcg 66 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1164 acccatggcacggtgatgaattcacccaccgattaatattgcccgattaatctgcgatcg 1223 Query: 67 atacatgcatggtaataatccgtttgtcctcatgcatggnatggatgtggctacttaatt 126 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1224 atacatgcatggtaataatccgtttgtcctcatgcatgg-atggatgtggctacttaatt 1282 Query: 127 atttaccataattattaatccttgtctgcatatggctggattattttc 174 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1283 atttaccataattattaatccttgtctgcatatggctggattattttc 1330
>gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA, partial cds Length = 814 Score = 149 bits (75), Expect = 8e-33 Identities = 215/259 (83%), Gaps = 25/259 (9%) Strand = Plus / Plus Query: 22 atgaattcacccaccgnttaatatt-gcccgattaatctgcgatcgataca----tgcat 76 ||||| |||||||||| |||||||| |||||||||||| ||| ||||||| ||||| Sbjct: 434 atgaactcacccaccgattaatatttgcccgattaatcaccgaccgatacaaacatgcat 493 Query: 77 ggtaataatccgtttgtcctcatgcatggn---atggatgtggctacttaattatttacc 133 ||||||||| |||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 494 ggtaataattggtttgtcctcatgcatggatggatggatgtggctactta----tttacc 549 Query: 134 ataattattaatccttgtctgcatatggctgg--------attattttctaccgtaattg 185 ||||||||||||||||| |||| ||||||||| ||||||||||||||||| | Sbjct: 550 ataattattaatccttgcctgcgtatggctggctggattatttattttctaccgtaatcg 609 Query: 186 tgctg-ctatgttttagtggtcgtctgacagctgc----tgcctccgggtttaacgtaga 240 ||| | | |||||||| ||||||||||||||| |||||||||||||||| |||| Sbjct: 610 tgccgtgtttgttttagcaatcgtctgacagctgctgcatgcctccgggtttaacataga 669 Query: 241 ggaggaggatgatatgtgt 259 ||||||||||||||||||| Sbjct: 670 ggaggaggatgatatgtgt 688 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 271 cgagtcgagttgcgtactgctgtaataagtgattttgacactctatatgactgaagtg 328 ||||||||||| | | ||| ||||||||||| |||||||||||||||||||| ||||| Sbjct: 715 cgagtcgagttacctgctgttgtaataagtgtttttgacactctatatgactcaagtg 772
>emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in linkage group 17, complete sequence Length = 155030 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 aattatttaccataattatta 143 ||||||||||||||||||||| Sbjct: 46263 aattatttaccataattatta 46243
>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence Length = 192819 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 ttaattatttaccataattattaa 144 |||||||||||| ||||||||||| Sbjct: 111192 ttaattatttactataattattaa 111169
>gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, complete sequence Length = 218490 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ctggattattttctaccgta 181 |||||||||||||||||||| Sbjct: 151601 ctggattattttctaccgta 151620
>gb|AC123565.6| Homo sapiens 3 BAC RP11-539J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156163 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 agtggcaatcactaaaaagt 344 |||||||||||||||||||| Sbjct: 134030 agtggcaatcactaaaaagt 134011
>emb|AL355799.12| Human DNA sequence from clone RP11-432D3 on chromosome 13 Contains a novel gene, complete sequence Length = 184561 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 agtggcaatcactaaaaagt 344 |||||||||||||||||||| Sbjct: 55331 agtggcaatcactaaaaagt 55350
>gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, complete sequence Length = 199486 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ctggattattttctaccgta 181 |||||||||||||||||||| Sbjct: 159283 ctggattattttctaccgta 159264
>gb|AC147539.1| Pan troglodytes clone rp43-131i22, complete sequence Length = 175485 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 taattatttaccataattat 141 |||||||||||||||||||| Sbjct: 59173 taattatttaccataattat 59192
>gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complete sequence Length = 212207 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 agtggcaatcactaaaaagt 344 |||||||||||||||||||| Sbjct: 90175 agtggcaatcactaaaaagt 90194
>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence Length = 184330 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 tgtggctacttaattattta 131 |||||||||||||||||||| Sbjct: 56822 tgtggctacttaattattta 56803
>gb|DQ343564.1| Populus trichocarpa glucose-6-phosphate dehydrogenase (G6PDH2) mRNA, complete cds Length = 1877 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gctgtaataagtgattttga 308 |||||||||||||||||||| Sbjct: 1013 gctgtaataagtgattttga 994
>emb|AJ606474.1| Fagus sylvatica mRNA for dehydrin/response ABA (rab1 gene) Length = 952 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gggtttaacgtagaggagga 246 |||||||||||||||||||| Sbjct: 54 gggtttaacgtagaggagga 73
>gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, complete sequence Length = 182452 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 taattatttaccataattat 141 |||||||||||||||||||| Sbjct: 77545 taattatttaccataattat 77526
>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete sequence Length = 491220 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 ttaattatttaccataattattaa 144 |||||||||||| ||||||||||| Sbjct: 309897 ttaattatttactataattattaa 309920
>emb|AL844208.5| Mouse DNA sequence from clone RP23-354D14 on chromosome 4, complete sequence Length = 206842 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 126 tatttaccataattattaatccttgtct 153 |||||||| |||||| |||||||||||| Sbjct: 164358 tatttaccttaattaataatccttgtct 164385 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,895,592 Number of Sequences: 3902068 Number of extensions: 3895592 Number of successful extensions: 69307 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69271 Number of HSP's gapped (non-prelim): 28 length of query: 394 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 372 effective length of database: 17,147,199,772 effective search space: 6378758315184 effective search space used: 6378758315184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)