ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal1l09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 365 7e-98
2gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 ... 311 9e-82
3gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA,... 149 8e-33
4emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in ... 42 1.3
5gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete... 40 5.3
6gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, co... 40 5.3
7gb|AC123565.6| Homo sapiens 3 BAC RP11-539J20 (Roswell Park Canc... 40 5.3
8emb|AL355799.12| Human DNA sequence from clone RP11-432D3 on chr... 40 5.3
9gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, com... 40 5.3
10gb|AC147539.1| Pan troglodytes clone rp43-131i22, complete sequence 40 5.3
11gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complet... 40 5.3
12gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, comp... 40 5.3
13gb|DQ343564.1| Populus trichocarpa glucose-6-phosphate dehydroge... 40 5.3
14emb|AJ606474.1| Fagus sylvatica mRNA for dehydrin/response ABA (... 40 5.3
15gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, comple... 40 5.3
16gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83... 40 5.3
17emb|AL844208.5| Mouse DNA sequence from clone RP23-354D14 on chr... 40 5.3

>emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for putative
           nicotianamine synthase (nas gene), 3'UTR
          Length = 206

 Score =  365 bits (184), Expect = 7e-98
 Identities = 201/204 (98%), Gaps = 2/204 (0%)
 Strand = Plus / Plus

                                                                       
Query: 71  atgcatggtaataatccgtttgtcctcatgcatggnatggatgtggctacttaattattt 130
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4   atgcatggtaataatccgtttgtcctcatgcatgg-atggatgtggctacttaattattt 62

                                                                       
Query: 131 accataattattaatccttgtctgcatatggctggattattttctaccgtaattgtgctg 190
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  accataattattattccttgtctgcatatggctggattattttctaccgtaattgtgctg 122

                                                                       
Query: 191 ctatg-ttttagtggtcgtctgacagctgctgcctccgggtttaacgtagaggaggagga 249
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctatgtttttagtggtcgtctgacagctgctgcctccgggtttaacgtagaggaggagga 182

                                   
Query: 250 tgatatgtgttgtgctgagaacga 273
           ||||||||||||||||||||||||
Sbjct: 183 tgatatgtgttgtgctgagaacga 206



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>gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 (nashor2) mRNA, complete cds
          Length = 1346

 Score =  311 bits (157), Expect = 9e-82
 Identities = 166/168 (98%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                        
Query: 7    acccatggcacggtgatgaattcacccaccgnttaatattgcccgattaatctgcgatcg 66
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1164 acccatggcacggtgatgaattcacccaccgattaatattgcccgattaatctgcgatcg 1223

                                                                        
Query: 67   atacatgcatggtaataatccgtttgtcctcatgcatggnatggatgtggctacttaatt 126
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1224 atacatgcatggtaataatccgtttgtcctcatgcatgg-atggatgtggctacttaatt 1282

                                                            
Query: 127  atttaccataattattaatccttgtctgcatatggctggattattttc 174
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1283 atttaccataattattaatccttgtctgcatatggctggattattttc 1330



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>gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA, partial cds
          Length = 814

 Score =  149 bits (75), Expect = 8e-33
 Identities = 215/259 (83%), Gaps = 25/259 (9%)
 Strand = Plus / Plus

                                                                       
Query: 22  atgaattcacccaccgnttaatatt-gcccgattaatctgcgatcgataca----tgcat 76
           ||||| |||||||||| |||||||| ||||||||||||  ||| |||||||    |||||
Sbjct: 434 atgaactcacccaccgattaatatttgcccgattaatcaccgaccgatacaaacatgcat 493

                                                                       
Query: 77  ggtaataatccgtttgtcctcatgcatggn---atggatgtggctacttaattatttacc 133
           |||||||||  ||||||||||||||||||    |||||||||||||||||    ||||||
Sbjct: 494 ggtaataattggtttgtcctcatgcatggatggatggatgtggctactta----tttacc 549

                                                                       
Query: 134 ataattattaatccttgtctgcatatggctgg--------attattttctaccgtaattg 185
           ||||||||||||||||| |||| |||||||||         ||||||||||||||||| |
Sbjct: 550 ataattattaatccttgcctgcgtatggctggctggattatttattttctaccgtaatcg 609

                                                                       
Query: 186 tgctg-ctatgttttagtggtcgtctgacagctgc----tgcctccgggtttaacgtaga 240
           ||| |  | ||||||||   |||||||||||||||    |||||||||||||||| ||||
Sbjct: 610 tgccgtgtttgttttagcaatcgtctgacagctgctgcatgcctccgggtttaacataga 669

                              
Query: 241 ggaggaggatgatatgtgt 259
           |||||||||||||||||||
Sbjct: 670 ggaggaggatgatatgtgt 688



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 271 cgagtcgagttgcgtactgctgtaataagtgattttgacactctatatgactgaagtg 328
           ||||||||||| | | ||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 715 cgagtcgagttacctgctgttgtaataagtgtttttgacactctatatgactcaagtg 772



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>emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in linkage group 17,
             complete sequence
          Length = 155030

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   aattatttaccataattatta 143
             |||||||||||||||||||||
Sbjct: 46263 aattatttaccataattatta 46243



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>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence
          Length = 192819

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 121    ttaattatttaccataattattaa 144
              |||||||||||| |||||||||||
Sbjct: 111192 ttaattatttactataattattaa 111169



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>gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, complete sequence
          Length = 218490

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ctggattattttctaccgta 181
              ||||||||||||||||||||
Sbjct: 151601 ctggattattttctaccgta 151620



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>gb|AC123565.6| Homo sapiens 3 BAC RP11-539J20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 156163

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    agtggcaatcactaaaaagt 344
              ||||||||||||||||||||
Sbjct: 134030 agtggcaatcactaaaaagt 134011



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>emb|AL355799.12| Human DNA sequence from clone RP11-432D3 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 184561

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   agtggcaatcactaaaaagt 344
             ||||||||||||||||||||
Sbjct: 55331 agtggcaatcactaaaaagt 55350



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>gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, complete sequence
          Length = 199486

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ctggattattttctaccgta 181
              ||||||||||||||||||||
Sbjct: 159283 ctggattattttctaccgta 159264



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>gb|AC147539.1| Pan troglodytes clone rp43-131i22, complete sequence
          Length = 175485

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   taattatttaccataattat 141
             ||||||||||||||||||||
Sbjct: 59173 taattatttaccataattat 59192



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>gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complete sequence
          Length = 212207

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   agtggcaatcactaaaaagt 344
             ||||||||||||||||||||
Sbjct: 90175 agtggcaatcactaaaaagt 90194



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>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence
          Length = 184330

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tgtggctacttaattattta 131
             ||||||||||||||||||||
Sbjct: 56822 tgtggctacttaattattta 56803



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>gb|DQ343564.1| Populus trichocarpa glucose-6-phosphate dehydrogenase (G6PDH2) mRNA,
            complete cds
          Length = 1877

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  gctgtaataagtgattttga 308
            ||||||||||||||||||||
Sbjct: 1013 gctgtaataagtgattttga 994



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>emb|AJ606474.1| Fagus sylvatica mRNA for dehydrin/response ABA (rab1 gene)
          Length = 952

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 227 gggtttaacgtagaggagga 246
           ||||||||||||||||||||
Sbjct: 54  gggtttaacgtagaggagga 73



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>gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, complete sequence
          Length = 182452

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   taattatttaccataattat 141
             ||||||||||||||||||||
Sbjct: 77545 taattatttaccataattat 77526



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>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete
              sequence
          Length = 491220

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 121    ttaattatttaccataattattaa 144
              |||||||||||| |||||||||||
Sbjct: 309897 ttaattatttactataattattaa 309920



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>emb|AL844208.5| Mouse DNA sequence from clone RP23-354D14 on chromosome 4, complete
              sequence
          Length = 206842

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 126    tatttaccataattattaatccttgtct 153
              |||||||| |||||| ||||||||||||
Sbjct: 164358 tatttaccttaattaataatccttgtct 164385


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,895,592
Number of Sequences: 3902068
Number of extensions: 3895592
Number of successful extensions: 69307
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69271
Number of HSP's gapped (non-prelim): 28
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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