>VE1_HPV09 (Q05111) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 605

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
 Frame = +1

Query: 1   GNSKHIFVTLLLLEARPSIVLPEAEKLATMGRSAGAPQVLSA-----HQEDEDLFETSSS 165
           GNS+ +F      E+     L + + ++       +PQ+ S      H+    LFE  S 
Sbjct: 58  GNSRELFCQQESEESEQQTQLLKRKYISPQAVLQLSPQLESISLSPQHKPKRRLFEQDSG 117

Query: 166 FSCDSDDEAQFSDGEDQFVPASPPARRLNSDG---VYDL---SSIKAELSVK 303
             C  ++    S+ + + VPA+PP     + G   V DL   S++KA L  K
Sbjct: 118 LECSVNEAEDLSETQVEEVPANPPTTAQGTKGLGIVKDLLKHSNVKAVLMAK 169

>AMX1_CAEEL (Q21988) Amine oxidase family member 1|
          Length = 783

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 414 LDNPPFLQREKISTVRKNFHFATLLIHEEGRCFL--RNLLDGELGLDGRQIVDAV 256
           ++NP  L  E+I    +N +F   LI E GRCF   R  LD ++ L    ++DA+
Sbjct: 370 INNPITLLCEQIGIKYRNSNFFCPLIDENGRCFTLERKELDDQVDLHYNNVLDAI 424

>SGO1_YEAST (Q08490) Shugoshin|
          Length = 590

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +1

Query: 133 EDEDLFETSS-SFSCDSDDEAQFSDGEDQFVPASPPARRLNSDGVYDLSSIKAELSVK*V 309
           E+E + E SS     +S + AQ  +  D   P        NSD V + ++   E S+   
Sbjct: 211 ENEPMMENSSVEVPAESHESAQVEETIDALNPEEE-----NSDSVSNFTNSIIEYSI--- 262

Query: 310 PQETPSFFMYQQSSKMEVFPDRADLLS 390
           P+E P+   +  SSK+E+F D  ++LS
Sbjct: 263 PEENPTEPEHS-SSKLEIFNDSTNMLS 288

>RGS3_HUMAN (P49796) Regulator of G-protein signaling 3 (RGS3) (RGP3)|
          Length = 1198

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 46   RPSIVLPEAEKLATMGRSAGAPQVLSAHQED-EDLFETSSSFSCDSDDEAQFSD 204
            RP+ V+PE    +T  + AGA Q  S  +ED E+  E       + D++   SD
Sbjct: 851  RPAFVIPEVRLDSTYSQKAGAEQGCSGDEEDAEEAEEVEEGEEGEEDEDEDTSD 904

>E1A_ADE12 (P03259) Early E1A 29.5 kDa protein|
          Length = 266

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 19  FVTLLLLEARPSIVLPEAEKLATMGRSAGAPQVLSAHQEDEDLFETSSSFSCDSDDEAQF 198
           F   L+L A   + LPE   L+ +    G   +   H ED DL      F C   ++ Q 
Sbjct: 65  FPESLILAASEGLFLPEPPVLSPVCEPIGGECMPQLHPEDMDLLCYEMGFPCSDSEDEQD 124

Query: 199 SDG 207
            +G
Sbjct: 125 ENG 127

>MRE11_NEUCR (Q9C291) Double-strand break repair protein mus-23 (Recombinational|
           repair protein mus-23)
          Length = 760

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 40  EARPSIVLPEAEKLATMGRSAGAPQVLSAHQEDEDLFETSSSFSCDSDDEAQ--FSDGED 213
           +A P+     A+K    GR    P V S  +E+ED  E       ++D+E +    + ++
Sbjct: 645 KAAPAKKAAPAKKAPARGRKKKTPFVDSDEEEEEDYPEDDDEEEEEADEEEEDVIMEDDE 704

Query: 214 QFVPASPPARRLNS 255
           +  PA PP  +  S
Sbjct: 705 EDPPAPPPKPKATS 718

>RPC4_YEAST (P25441) DNA-directed RNA polymerase III 47 kDa polypeptide (EC|
           2.7.7.6) (C53) (RNA polymerase C subunit 4)
          Length = 422

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 28/90 (31%), Positives = 39/90 (43%)
 Frame = +1

Query: 58  VLPEAEKLATMGRSAGAPQVLSAHQEDEDLFETSSSFSCDSDDEAQFSDGEDQFVPASPP 237
           V  +++K   MG+   A  ++    EDED  E+  S   D DDE   S   +Q  P   P
Sbjct: 150 VASKSKKKFNMGKEFEARNLI----EDEDDGESEKSSDVDMDDEEWRSKRIEQLFPVR-P 204

Query: 238 ARRLNSDGVYDLSSIKAELSVK*VPQETPS 327
            R  + D       I+  LS K   + TPS
Sbjct: 205 VRVRHEDVETVKREIQEALSEKPTREPTPS 234

>TCPA_YEAST (P12612) T-complex protein 1 subunit alpha (TCP-1-alpha)|
           (CCT-alpha)
          Length = 559

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 73  EKLATMGRSAGAPQVLS-AHQEDEDLFETSSSFSCDSDDEAQFSDGE 210
           E L  + R+ GA  V S ++ E E+ FE+S    CD   +A+FSD E
Sbjct: 324 EDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDE 370

>MYO5C_HUMAN (Q9NQX4) Myosin-5C (Myosin Vc)|
          Length = 1742

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +1

Query: 28   LLLLEARPSIVLPEAEKLATMGRSA--GAPQVLSAHQEDEDLFETSSSFSCDSDDEAQFS 201
            +L +  R +  L +A  L ++  S   G  QV+  H ED ++     S +C   +  +  
Sbjct: 1399 ILFMCVRYADSLNDANMLKSLMNSTINGIKQVVKEHLEDFEMLSFWLSNTCHFLNCLKQY 1458

Query: 202  DGEDQFVPASPPARRLNSDGVYDLSSIKAELS 297
             GE++F+  + P +  N    +DLS  +  LS
Sbjct: 1459 SGEEEFMKHNSPQQNKNCLNNFDLSEYRQILS 1490

>PEA3_BRARE (Q9PUQ1) ETS domain-containing transcription factor PEA3|
          Length = 494

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 130 QEDEDLFETSSSFSCDSDDEAQFSDGEDQFVP 225
           QE EDLF+  S        EAQ  D ++QFVP
Sbjct: 46  QESEDLFQDLSQLQETWLTEAQVPDSDEQFVP 77

>PAR6B_MOUSE (Q9JK83) Partitioning defective 6 homolog beta (PAR-6 beta)|
           (PAR-6B)
          Length = 371

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = +1

Query: 4   NSKHIFVTLLLLEARPSIVLPE----AEKLATMGRSAGAPQVLSAHQEDEDLFETSSSFS 171
           NS+++ +T+     R ++V       +   +T     G PQ + A  E ED         
Sbjct: 238 NSRNLIITVRPANQRNNVVRNSRTSGSSSQSTDNSLLGFPQQVEASFEPEDQ-------D 290

Query: 172 CDSDDEAQFSDGEDQFVPASPPARRLNSDGVYDLS 276
            D DD      GE Q +P + PA+ L S    +LS
Sbjct: 291 SDEDDIIIEDSGEPQQIPKATPAQSLESLTQIELS 325

>NANK_PASMU (Q9CKB3) Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc|
           kinase)
          Length = 297

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 408 NPPFLQREKISTVRKNFHFATLLIHEEGRCFLRNLLDGELGLDGRQIV 265
           NPP   ++     RKN   AT LI          + D  +GLD +++V
Sbjct: 191 NPPCTPKQAFELFRKNDEKATALIQRSASAIANLIADLVIGLDVQKVV 238

>Y1922_AQUAE (O67751) UPF0245 protein aq_1922|
          Length = 331

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 228 LPAGAATELRRRLRSVVHQGRALRQVSSSGNTFLLHVSTE 347
           LP G    +     S++H+G  +   +SSG  FL+H  TE
Sbjct: 163 LPLGLGDRVCVDTISLLHRGEGMLVGNSSGGMFLVHAETE 202

>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52|
          Length = 435

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 46  RPSIVLPEAEKLATMGRSAGAPQVLSAHQEDEDLFETSSSFSCDSDDEAQFSDGEDQFVP 225
           RP  + PEA   A         +  S+  + EDL + S  FS +  D+   + G  +  P
Sbjct: 203 RPGAMRPEAAHAAPAPSEPPLERPRSSENDQEDLLDDSFMFSDELQDDDLINIGSAKKAP 262

Query: 226 ASPP 237
           +  P
Sbjct: 263 SGVP 266

>M4K1_HUMAN (Q92918) Mitogen-activated protein kinase kinase kinase kinase 1|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 1) (MEK
           kinase kinase 1) (MEKKK 1) (Hematopoietic progenitor
           kinase)
          Length = 833

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -2

Query: 465 HLTSDMHAKDWDLPS*YLDNPPFLQREKISTVRKNFHFATLLIHEEGRCFLR 310
           HLT+      W+ PS  LD PP L  +K    RK      LL+     C LR
Sbjct: 449 HLTAHSEPSLWNPPSRELDKPPLLPPKKEKMKRKG---CALLVKLFNGCPLR 497

>FIP1_YEAST (P45976) Pre-mRNA polyadenylation factor FIP1|
          Length = 327

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 22/64 (34%), Positives = 28/64 (43%)
 Frame = +1

Query: 109 PQVLSAHQEDEDLFETSSSFSCDSDDEAQFSDGEDQFVPASPPARRLNSDGVYDLSSIKA 288
           P      + DED++  SS    DSD E   S G D   P    A+ L+S      SS K 
Sbjct: 56  PATARDDRSDEDIYSDSSDDDSDSDLEVIISLGPD---PTRLDAKLLDSYSTAATSSSKD 112

Query: 289 ELSV 300
            +SV
Sbjct: 113 VISV 116

>CAR11_HUMAN (Q9BXL7) Caspase recruitment domain-containing protein 11|
           (CARD-containing MAGUK protein 3) (Carma 1)
          Length = 1147

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 154 TSSSFSCDSDDEAQFSDGEDQFVPASPPARRLNSDGVYDLSSIKAELSVK 303
           T+   + DS    +  +    F+P  PP RR+N  G+  L   K+ +S+K
Sbjct: 462 TNGQEADDSSTSEESPEDSKYFLPYHPPQRRMNLKGI-QLQRAKSPISLK 510


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,812,880
Number of Sequences: 219361
Number of extensions: 980728
Number of successful extensions: 3821
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3813
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)