ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal2a03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1181 bits (596), Expect = 0.0 Identities = 626/632 (99%), Gaps = 3/632 (0%) Strand = Plus / Plus Query: 12 ccggcttctacgccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcg 71 |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| Sbjct: 175 ccggcttctacgccgaccaacttcctcggg-aag-aagctcaag-aagcaggtgacctcg 231 Query: 72 gccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggag 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 232 gccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggag 291 Query: 132 aacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgac 191 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 292 aacatcgacgagaagaggaacaccgacaagtggaagggtcttgctaccgatatctccgac 351 Query: 192 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 352 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 411 Query: 252 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 412 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 471 Query: 312 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 472 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 531 Query: 372 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 532 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 591 Query: 432 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 592 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 651 Query: 492 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 652 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 711 Query: 552 gagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggt 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 712 gagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggt 771 Query: 612 aagatgtgctgcctcttcatcaacgatcttga 643 |||||||||||||||||||||||||||||||| Sbjct: 772 aagatgtgctgcctcttcatcaacgatcttga 803
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 1086 bits (548), Expect = 0.0 Identities = 614/632 (97%), Gaps = 3/632 (0%) Strand = Plus / Plus Query: 12 ccggcttctacgccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcg 71 |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| Sbjct: 95 ccggcttctacgccgaccaacttcctcggg-aag-aagctcaag-aagcaggtgacctcg 151 Query: 72 gccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggag 131 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 152 gccgtgaactaccatggcaagagctccaaggccaacaggttcacggtcatggcagcggaa 211 Query: 132 aacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgac 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 aacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgac 271 Query: 192 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 251 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 272 gaccagcaggacatcaccagagggaagggcatcgtggactccctcttccaggcgcccact 331 Query: 252 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 311 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct: 332 ggcgacggcacccacgaggccgtcctcagctcatacgagtacgtcagccagggactcaag 391 Query: 312 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 451 Query: 372 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 431 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 452 cttgttgtccatctctccaagaacttcatgaccctgcccaacatcaagatcccactcatc 511 Query: 432 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 491 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 512 ttgggtatctggggaggcaagggtcaaggaaaatccttccagtgtgagcttgtcttcgcc 571 Query: 492 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 551 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 572 aagatgggcatcaacccaatcatgatgagtgccggagagctggagagtggcaacgccgga 631 Query: 552 gagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggt 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 gagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggt 691 Query: 612 aagatgtgctgcctcttcatcaacgatcttga 643 |||||||||||||||||||||||||||||||| Sbjct: 692 aagatgtgctgcctcttcatcaacgatcttga 723
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 1063 bits (536), Expect = 0.0 Identities = 545/548 (99%) Strand = Plus / Plus Query: 96 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 360 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 420 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 480 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 540 Query: 636 gatcttga 643 |||||||| Sbjct: 541 gatcttga 548
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 741 bits (374), Expect = 0.0 Identities = 401/406 (98%), Gaps = 3/406 (0%) Strand = Plus / Plus Query: 14 ggcttctacgccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggc 73 |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcggg-aag-aagctcaag-aagcaggtgacctcggc 5574 Query: 74 cgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaa 133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5575 cgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaa 5634 Query: 134 catcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacga 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5635 catcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacga 5694 Query: 194 ccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggg 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5695 ccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggg 5754 Query: 254 cgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaa 313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5755 gcacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaa 5814 Query: 314 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5815 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 5874 Query: 374 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 419 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5875 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 474 bits (239), Expect = e-130 Identities = 418/477 (87%), Gaps = 3/477 (0%) Strand = Plus / Plus Query: 161 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 220 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 221 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 280 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 281 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 340 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 341 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 400 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 401 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 460 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238 Query: 461 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 520 || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3239 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 3298 Query: 521 tgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 580 ||||| ||||||||||| || ||| || ||||| |||||||| ||| ||||| |||| Sbjct: 3299 cgccggtgagctggagagcggcaac---ggcgagccggccaagctgatccggcagaggta 3355 Query: 581 ccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacga 637 ||| ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 3356 ccgcgaggcggccgacattatcaacaagggcaagatgtgctgcctcttcatcaacga 3412 Score = 274 bits (138), Expect = 3e-70 Identities = 138/138 (100%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6408 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 6467 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6468 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 6527 Query: 626 cttcatcaacgatcttga 643 |||||||||||||||||| Sbjct: 6528 cttcatcaacgatcttga 6545 Score = 174 bits (88), Expect = 2e-40 Identities = 88/88 (100%) Strand = Plus / Plus Query: 418 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 478 agcttgtgttcgccaagatgggcatcaa 505 |||||||||||||||||||||||||||| Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 710 bits (358), Expect = 0.0 Identities = 451/482 (93%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 557 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 616 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 617 atgagtgccggagagctggagagcggcaacgccggagagccagccaagctcatcaggcag 676 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 677 cggtaccgcgaggccgcagacatgatcaagaagggcaagatgtgctgcctcttcatcaac 736 Query: 636 ga 637 || Sbjct: 737 ga 738 Score = 127 bits (64), Expect = 5e-26 Identities = 102/113 (90%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 12 ccggcttctacgccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcg 71 |||||||| |||||||||| ||||||||| | ||||||||| ||||||||||||||| Sbjct: 113 ccggcttccacgccgaccagcttcctcggcaa--caagctcaag-aagcaggtgacctcg 169 Query: 72 gccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggc 124 || |||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct: 170 gcagtgaactaccatggcaagagcttcaaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 690 bits (348), Expect = 0.0 Identities = 448/482 (92%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 547 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 606 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 607 atgagtgccggagagctggagagcggcaacgccggagagccagccaagctcatcaggcag 666 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 667 cggtaccgcgaggccgcagacatgatcaagaagggcaagatgtgctgcctcttcatcaac 726 Query: 636 ga 637 || Sbjct: 727 ga 728 Score = 121 bits (61), Expect = 3e-24 Identities = 101/113 (89%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 12 ccggcttctacgccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcg 71 |||||||| ||||| |||| ||||||||| | ||||||||| ||||||||||||||| Sbjct: 103 ccggcttccacgccnaccagcttcctcggcaa--caagctcaag-aagcaggtgacctcg 159 Query: 72 gccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggc 124 || |||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct: 160 gcagtgaactaccatggcaagagcttcaaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 613 bits (309), Expect = e-172 Identities = 441/485 (90%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 504 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 563 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 564 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 623 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 624 cggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaac 683 Query: 636 gatct 640 ||||| Sbjct: 684 gatct 688 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 72 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 128 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 129 catggcaagagctccaacatcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 613 bits (309), Expect = e-172 Identities = 441/485 (90%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 541 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 600 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 601 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 660 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 661 cggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaac 720 Query: 636 gatct 640 ||||| Sbjct: 721 gatct 725 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 109 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 165 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 166 catggcaagagctccaacatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 613 bits (309), Expect = e-172 Identities = 441/485 (90%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 540 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 599 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 600 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 659 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 660 cggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaac 719 Query: 636 gatct 640 ||||| Sbjct: 720 gatct 724 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 108 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 164 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 165 catggcaagagctccaacatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 613 bits (309), Expect = e-172 Identities = 441/485 (90%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 324 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 383 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 384 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 443 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 444 cggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaac 503 Query: 636 gatct 640 ||||| Sbjct: 504 gatct 508
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 613 bits (309), Expect = e-172 Identities = 441/485 (90%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 545 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 604 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 605 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 664 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 665 cggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaac 724 Query: 636 gatct 640 ||||| Sbjct: 725 gatct 729 Score = 75.8 bits (38), Expect = 2e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 57 aagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttca 114 ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 143 aagcaggtgacatcggcggtgaactaccatggcaagagctccaacatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 613 bits (309), Expect = e-172 Identities = 441/485 (90%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 539 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 598 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 599 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 658 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 659 cggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaac 718 Query: 636 gatct 640 ||||| Sbjct: 719 gatct 723 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 107 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 163 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 164 catggcaagagctccaacatcaacaggttca 194
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 605 bits (305), Expect = e-170 Identities = 440/485 (90%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 552 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 611 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||||||||| Sbjct: 612 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 671 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 672 cggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaac 731 Query: 636 gatct 640 ||||| Sbjct: 732 gatct 736 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 120 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 176 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 177 catggcaagagctccaacatcaacaggttca 207
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 593 bits (299), Expect = e-166 Identities = 439/485 (90%), Gaps = 3/485 (0%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 512 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 571 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||||||||||||||| || ||| |||||||| |||||||| ||||||||| Sbjct: 572 atgagcgccggagagctggagagcggcaac---ggagagccggccaagctgatcaggcag 628 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 629 cggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaac 688 Query: 636 gatct 640 ||||| Sbjct: 689 gatct 693 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 80 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 136 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 137 catggcaagagctccaacatcaacaggttca 167
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 517 bits (261), Expect = e-143 Identities = 423/477 (88%) Strand = Plus / Plus Query: 161 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 220 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 221 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 280 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 281 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 340 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 341 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 400 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 401 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 460 ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| || || Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacaggg 516 Query: 461 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 520 || || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 517 caagtcgttccagtgcgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 576 Query: 521 tgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 580 ||||||||||||||||| || ||||| || ||||| |||||||| ||| ||||| |||| Sbjct: 577 cgccggagagctggagagcggcaacgccggcgagccggccaagctgatccggcagaggta 636 Query: 581 ccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacga 637 ||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 637 ccgcgaggctgccgacattatcaagaagggcaagatgtgctgcctcttcatcaacga 693
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 478 bits (241), Expect = e-131 Identities = 331/361 (91%) Strand = Plus / Plus Query: 280 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 339 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 340 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 399 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 400 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 459 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 460 gaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatga 519 ||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct: 507 gaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatgatga 566 Query: 520 gtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggt 579 | ||||||||||||||||| || ||||| |||||||| || ||||| ||||||||||||| Sbjct: 567 gcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcagcggt 626 Query: 580 accgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacgatc 639 |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 627 accgtgaggcggcagacatcatcaagaaggggaagatgtgctgcctcttcatcaacgatc 686 Query: 640 t 640 | Sbjct: 687 t 687 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 216 aagggcatcgtggactcgctcttccaggc 244 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Plus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 108 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 164 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 165 catggcaagagctccaacatcaacaggttca 195
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 474 bits (239), Expect = e-130 Identities = 418/477 (87%), Gaps = 3/477 (0%) Strand = Plus / Plus Query: 161 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 220 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 221 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 280 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 281 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 340 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 341 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 400 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 401 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 460 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669 Query: 461 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 520 || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 670 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 729 Query: 521 tgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 580 ||||| ||||||||||| || ||| || ||||| |||||||| ||| ||||| |||| Sbjct: 730 cgccggtgagctggagagcggcaac---ggcgagccggccaagctgatccggcagaggta 786 Query: 581 ccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacga 637 ||| ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 787 ccgcgaggcggccgacattatcaacaagggcaagatgtgctgcctcttcatcaacga 843
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 391 bits (197), Expect = e-105 Identities = 386/449 (85%) Strand = Plus / Plus Query: 192 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 251 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 252 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 311 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 312 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 371 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 372 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 431 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 432 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 491 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 534 Query: 492 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 551 |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct: 535 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 594 Query: 552 gagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggt 611 ||||| || ||||| ||| ||||||||||||||||||| || ||||| |||| |||||| Sbjct: 595 gagccggcgaagctgatccggcagcggtaccgtgaggccgccgacatcatcaggaagggg 654 Query: 612 aagatgtgctgcctcttcatcaacgatct 640 ||||||||||||||||||||||||||||| Sbjct: 655 aagatgtgctgcctcttcatcaacgatct 683
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 391 bits (197), Expect = e-105 Identities = 386/449 (85%) Strand = Plus / Plus Query: 192 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 251 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 252 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 311 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 312 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 371 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 372 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 431 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 432 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 491 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 397 Query: 492 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 551 |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct: 398 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 457 Query: 552 gagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggt 611 ||||| || ||||| ||| ||||||||||||||||||| || ||||| |||| |||||| Sbjct: 458 gagccggcgaagctgatccggcagcggtaccgtgaggccgccgacatcatcaggaagggg 517 Query: 612 aagatgtgctgcctcttcatcaacgatct 640 ||||||||||||||||||||||||||||| Sbjct: 518 aagatgtgctgcctcttcatcaacgatct 546
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 385 bits (194), Expect = e-103 Identities = 410/482 (85%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| ||||| || ||||| || ||||||||||||||||||| |||||||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcacccccatcatg 572 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||| Sbjct: 573 atgagcgccggcgagctggagagcggcaacgccggagagcccgccaagctcatcaggcag 632 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 || ||||||||||| | ||| | ||||||||||| ||||||| |||||||||||||||| Sbjct: 633 cgctaccgtgaggcctccgacctcatcaagaagggcaagatgtcctgcctcttcatcaac 692 Query: 636 ga 637 || Sbjct: 693 ga 694 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 59 gcaggtgacctcggccgtgaactaccatggcaagagctcca 99 ||||||| || ||||||||| |||||||||||||||||||| Sbjct: 107 gcaggtgtccgcggccgtgacctaccatggcaagagctcca 147
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 383 bits (193), Expect = e-103 Identities = 385/449 (85%) Strand = Plus / Plus Query: 192 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 251 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 252 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 311 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 312 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 371 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 372 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 431 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 432 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 491 |||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||| Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaacttgtgttcgcc 427 Query: 492 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 551 |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct: 428 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 487 Query: 552 gagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggt 611 ||||| || ||||| ||| ||||||||||||||||||| || ||||| |||| |||||| Sbjct: 488 gagccggcgaagctgatccggcagcggtaccgtgaggccgccgacatcatcaggaagggg 547 Query: 612 aagatgtgctgcctcttcatcaacgatct 640 ||||||||||||||||||||||||||||| Sbjct: 548 aagatgtgctgcctcttcatcaacgatct 576
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 333 bits (168), Expect = 4e-88 Identities = 401/482 (83%) Strand = Plus / Plus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 276 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 335 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 336 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 395 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 396 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 455 |||||||||||||| ||||||||| | || |||||| |||||||| ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512 Query: 456 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 515 || |||||||| ||||| || ||||| || ||||||||||||||||||| |||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcannnnnatcatg 572 Query: 516 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 575 ||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||| Sbjct: 573 atgagcgccggcgagctggagagcggcaacgccggagagcccgccaagctcatcaggcag 632 Query: 576 cggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaac 635 || ||||||||||| | ||| | ||||||||||| |||||||||||||||||||||||| Sbjct: 633 cgctaccgtgaggcctccgacctcatcaagaagggcaagatgtgctgcctcttcatcaac 692 Query: 636 ga 637 || Sbjct: 693 ga 694 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 59 gcaggtgacctcggccgtgaactaccatggcaagagctcca 99 ||||||| || ||||||||| |||||||||||||||||||| Sbjct: 107 gcaggtgtccgcggccgtgacctaccatggcaagagctcca 147
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 317 bits (160), Expect = 3e-83 Identities = 262/296 (88%) Strand = Plus / Plus Query: 345 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 404 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 405 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 464 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 465 tcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgcc 524 || ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 207 tccttccaatgtgaacttgtgttcgccaagatgggaatcaaccccatcatgatgagcgcc 266 Query: 525 ggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtaccgt 584 || ||||||||||| || ||||| |||||||| || ||||| ||| |||||||||||||| Sbjct: 267 ggtgagctggagagcggcaacgccggagagccggcgaagctgatccggcagcggtaccgt 326 Query: 585 gaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacgatct 640 ||||| || ||||| |||| |||||| ||||||||||||||||||||||||||||| Sbjct: 327 gaggccgccgacatcatcaggaaggggaagatgtgctgcctcttcatcaacgatct 382
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 315 bits (159), Expect = 1e-82 Identities = 399/479 (83%) Strand = Plus / Plus Query: 162 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 221 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 222 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 281 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 282 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 341 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 342 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 401 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 402 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 461 ||||| || ||||| ||| | || || ||||||||||| ||||||||||| ||||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579 Query: 462 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 521 ||||| ||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 580 aaatctttccaatgtgagcttgtctttgccaagatgggaatcaaccccattatgatgagt 639 Query: 522 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtac 581 |||||||| |||| ||||||||||| ||||| ||||||||| | |||||||| ||||| Sbjct: 640 gccggagaattggaaagtgggaacgccggagaaccagccaagttgatcaggcaaaggtac 699 Query: 582 cgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacgatct 640 |||||||| || ||||| |||||||| || || ||||| |||||||| ||||||||||| Sbjct: 700 cgtgaggccgccgacattatcaagaaagggaaaatgtgttgcctctttatcaacgatct 758
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 736 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 795 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 796 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 855 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 856 aacgatcttga 866
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 736 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 795 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 796 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 855 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 856 aacgatcttga 866
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 765 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 824 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 825 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 884 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 885 aacgatcttga 895
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 647 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 706 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 707 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 766 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 767 aacgatcttga 777
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 650 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 709 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 710 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 769 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 770 aacgatcttga 780
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 638 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 639 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 698 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 699 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 758 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 759 aacgatcttga 769
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 647 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 706 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 707 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 766 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 767 aacgatcttga 777
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 650 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 709 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 710 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 769 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 770 aacgatcttga 780
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 299 bits (151), Expect = 6e-78 Identities = 316/371 (85%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 765 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 824 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||||| Sbjct: 825 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttcatc 884 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 885 aacgatcttga 895
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 297 bits (150), Expect = 2e-77 Identities = 246/278 (88%) Strand = Plus / Plus Query: 360 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 419 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 420 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 479 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 480 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 539 || || ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccggcgagctggagagc 201 Query: 540 gggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatg 599 || ||||| |||||||| |||||||||||||||||||| ||||||||||| | ||| | Sbjct: 202 ggcaacgccggagagcccgccaagctcatcaggcagcgctaccgtgaggcctccgacctc 261 Query: 600 atcaagaagggtaagatgtgctgcctcttcatcaacga 637 ||||||||||| ||||||| |||||||||||||||||| Sbjct: 262 atcaagaagggcaagatgtcctgcctcttcatcaacga 299
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 293 bits (148), Expect = 4e-76 Identities = 283/328 (86%) Strand = Plus / Plus Query: 313 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 372 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 373 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 432 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 433 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 492 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 493 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 552 ||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || |||| Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagctggaaagtggaaatgcaggag 670 Query: 553 agccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggta 612 | || |||||||| |||||||| |||||||||| ||||| ||||| ||||||||||||| Sbjct: 671 aacctgccaagctgatcaggcaaaggtaccgtgaagctgctgacattatcaagaagggta 730 Query: 613 agatgtgctgcctcttcatcaacgatct 640 | ||||||||||| |||||||||||||| Sbjct: 731 aaatgtgctgcctgttcatcaacgatct 758
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 291 bits (147), Expect = 1e-75 Identities = 315/371 (84%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 561 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| | Sbjct: 562 atgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatccgt 621 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||| ||||| Sbjct: 622 cagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcctcatc 681 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 682 aacgatcttga 692
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 280 bits (141), Expect = 5e-72 Identities = 273/317 (86%) Strand = Plus / Plus Query: 324 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 383 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 384 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 443 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 444 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 503 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 435 Query: 504 aaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaag 563 |||||||||||||||||||||||||| ||||| ||||| ||||| || || ||||||||| Sbjct: 436 aaccccatcatgatgagtgccggagaactggaaagtggaaacgccggtgaaccagccaag 495 Query: 564 ctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgc 623 | |||||||| |||||||||| ||||| ||||| ||||| ||||| || |||||| | Sbjct: 496 ttgatcaggcaaaggtaccgtgaagctgccgacataatcaaaaagggcaaaatgtgcgcc 555 Query: 624 ctcttcatcaacgatct 640 |||||||| |||||||| Sbjct: 556 ctcttcattaacgatct 572
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 314 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 373 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 374 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 433 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 434 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 493 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 109256 Query: 494 gatgggcatcaa 505 |||||| ||||| Sbjct: 109255 gatggggatcaa 109244 Score = 188 bits (95), Expect = 2e-44 Identities = 125/135 (92%) Strand = Plus / Minus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||| Sbjct: 109158 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 109099 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 109098 gatcaggcagcggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcct 109039 Query: 626 cttcatcaacgatct 640 ||||||||||||||| Sbjct: 109038 cttcatcaacgatct 109024 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 276 ctcagctcctacgagtacgtcagccaggg 304 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 161 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 220 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 221 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 271 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Minus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 109838 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 109782 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 109781 catggcaagagctccaacatcaacaggttca 109751 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 549 ggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaag 608 |||||||| || ||||| ||| ||||||||||||| ||||| || ||||||||||| ||| Sbjct: 112778 ggagagcccgcgaagctgatccggcagcggtaccgcgaggcggcggacatgatcaacaag 112719 Query: 609 ggtaagatgtgctgcctcttcatcaacga 637 || ||||||||| || ||||||||||| Sbjct: 112718 gggaagatgtgcgtgctgttcatcaacga 112690 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 505 ||||||||||| || || |||||||||||||| ||||| Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 314 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 373 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 374 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 433 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 434 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 493 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 31133 Query: 494 gatgggcatcaa 505 |||||| ||||| Sbjct: 31132 gatggggatcaa 31121 Score = 188 bits (95), Expect = 2e-44 Identities = 125/135 (92%) Strand = Plus / Minus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||| Sbjct: 31035 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 30976 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 30975 gatcaggcagcggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcct 30916 Query: 626 cttcatcaacgatct 640 ||||||||||||||| Sbjct: 30915 cttcatcaacgatct 30901 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 276 ctcagctcctacgagtacgtcagccaggg 304 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 161 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 220 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 221 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 271 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Minus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 31715 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 31659 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 31658 catggcaagagctccaacatcaacaggttca 31628 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 549 ggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaag 608 |||||||| || ||||| ||| ||||||||||||| ||||| || ||||||||||| ||| Sbjct: 34655 ggagagcccgcgaagctgatccggcagcggtaccgcgaggcggcggacatgatcaacaag 34596 Query: 609 ggtaagatgtgctgcctcttcatcaacga 637 || ||||||||| || ||||||||||| Sbjct: 34595 gggaagatgtgcgtgctgttcatcaacga 34567 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 505 ||||||||||| || || |||||||||||||| ||||| Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 314 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 373 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 374 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 433 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 434 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 493 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28304395 Query: 494 gatgggcatcaa 505 |||||| ||||| Sbjct: 28304394 gatggggatcaa 28304383 Score = 188 bits (95), Expect = 2e-44 Identities = 125/135 (92%) Strand = Plus / Minus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||| Sbjct: 28304297 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 28304238 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 28304237 gatcaggcagcggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcct 28304178 Query: 626 cttcatcaacgatct 640 ||||||||||||||| Sbjct: 28304177 cttcatcaacgatct 28304163 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 276 ctcagctcctacgagtacgtcagccaggg 304 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 161 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 220 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 221 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 271 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Minus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 28304977 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 28304921 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 28304920 catggcaagagctccaacatcaacaggttca 28304890 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 549 ggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaag 608 |||||||| || ||||| ||| ||||||||||||| ||||| || ||||||||||| ||| Sbjct: 28307917 ggagagcccgcgaagctgatccggcagcggtaccgcgaggcggcggacatgatcaacaag 28307858 Query: 609 ggtaagatgtgctgcctcttcatcaacga 637 || ||||||||| || ||||||||||| Sbjct: 28307857 gggaagatgtgcgtgctgttcatcaacga 28307829 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 505 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 314 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 373 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 374 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 433 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 434 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 493 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28286844 Query: 494 gatgggcatcaa 505 |||||| ||||| Sbjct: 28286843 gatggggatcaa 28286832 Score = 188 bits (95), Expect = 2e-44 Identities = 125/135 (92%) Strand = Plus / Minus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||| Sbjct: 28286746 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 28286687 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 28286686 gatcaggcagcggtaccgtgaggcggcagacatcatcaagaaggggaagatgtgctgcct 28286627 Query: 626 cttcatcaacgatct 640 ||||||||||||||| Sbjct: 28286626 cttcatcaacgatct 28286612 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 156 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 215 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 216 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 275 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 276 ctcagctcctacgagtacgtcagccaggg 304 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 161 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 220 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 221 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 271 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 79.8 bits (40), Expect = 1e-11 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand = Plus / Minus Query: 24 ccgaccaacttcctcgggnaagnaagctcaagnaagcaggtgacctcggccgtgaactac 83 |||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||| ||||||||| Sbjct: 28287426 ccgaccaacttcct-ggggaag-aagctgaag-aagcaggtgacatcggcggtgaactac 28287370 Query: 84 catggcaagagctccaaggccaacaggttca 114 ||||||||||||||||| ||||||||||| Sbjct: 28287369 catggcaagagctccaacatcaacaggttca 28287339 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 549 ggagagccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaag 608 |||||||| || ||||| ||| ||||||||||||| ||||| || ||||||||||| ||| Sbjct: 28290366 ggagagcccgcgaagctgatccggcagcggtaccgcgaggcggcggacatgatcaacaag 28290307 Query: 609 ggtaagatgtgctgcctcttcatcaacga 637 || ||||||||| || ||||||||||| Sbjct: 28290306 gggaagatgtgcgtgctgttcatcaacga 28290278 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 505 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 266 bits (134), Expect = 8e-68 Identities = 260/302 (86%) Strand = Plus / Plus Query: 342 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 401 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 402 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 461 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 462 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 521 ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 596 aaatctttccagtgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 655 Query: 522 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtac 581 |||||||| ||||||| || ||||| |||||||| || ||| | |||||||| |||| Sbjct: 656 gccggagaattggagagcggcaacgcaggagagcccgcgaagttgatcaggcaacggtgt 715 Query: 582 cgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacgatctt 641 |||||||| || ||||| ||||||||||| ||||||| ||||| || ||||| |||||| Sbjct: 716 cgtgaggcggccgacatcatcaagaagggaaagatgtcttgcctatttatcaatgatctt 775 Query: 642 ga 643 || Sbjct: 776 ga 777
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 254 bits (128), Expect = 3e-64 Identities = 278/328 (84%) Strand = Plus / Plus Query: 313 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 372 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 373 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 432 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 433 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 492 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 493 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 552 ||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || |||| Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagctggaaagtggaaatgcaggag 670 Query: 553 agccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggta 612 |||| || ||||| |||||||| |||| ||||| || || || || ||||||||||| | Sbjct: 671 agcccgcaaagctgatcaggcaaaggtatcgtgaagcagctgatatcatcaagaagggaa 730 Query: 613 agatgtgctgcctcttcatcaacgatct 640 | ||||||||||| || ||||||||||| Sbjct: 731 aaatgtgctgcctgtttatcaacgatct 758
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 252 bits (127), Expect = 1e-63 Identities = 301/359 (83%) Strand = Plus / Plus Query: 282 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 341 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 342 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 401 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 402 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 461 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 462 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 521 ||||||||||||||||| ||||| ||| |||||||| ||||||||||| ||||||||| Sbjct: 576 aaatcattccagtgtgaacttgtcttcagaaagatgggaatcaaccccattatgatgagt 635 Query: 522 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtac 581 || ||||| |||| ||||| || || ||||||||||||||| | || ||||| ||||| Sbjct: 636 gctggagaattggaaagtggaaatgcaggagagccagccaagttgattaggcaaaggtac 695 Query: 582 cgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacgatct 640 | || || ||||| || |||| ||||| || ||||| |||||||||||||||||||| Sbjct: 696 agagaagcagcagaaatcatcagaaagggaaatatgtgttgcctcttcatcaacgatct 754
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 248 bits (125), Expect = 2e-62 Identities = 254/297 (85%) Strand = Plus / Plus Query: 324 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 383 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 384 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 443 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 444 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 503 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 436 Query: 504 aaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaag 563 |||||||||||||||||||||||||| ||||| ||||| ||||| || || ||||||||| Sbjct: 437 aaccccatcatgatgagtgccggagaactggaaagtggaaacgccggtgaaccagccaag 496 Query: 564 ctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgc 620 | |||||||| |||||||||| || || ||||| ||||| ||||| || |||||| Sbjct: 497 ttgatcaggcaaaggtaccgtgaagccgccgacataatcaaaaagggcaaaatgtgc 553
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 248 bits (125), Expect = 2e-62 Identities = 315/373 (84%), Gaps = 4/373 (1%) Strand = Plus / Plus Query: 273 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 332 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 333 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 392 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatct-ggggaggcaa 451 |||||| |||| ||||| ||||||||| | ||||| || ||||| ||| |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggc-tctcggggaggcaa 569 Query: 452 gggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccat 511 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| || Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaat 629 Query: 512 catgatgagtgccggagagctggagagtgggaacgctggag-agccagccaagctcatca 570 |||||||||||| |||||||| |||||||| ||||| |||| || | | |||||| ||| Sbjct: 630 catgatgagtgctggagagcttgagagtggaaacgcaggagaagtccg-caagcttatcc 688 Query: 571 ggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttca 630 | ||| ||||||||||||| || ||| ||||||||||||| |||||||| || ||||||| Sbjct: 689 gtcagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttca 748 Query: 631 tcaacgatcttga 643 ||||||||||||| Sbjct: 749 tcaacgatcttga 761
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 244 bits (123), Expect = 3e-61 Identities = 257/299 (85%), Gaps = 2/299 (0%) Strand = Plus / Plus Query: 343 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 402 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 403 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 462 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 463 aatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtg 522 |||| ||||| ||||||||||||||||||||| | || || ||||||||||||||||||| Sbjct: 750 aatccttccaatgtgagcttgtgttcgccaagttaggaataaaccccatcatgatgagtg 809 Query: 523 ccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtacc 582 ||||||| |||| ||||| || || ||||||||||| ||| | |||||||| |||||| Sbjct: 810 ccggagaattggaaagtggaaatgcaggagagccagctaagttgatcaggcaaaggtacc 869 Query: 583 gtgaggctgcagacatgatcaagaagggtaagatgtgctgc-ctcttcatcaacgatct 640 ||||||| |||||| |||| |||||||||||||| ||| || |||||||||||||| Sbjct: 870 gtgaggcagcagacttgattgctaagggtaagatgtg-tgctctattcatcaacgatct 927
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 236 bits (119), Expect = 7e-59 Identities = 259/303 (85%), Gaps = 2/303 (0%) Strand = Plus / Plus Query: 342 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 401 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 402 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 461 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 462 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 521 || || ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 589 aagtctttccaatgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 648 Query: 522 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtac 581 || |||||| |||| ||||| || || ||||||||||| || | ||||||||| | ||| Sbjct: 649 gctggagagttggaaagtggaaatgccggagagccagcaaaattgatcaggcagagatac 708 Query: 582 cgtgaggctgcagacatgatcaagaagggtaagatgtgctgc-ctcttcatcaacgatct 640 ||||| |||||||| ||||| ||||| |||||||| ||| || |||||||||||||| Sbjct: 709 cgtgaagctgcagatttgatcgccaagggaaagatgtg-tgctctattcatcaacgatct 767 Query: 641 tga 643 ||| Sbjct: 768 tga 770 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 162 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 220 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 226 bits (114), Expect = 7e-56 Identities = 222/258 (86%) Strand = Plus / Plus Query: 341 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 400 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 401 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 460 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 461 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 520 ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 634 taaatccttccaatgtgagcttgtgttcgccaagatgggaatcaaccccatcatgatgag 693 Query: 521 tgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggta 580 ||| ||||| |||| ||||| ||||| ||||||||||| ||| | |||||||| |||| Sbjct: 694 tgcgggagaattggaaagtggaaacgcaggagagccagcaaagttgatcaggcaaaggta 753 Query: 581 ccgtgaggctgcagacat 598 ||||||||| |||||||| Sbjct: 754 ccgtgaggcagcagacat 771
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 220 bits (111), Expect = 4e-54 Identities = 258/307 (84%) Strand = Plus / Plus Query: 313 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 372 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 373 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 432 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 433 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 492 | ||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || |||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttgtctttgcca 615 Query: 493 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 552 ||||||| ||||||||||||||||||||||| |||||| |||| ||||| || || |||| Sbjct: 616 agatgggaatcaaccccatcatgatgagtgctggagagttggaaagtggaaatgccggag 675 Query: 553 agccagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggta 612 ||||||| || | || |||||| | |||||||| || ||||| | ||||||||||| | Sbjct: 676 agccagcaaaattgattaggcagagataccgtgaagcctcagacttaatcaagaagggaa 735 Query: 613 agatgtg 619 ||||||| Sbjct: 736 agatgtg 742
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 210 bits (106), Expect = 4e-51 Identities = 249/294 (84%), Gaps = 2/294 (0%) Strand = Plus / Plus Query: 351 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 410 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 411 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 470 ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || ||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604 Query: 471 cagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagag 530 ||||| |||||||| || ||||||||| | |||| ||| |||||||||||||||||||| Sbjct: 605 cagtgcgagcttgtctttgccaagatgagaatcagccctatcatgatgagtgccggagaa 664 Query: 531 ctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtaccgtgaggct 590 |||| ||||| ||||| ||||| || || ||||| |||||||| |||||||||| || Sbjct: 665 ttggaaagtggaaacgcaggagaacccgcgaagctgatcaggcaaaggtaccgtgaagca 724 Query: 591 gcagacatgatcaagaagggtaagatgtgctgc-ctcttcatcaacgatcttga 643 || ||||| |||| ||||||||| ||||| ||| |||||||||||||||||||| Sbjct: 725 gccgacattatcaggaagggtaaaatgtg-tgcactcttcatcaacgatcttga 777 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 185 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 244 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 204 bits (103), Expect = 3e-49 Identities = 250/299 (83%) Strand = Plus / Plus Query: 342 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 401 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 402 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 461 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 462 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 521 ||||| ||||||||||||||||| ||| |||||||| |||||||| || ||||||||| Sbjct: 546 aaatctttccagtgtgagcttgtcttcagaaagatgggaatcaaccctattatgatgagt 605 Query: 522 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtac 581 |||||||| |||| ||||| || || |||||||| || || | || ||||| ||||| Sbjct: 606 gccggagaattggaaagtggaaatgcaggagagcctgcaaaattgattaggcaaaggtac 665 Query: 582 cgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacgatct 640 | ||||| ||||| || |||| ||| || || || || |||||||||||||||||||| Sbjct: 666 agagaggcagcagaaatcatcaggaaaggaaacatctgttgcctcttcatcaacgatct 724
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 202 bits (102), Expect = 1e-48 Identities = 252/302 (83%) Strand = Plus / Plus Query: 342 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 401 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 402 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 461 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 462 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 521 ||||||||||| ||||||||||| ||| |||||||| |||||||| || ||||||||| Sbjct: 593 aaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagt 652 Query: 522 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtac 581 || ||||| | || ||||| || || ||||||||||| || | |||||||| ||||| Sbjct: 653 gctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtac 712 Query: 582 cgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacgatctt 641 | ||||| || || || |||| |||||| || ||||| ||||||||||||||||||||| Sbjct: 713 agagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatctt 772 Query: 642 ga 643 || Sbjct: 773 ga 774
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 202 bits (102), Expect = 1e-48 Identities = 252/302 (83%) Strand = Plus / Plus Query: 339 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 398 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 399 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 458 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 459 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatg 518 || ||||||||||| ||||||||||| ||| |||||||| ||||||||||| |||||| Sbjct: 554 ggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatg 613 Query: 519 agtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcgg 578 ||||| ||||| |||| ||||| || || ||||||||||| || | || ||||| || Sbjct: 614 agtgctggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaagg 673 Query: 579 taccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatcaacgat 638 ||| | ||||| || || || |||| ||| || || ||||| || ||||||||||||||| Sbjct: 674 tacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgat 733 Query: 639 ct 640 || Sbjct: 734 ct 735
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 167 bits (84), Expect = 6e-38 Identities = 228/276 (82%) Strand = Plus / Plus Query: 344 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 403 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 404 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 463 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275 Query: 464 atcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 523 || ||||| ||||||||||| || || || |||| |||||||| || ||||||||||| Sbjct: 276 gtccttccaatgtgagcttgtatttgcaaaattgggaatcaacccaattatgatgagtgc 335 Query: 524 cggagagctggagagtgggaacgctggagagccagccaagctcatcaggcagcggtaccg 583 ||| || ||||||||||| | || |||||||| || || | ||||| |||| ||||| Sbjct: 336 cggtgaactggagagtggagatgcaggagagcccgcaaaattgatcagaaagcgataccg 395 Query: 584 tgaggctgcagacatgatcaagaagggtaagatgtg 619 ||| || || ||||| ||||||| || |||||||| Sbjct: 396 tgaagcggccgacattgtcaagaaaggaaagatgtg 431
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 163 bits (82), Expect = 9e-37 Identities = 169/194 (87%), Gaps = 3/194 (1%) Strand = Plus / Plus Query: 450 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 509 ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |||| || Sbjct: 1 aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60 Query: 510 atcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatc 569 |||||||||||||||||||| | || ||| |||||||| |||||||||| ||||||||| Sbjct: 61 atcatgatgagtgccggagaattagaaagt-ggaacgct-gagagccagctaagctcatc 118 Query: 570 aggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttc 629 || |||| |||||||||||| || || || |||||||||||||| ||||||||| | ||| Sbjct: 119 agacagc-gtaccgtgaggcagccgatatcatcaagaagggtaaaatgtgctgcttgttc 177 Query: 630 atcaacgatcttga 643 |||||||||||||| Sbjct: 178 atcaacgatcttga 191
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 131 bits (66), Expect = 3e-27 Identities = 117/134 (87%) Strand = Plus / Minus Query: 510 atcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatc 569 |||||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| Sbjct: 14555 atcatgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatc 14496 Query: 570 aggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttc 629 | ||| ||||||||||||| || ||| ||||||||||||| |||||||| || |||||| Sbjct: 14495 cgtcagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttc 14436 Query: 630 atcaacgatcttga 643 |||||||||||||| Sbjct: 14435 atcaacgatcttga 14422 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 423 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 482 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 483 gtgttcgccaagatgggcatcaa 505 || | ||||||||||| ||||| Sbjct: 14673 gtcatggccaagatgggtatcaa 14651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 345 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 404 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 405 ctgcccaacatcaag 419 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 131 bits (66), Expect = 3e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 510 atcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatc 569 |||||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| ||| Sbjct: 2728 atcatgatgagtgctggagagcttgagagtggaaacgcaggagaacccgcaaagcttatc 2787 Query: 570 aggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttc 629 | ||| ||||||||||||| || ||| ||||||||||||| |||||||| || |||||| Sbjct: 2788 cgtcagaggtaccgtgaggcagctgacttgatcaagaagggaaagatgtgttgtctcttc 2847 Query: 630 atcaacgatcttga 643 |||||||||||||| Sbjct: 2848 atcaacgatcttga 2861 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 423 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 482 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 483 gtgttcgccaagatgggcatcaa 505 || | ||||||||||| ||||| Sbjct: 2610 gtcatggccaagatgggtatcaa 2632 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 345 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 404 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 405 ctgcccaacatcaag 419 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 123 bits (62), Expect = 8e-25 Identities = 158/190 (83%) Strand = Plus / Plus Query: 451 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 510 |||| ||||||||||| ||||| ||||||||| || ||||||||||| |||||||||| Sbjct: 7 agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66 Query: 511 tcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatca 570 ||||||||||||| |||||||| || ||||| || || ||||||||||| || | |||| Sbjct: 67 tcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaattgatca 126 Query: 571 ggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttca 630 | ||| | |||||||| || | ||||| |||| ||| || |||||||| || || |||| Sbjct: 127 gacagagataccgtgaagcctctgacattatcaggaaaggaaagatgtgttgtctgttca 186 Query: 631 tcaacgatct 640 |||||||||| Sbjct: 187 tcaacgatct 196
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 107 bits (54), Expect = 5e-20 Identities = 117/138 (84%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 |||||||||||||||||||||||| ||||||| || ||||| |||||||| || ||| | Sbjct: 467 ccccatcatgatgagtgccggagaattggagagcggcaacgcaggagagcccgcgaagtt 526 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 |||||||| |||| |||||||| || ||||| ||||||||||| ||||||| ||||| Sbjct: 527 gatcaggcaacggtgtcgtgaggcggccgacatcatcaagaagggaaagatgtcttgcct 586 Query: 626 cttcatcaacgatcttga 643 || ||||| |||||||| Sbjct: 587 atttatcaatgatcttga 604 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 426 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 485 ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245 Query: 486 ttcgccaagatgggcatcaa 505 || ||||||||||| ||||| Sbjct: 246 tttgccaagatgggaatcaa 265 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 342 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 401 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 402 ac 403 || Sbjct: 66 ac 67
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 418 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 477 |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 478 agcttgtgttcgccaag 494 ||||||||||||||||| Sbjct: 2298 agcttgtgttcgccaag 2314 Score = 95.6 bits (48), Expect = 2e-16 Identities = 116/136 (85%), Gaps = 2/136 (1%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 |||||||||||||||||||||||| |||| ||||| || || ||||||||||| ||| | Sbjct: 2421 ccccatcatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaagtt 2480 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgc-c 624 |||||||| ||||||||||||| |||||| |||| |||||||||||||| ||| | Sbjct: 2481 gatcaggcaaaggtaccgtgaggcagcagacttgattgctaagggtaagatgtg-tgctc 2539 Query: 625 tcttcatcaacgatct 640 | |||||||||||||| Sbjct: 2540 tattcatcaacgatct 2555 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 341 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 400 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 401 gaccctgcccaacatcaag 419 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 101 bits (51), Expect = 3e-18 Identities = 201/251 (80%) Strand = Plus / Plus Query: 393 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 452 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 453 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 512 ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccctatt 641 Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||| || || | || |||||||| || ||||||||||| || | |||||| Sbjct: 642 atgatgagtgctggggaattagaaagtgggaatgcaggagagccagcaaaattgatcagg 701 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 || | ||| | ||||| || || || |||||||| || || ||||| || || || ||| Sbjct: 702 caaagatacagagaggcagctgatatcatcaagaaagggaaaatgtgttgtctatttatc 761 Query: 633 aacgatcttga 643 ||||||||||| Sbjct: 762 aacgatcttga 772
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 97.6 bits (49), Expect = 4e-17 Identities = 121/145 (83%) Strand = Plus / Plus Query: 496 tgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagc 555 ||||||||| ||||||| | ||| |||||| ||||||||| ||| ||||| || |||| Sbjct: 1443 tgggcatcagccccatcgtcatgtctgccggtgagctggagtctggtaacgccggtgagc 1502 Query: 556 cagccaagctcatcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaaga 615 | |||||||||||| | ||||| ||||| |||||| | |||| | |||||||| |||| Sbjct: 1503 ccgccaagctcatccgccagcgctaccgcgaggcttccgacagcgtgaagaagggcaaga 1562 Query: 616 tgtgctgcctcttcatcaacgatct 640 |||||| |||||||||||||||||| Sbjct: 1563 tgtgctccctcttcatcaacgatct 1587 Score = 65.9 bits (33), Expect = 2e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 339 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 398 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 399 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 458 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 459 ggaaa 463 ||||| Sbjct: 1248 ggaaa 1252
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 93.7 bits (47), Expect = 7e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 109 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 168 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| |||||| ||||||| |||||| Sbjct: 169 gatccgtcagcgctaccgtgaggccgcggacctgatctcgaagggcaagatgtcctgcct 228 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 229 gttcatcaacgatct 243
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 93.7 bits (47), Expect = 7e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 117 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 176 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| |||||| ||||||| |||||| Sbjct: 177 gatccgtcagcgctaccgtgaggcggcggacctgatctcgaagggcaagatgtcctgcct 236 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 237 gttcatcaacgatct 251
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 127 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 186 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 187 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 246 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 247 gttcatcaacgatct 261
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 123 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 182 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 183 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 242 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 243 gttcatcaacgatct 257
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 184 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 185 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 244 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 245 gttcatcaacgatct 259
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 184 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 185 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 244 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 245 gttcatcaacgatct 259
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 129 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 188 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 189 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 248 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 249 gttcatcaacgatct 263
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 123 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 182 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 183 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 242 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 243 gttcatcaacgatct 257
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 184 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 185 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 244 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 245 gttcatcaacgatct 259
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 123 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 182 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 183 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 242 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 243 gttcatcaacgatct 257
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 184 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 185 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 244 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 245 gttcatcaacgatct 259
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 184 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 185 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 244 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 245 gttcatcaacgatct 259
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 184 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 185 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 244 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 245 gttcatcaacgatct 259
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 127 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 186 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 187 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 246 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 247 gttcatcaacgatct 261
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 125 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 184 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 185 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 244 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 245 gttcatcaacgatct 259
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 506 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 565 ||||||| ||||||| ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct: 129 ccccatcgtgatgagcgccggcgagctagagagcggcaacgccggtgagccggcgaagct 188 Query: 566 catcaggcagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcct 625 ||| | ||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||| Sbjct: 189 gatccgtcagcgctaccgtgaggccgcggacctgatctccaagggcaagatgtcctgcct 248 Query: 626 cttcatcaacgatct 640 |||||||||||||| Sbjct: 249 gttcatcaacgatct 263
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 417 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 476 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 477 gagcttgtgttcgccaagatgggcatca 504 |||||||| || ||||||||||| |||| Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454 Score = 77.8 bits (39), Expect = 4e-11 Identities = 108/131 (82%) Strand = Plus / Minus Query: 513 atgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcagg 572 ||||||||||||||||| |||| ||||| || || |||||||| || ||| | || ||| Sbjct: 7262 atgatgagtgccggagaattggaaagtggaaatgcaggagagcctgcaaagttgattagg 7203 Query: 573 cagcggtaccgtgaggctgcagacatgatcaagaagggtaagatgtgctgcctcttcatc 632 || ||||||||||||| | ||||| |||| || || ||||||||||| ||||||||| Sbjct: 7202 caaaggtaccgtgaggcgtccgacattatcagaaaaggaaagatgtgctgtctcttcatc 7143 Query: 633 aacgatcttga 643 || |||||||| Sbjct: 7142 aatgatcttga 7132
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 435 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 494 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874 Query: 495 atgggcatcaa 505 ||||||||||| Sbjct: 104873 atgggcatcaa 104863 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Minus Query: 510 atcatgatgagtgccggagagctggagagtgggaacgctggagagccagc 559 |||||||||||||| |||||||| || ||||| || || ||||| ||||| Sbjct: 104183 atcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagc 104134
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 435 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 494 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899 Query: 495 atgggcatcaa 505 ||||||||||| Sbjct: 83898 atgggcatcaa 83888 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 324 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 379 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Minus Query: 510 atcatgatgagtgccggagagctggagagtgggaacgctggagagccagc 559 |||||||||||||| |||||||| || ||||| || || ||||| ||||| Sbjct: 83208 atcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagc 83159
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 388 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 447 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 448 gcaaggg 454 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 404 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 454 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 187 ccgacgaccagcaggacatcacc 209 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 229 actcgctcttccaggcgcccac 250 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 615 atgtgctgcctcttcatcaacgatct 640 ||||| |||||||||||||||||||| Sbjct: 55 atgtgttgcctcttcatcaacgatct 80
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 catggcagcggagaacatcg 138 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 atctccgacgaccagcaggacatc 206 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 gcagcggagaacatcgacga 142 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cccacgggcgacggcacccacgag 269 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcaagagctccaaggccaac 107 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ccctgcccaacatcaagatc 422 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 catggcagcggagaacatcg 138 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cccacgggcgacggcacccacgag 269 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 ttccagtgtgagcttgtgtt 487 |||||||||||||||||||| Sbjct: 97287 ttccagtgtgagcttgtgtt 97268
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 ggcttctacatcgctcctgctttc 362 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 cccacgggcgacggcacccacgag 269 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ccagagggaagggcatcgtg 227 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gtccatctctccaaaaactt 397 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcaagagctccaaggccaac 107 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ccagagggaagggcatcgtg 227 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ccctgcccaacatcaagatc 422 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cccacgggcgacggcacccacgag 269 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 caaggccaacaggttcacagtcat 121 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgatatctccgacgaccagc 198 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ccctgcccaacatcaagatc 422 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 (ENSANGG00000011813), partial mRNA Length = 1773 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 tcgccaagatgggcatcaac 506 |||||||||||||||||||| Sbjct: 641 tcgccaagatgggcatcaac 660
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 ggcttctacatcgctcctgctttc 362 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 caaggccaacaggttcacagtcat 121 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ccctgcccaacatcaagatc 422 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ccctgcccaacatcaagatc 422 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete sequence Length = 208153 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 tggagagtgggaacgctgga 551 |||||||||||||||||||| Sbjct: 90247 tggagagtgggaacgctgga 90228
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cccacgggcgacggcacccacgag 269 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,895,393 Number of Sequences: 3902068 Number of extensions: 4895393 Number of successful extensions: 85408 Number of sequences better than 10.0: 114 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84849 Number of HSP's gapped (non-prelim): 523 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
