>ACCD_ADICA (Q85FL3) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           beta (EC 6.4.1.2) (ACCase beta chain)
          Length = 310

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -2

Query: 307 NKLL*LSMPSNLLKGSLTTISSLYIS 230
           N LL L +P NLLKG L+ IS LY+S
Sbjct: 279 NGLLDLIVPRNLLKGVLSEISGLYLS 304

>RARB_COTJA (Q9W6B3) Retinoic acid receptor beta (RAR-beta)|
          Length = 455

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 202 PTS--STRSPASIYTEMILSSETLSINLRALTITKVYSGDCALLDGSSSKHYGL 357
           PTS  ST SPAS+ T+   S E +      L   +VY       D SS  HYG+
Sbjct: 49  PTSGCSTPSPASVETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGV 102

>TRUD_IDILO (Q5QUC5) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine|
           isomerase D) (tRNA pseudouridylate synthase D)
          Length = 350

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 202 PTSSTRSPASIYTEMILS---SETLSINLRALTITKVYSGDCALLDGSSS 342
           P   +RS  S+Y   + S   +E ++  +R   I    +GDC +L+GS S
Sbjct: 189 PPRISRSKRSLYLSALRSYLFNEIVAERIRQFGIEGTLTGDCVMLEGSQS 238

>MSHR_HORSE (P79166) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 317

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 285 IDNYKSLFWGLRFTGRIFFKALWVDIVSIW 374
           +D Y S+F+ LR+   +    +W  IV+IW
Sbjct: 140 VDRYISIFYALRYHSIMMLPRVWRAIVAIW 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,963,069
Number of Sequences: 219361
Number of extensions: 1561365
Number of successful extensions: 4747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4746
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)