ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal1k06 |
|---|---|
| Clone Library Name | barley_pub |
>Y112B_HAEIN (O86233) Hypothetical protein HI1126.1| Length = 371 Score = 35.0 bits (79), Expect = 0.14 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 13/103 (12%) Frame = +3 Query: 249 MLWIFYALVKTGEGLLITINAAGCVIETVYII-------MYLV-----YAPR-KAKIFTA 389 MLW F+ + L+I G +IE +++I Y V Y P K KI+ Sbjct: 6 MLWFFFCVTV----LIIGYFIYGKIIEKIFVINPKRQTPAYQVNDGVDYMPMSKTKIW-- 59 Query: 390 KIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVF 518 ++ LLNIAG G IF L A +G V++ WI +G C+F Sbjct: 60 -LIQLLNIAGTGPIFGPILGALYGP---VAMLWIVIG---CIF 95
>COX1_RICPR (O54069) Probable cytochrome c oxidase subunit 1 (EC 1.9.3.1)| (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) Length = 534 Score = 32.7 bits (73), Expect = 0.71 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Frame = +3 Query: 93 WXHPWAFTFGLLGNVISF---SSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWIF 263 W H FT GL N + + +++ +PT +IF +T S+ + + A+ +I Sbjct: 307 WAHHM-FTVGLSYNALIYFTAGTMIIAVPTGIKIFSWIATMWGGSITFPTPMLFAIGFII 365 Query: 264 YALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKIFTA 389 + G++++ +A V+ +T Y++ + Y +FTA Sbjct: 366 LFTIGGVTGIILSNSALDRVLHDTYYVVAHFHYTMSLGALFTA 408
>COX1_RICCN (Q92I67) Probable cytochrome c oxidase subunit 1 (EC 1.9.3.1)| (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) Length = 532 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Frame = +3 Query: 93 WXHPWAFTFGLLGNVISF---SSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWIF 263 W H FT GL N + + +++ +PT +IF +T S+ + + ++ +I Sbjct: 305 WAHHM-FTVGLSYNALIYFTAGTMIIAVPTGIKIFSWIATMWGGSITFPTPMLFSIGFII 363 Query: 264 YALVKTGEGLLITINAAGCVI-ETVYIIMYLVYAPRKAKIFTA 389 + G++++ +A V+ +T Y++ + Y +FTA Sbjct: 364 LFTIGGVTGIILSNSALDRVLHDTYYVVAHFHYTMSLGALFTA 406
>GALR3_RAT (O88626) Galanin receptor type 3 (GAL3-R) (GALR3)| Length = 370 Score = 30.0 bits (66), Expect = 4.6 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 25/164 (15%) Frame = +3 Query: 81 VAYPWXHPWAFTFGLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQ-------------SV 221 VA P F G++GN + + LL P P+ ++ +S +T+ F V Sbjct: 18 VAVPVIFALIFLLGMVGNGLVLAVLLQPGPSAWQEPRS-TTDLFILNLAVADLCFILCCV 76 Query: 222 PYVVALFSAMLWIFYALVKTGEGLLI--TINAAGCVIETVYIIMYL----------VYAP 365 P+ A+++ W+F A V LLI T+ A+ + V + YL + P Sbjct: 77 PFQAAIYTLDAWLFGAFVCKTVHLLIYLTMYASSFTLAAVSLDRYLAVRHPLRSRALRTP 136 Query: 366 RKAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICV 497 R A+ + LL +F +++G R +L +CV Sbjct: 137 RNARAAVGLVWLL------AALFSAPYLSYYGTVRYGALE-LCV 173
>YMP0_YEAST (Q03687) Hypothetical 46.9 kDa protein in PLB1-HXT2 intergenic| region Length = 405 Score = 30.0 bits (66), Expect = 4.6 Identities = 24/91 (26%), Positives = 39/91 (42%) Frame = +3 Query: 105 WAFTFGLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWIFYALVKTG 284 W + N+ISF+ L + T I K K+ GF L +++L I Y L+ Sbjct: 46 WLTMQFIANNLISFTPLFSYGTTIISIEKCKTALGFSIDICATMLIASILRISYYLITPY 105 Query: 285 EGLLITINAAGCVIETVYIIMYLVYAPRKAK 377 E L+ + I+ + + L Y P + K Sbjct: 106 EITLLRQSLVMIFIQLILLRTSLKYRPDEYK 136
>QACH_STASA (O87868) Quaternary ammonium compound-resistance protein qacH| (Quarternary ammonium determinant H) Length = 107 Score = 29.6 bits (65), Expect = 6.0 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Frame = +3 Query: 195 KSTEGFQSVPYVVALFSAMLWIFYALVKTGEGLLITINAA-----GCVIETVYIIMYLVY 359 KS++GF + + + L FY L KT + L + I A G V+ T I+ L++ Sbjct: 21 KSSDGFSKLYPTITTIISFLICFYFLSKTMQHLPLNITYASWAGLGLVLTT--IVSVLIF 78 Query: 360 APRKAKIFTAKIVLLLNIAGFGLIFVLTLFAFH 458 + I I+L++ FG++ + T + H Sbjct: 79 KEQINLISIISIILII----FGVVLLNTFGSSH 107
>Y225_MYCGE (P47467) Hypothetical protein MG225| Length = 489 Score = 29.6 bits (65), Expect = 6.0 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 19/100 (19%) Frame = +3 Query: 120 GLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWI---------FYAL 272 G+ GN+++ L+A +FY + ST+G ++ALF+++ WI Y + Sbjct: 122 GIRGNLVNTWILIAIGFSFYVLLAFISTKGTSLNKKLIALFASVKWIVILSALIVAIYVI 181 Query: 273 VKTGEGLLITINAAG----------CVIETVYIIMYLVYA 362 + G G N I TV+I + YA Sbjct: 182 ARDGNGYSQNNNLESGFFGRREISFAQIATVFITFFYSYA 221
>ADSL4_ARATH (Q9LMI4) Putative delta-9 desaturase-like 4 protein (EC 1.14.19.-)| Length = 319 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = +3 Query: 51 SHCYISL*QWVAYPWXHPWAFTFGLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQSVPYV 230 SH + +W+ YPW ++ F L G+ + + S I F+ F + P Sbjct: 101 SHRSFKIPKWLEYPWA--YSAVFALQGDPMDWVS----IHRFHHQFTDSDRDPHS--PKE 152 Query: 231 VALFSAMLWIF 263 LFS +LWIF Sbjct: 153 GLLFSHILWIF 163
>C4BP_BOVIN (Q28065) C4b-binding protein alpha chain precursor (C4bp)| Length = 610 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 14/56 (25%) Frame = +1 Query: 55 TVIYLCNNGWPIHGSTLGHSP--------------SAC*ATSSLSRASWPRYQHST 180 +++Y CN G+ + G +L H + C + A W RY H T Sbjct: 262 SIVYACNKGFRLEGDSLIHCEADNSWNPPPPTCELNGCLGLPHIPHALWERYDHQT 317
>ARCD_LACSK (O53092) Arginine/ornithine antiporter| Length = 475 Score = 29.3 bits (64), Expect = 7.9 Identities = 20/89 (22%), Positives = 41/89 (46%) Frame = +3 Query: 93 WXHPWAFTFGLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQSVPYVVALFSAMLWIFYAL 272 W W LGNV + L++ + F+ IFKS+ Q++P ++ + S + W Sbjct: 96 WLSAW------LGNVTFATILMSALGYFFPIFKSR-----QNLPSIL-VASVLSWSLTYF 143 Query: 273 VKTGEGLLITINAAGCVIETVYIIMYLVY 359 V G IN + + + + +++++ Sbjct: 144 VNRGVEGAAAINTLVTICKLIPLFVFIIF 172
>DAPA_SYMTH (Q67P59) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 293 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +2 Query: 158 GPDTNILPDLQEQIHGGVPVGALCRGPIQRDAVDLLRAGQDRR 286 G D N+LP L +G + V + GP R+ +D AG R Sbjct: 188 GDDANLLPYLTVGAYGIISVASHVVGPQMRELIDAFLAGDTAR 230
>PDXT_CLOAB (Q97LG6) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)| (Glutamine amidotransferase glutaminase subunit pdxT) Length = 186 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +2 Query: 167 TNILPDLQEQIHGGVPVGALCRGPI 241 +N+L L+E+I+GG+PV C G I Sbjct: 58 SNMLQPLREKIYGGMPVWGTCAGMI 82
>GALR3_MOUSE (O88853) Galanin receptor type 3 (GAL3-R) (GALR3)| Length = 370 Score = 29.3 bits (64), Expect = 7.9 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 25/164 (15%) Frame = +3 Query: 81 VAYPWXHPWAFTFGLLGNVISFSSLLAPIPTFYRIFKSKSTEGFQ-------------SV 221 VA P F G++GN + + LL P P+ ++ +T+ F V Sbjct: 18 VAVPVVFALIFLLGMVGNGLVLAVLLQPGPSAWQE-PGSTTDLFILNLAVADLCFILCCV 76 Query: 222 PYVVALFSAMLWIFYALVKTGEGLLI--TINAAGCVIETVYIIMYL----------VYAP 365 P+ A+++ W+F A V LLI T+ A+ + V + YL + P Sbjct: 77 PFQAAIYTLDAWLFGAFVCKTVHLLIYLTMYASSFTLAAVSVDRYLAVRHPLRSRALRTP 136 Query: 366 RKAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICV 497 R A+ + LL +F +++G R +L +CV Sbjct: 137 RNARAAVGLVWLL------AALFSAPYLSYYGTVRYGALE-LCV 173
>PUS3_YEAST (P31115) tRNA pseudouridine synthase 3 (EC 5.4.99.-) (tRNA-uridine| isomerase 3) (tRNA pseudouridylate synthase 3) (Depressed growth-rate protein DEG1) Length = 442 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -3 Query: 553 LITRPMMLRGATKTHTEKPTQIQPSETTRVSPWKAKRVRTKMSPK 419 LI R L A K H+EK I+ ++ ++S + R + K +PK Sbjct: 38 LIRRITELENANKPHSEKFQHIEDNKKRKISQEEVTRSKAKKAPK 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,381,640 Number of Sequences: 219361 Number of extensions: 1286112 Number of successful extensions: 4368 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4241 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4367 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
