Clone Information

BLAST Search Result

Clone Name	baal1k01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing pr...	64	2e-10
2	SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing prot...	62	9e-10
3	SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing pr...	62	9e-10
4	SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing pr...	62	1e-09
5	SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing pr...	53	7e-07
6	TDRD1_MOUSE (Q99MV1) Tudor domain-containing protein 1	39	0.014
7	DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (...	39	0.014
8	DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC...	34	0.27
9	DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (...	34	0.27
10	DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (...	34	0.27
11	DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (...	34	0.27
12	TDRD1_HUMAN (Q9BXT4) Tudor domain-containing protein 1	33	0.46
13	TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon ca...	33	0.60
14	TDRD7_HUMAN (Q8NHU6) Tudor domain-containing protein 7 (Tudor re...	33	0.60
15	STK31_MOUSE (Q99MW1) Serine/threonine-protein kinase 31 (EC 2.7....	32	1.8
16	NUC_STAAU (P00644) Thermonuclease precursor (EC 3.1.31.1) (TNase...	32	1.8
17	Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (...	31	2.3
18	CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (E...	31	3.0
19	EGFL8_MOUSE (Q6GUQ1) EGF-like domain-containing protein 8 precur...	30	3.9
20	TUD_DROME (P25823) Maternal protein tudor	30	3.9
21	Y1078_PYRAB (Q9UZR7) Hypothetical RNA methyltransferase PYRAB107...	30	3.9
22	SBDS_HUMAN (Q9Y3A5) Shwachman-Bodian-Diamond syndrome protein	30	3.9
23	SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-b...	30	3.9
24	NUC_STAAW (Q8NXI6) Thermonuclease precursor (EC 3.1.31.1) (TNase...	30	5.1
25	NUC_STAAS (Q6GB41) Thermonuclease precursor (EC 3.1.31.1) (TNase...	30	5.1
26	NUC_STAAR (Q6GIK1) Thermonuclease precursor (EC 3.1.31.1) (TNase...	30	5.1
27	NUC_STAAN (Q7A6P2) Thermonuclease precursor (EC 3.1.31.1) (TNase...	30	5.1
28	NUC_STAAM (Q99VJ0) Thermonuclease precursor (EC 3.1.31.1) (TNase...	30	5.1
29	NUC_STAAC (Q5HHM4) Thermonuclease precursor (EC 3.1.31.1) (TNase...	30	5.1
30	APC_HUMAN (P25054) Adenomatous polyposis coli protein (Protein APC)	30	5.1
31	TDRD7_MOUSE (Q8K1H1) Tudor domain-containing protein 7 (Tudor re...	30	5.1
32	TDRD5_HUMAN (Q8NAT2) Tudor domain-containing protein 5	30	5.1
33	ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)	30	5.1
34	SBDS_MOUSE (P70122) Shwachman-Bodian-Diamond syndrome protein ho...	30	6.7
35	KLF7_MOUSE (Q99JB0) Krueppel-like factor 7	30	6.7
36	KLF7_HUMAN (O75840) Krueppel-like factor 7 (Ubiquitous krueppel-...	30	6.7
37	TDRD7_RAT (Q9R1R4) Tudor domain-containing protein 7 (Tudor repe...	30	6.7
38	TDRD6_MOUSE (P61407) Tudor domain-containing protein 6	30	6.7
39	KLF6_RAT (O35819) Krueppel-like factor 6 (Core promoter element-...	29	8.7
40	KLF6_MOUSE (O08584) Krueppel-like factor 6 (Core promoter elemen...	29	8.7
41	KLF6_HUMAN (Q99612) Krueppel-like factor 6 (Core promoter elemen...	29	8.7
42	PHLB3_HUMAN (Q6NSJ2) Pleckstrin homology-like domain family B me...	29	8.7

>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator) (EBNA2 coactivator
            p100)
          Length = 910

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 10/179 (5%)
 Frame = +1

Query: 73   VESVDD--KFEVFYIDFGNQEVVPYNRIRPADPSVSSS--PPLAQLCSLAFIKVPGLEDD 240
            VE V+   K  VFYID+GN+EV+P  R+    P+ S+   P  A   + AFI+VP  +DD
Sbjct: 750  VEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVP-QDDD 808

Query: 241  NGQEAAEYL------SECLLSSSKQYRAMIEERDXXXXXXXXXXXXPVLIVTLVDPETES 402
               +A + +      ++CLL+        +E                   VTL   +++ 
Sbjct: 809  ARTDAVDSVVRDIQNTQCLLN--------VEHLSAGCPH-----------VTLQFADSKG 849

Query: 403  SINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDEEEQ 579
             +   +++EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D+ ++
Sbjct: 850  DVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADE 905

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>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator) (SND p102) (p105
            coactivator)
          Length = 909

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
 Frame = +1

Query: 73   VESVDD--KFEVFYIDFGNQEVVPYNRIRPADPSVSSS--PPLAQLCSLAFIKVPGLEDD 240
            VE V+   K  VFYID+GN+E++P  R+    P+ S+   P  A   + AFI+VP  ED 
Sbjct: 749  VEKVESPAKVHVFYIDYGNREILPSTRLGALPPAFSTRVLPAQATEYAFAFIQVPQDEDA 808

Query: 241  NGQEAAEYL-----SECLLSSSKQYRAMIEERDXXXXXXXXXXXXPVLIVTLVDPETESS 405
                    +     ++CLL+        +E                   VTL   +++  
Sbjct: 809  RTDAVDSVVRDIQNTQCLLN--------VEHLSASCPH-----------VTLQFADSKGD 849

Query: 406  INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDEEEQ 579
            +   +++EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D+ ++
Sbjct: 850  VGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADE 904

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>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator)
          Length = 910

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
 Frame = +1

Query: 73   VESVDD--KFEVFYIDFGNQEVVPYNRIRPADPSVSSS--PPLAQLCSLAFIKVPGLEDD 240
            VE V+   K  VFYID+GN+E++P  R+    P+ S+   P  A   + AFI+VP  ED 
Sbjct: 750  VEKVESPAKVHVFYIDYGNREILPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQDEDA 809

Query: 241  NGQEAAEYL-----SECLLSSSKQYRAMIEERDXXXXXXXXXXXXPVLIVTLVDPETESS 405
                    +     ++CLL+        +E                   VTL   +++  
Sbjct: 810  RTDAVDSVVRDIQNTQCLLN--------VEHLSASCPH-----------VTLQFADSKGD 850

Query: 406  INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDEEEQ 579
            +   +++EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D+ ++
Sbjct: 851  VGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADE 905

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>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator)
          Length = 910

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
 Frame = +1

Query: 73   VESVDD--KFEVFYIDFGNQEVVPYNRIRPADPSVSSS--PPLAQLCSLAFIKVPGLEDD 240
            VE V+   K  VFYID+GN+E++P  R+    P+ S+   P  A   + AFI+VP  ED 
Sbjct: 750  VEKVESPAKVHVFYIDYGNREILPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQDEDA 809

Query: 241  NGQEAAEYL-----SECLLSSSKQYRAMIEERDXXXXXXXXXXXXPVLIVTLVDPETESS 405
                    +     ++CLL+        +E                   VTL   +++  
Sbjct: 810  RTDAVDSVVRDIQNTQCLLN--------VEHLSAGCPH-----------VTLQFADSKGD 850

Query: 406  INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDEEEQ 579
            +   +++EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D+ ++
Sbjct: 851  VGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADE 905

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>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator) (4SNc-Tudor domain
            protein)
          Length = 897

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
 Frame = +1

Query: 73   VESVDD--KFEVFYIDFGNQEVVPYNRIRPADPSVSSS--PPLAQLCSLAFIKVPGLEDD 240
            VE V+   K  VFYID+GN+EV+   R+    P+ S+   PP A   + A+I+VP  ED 
Sbjct: 753  VEKVESPAKVHVFYIDYGNREVLSSTRLAALPPAFSTRTLPPQATEYAFAYIQVPQDEDA 812

Query: 241  NGQEAAEYL-----SECLLSSSKQYRAMIEERDXXXXXXXXXXXXPVLIVTLVDPETESS 405
                    +     ++CLL  + +Y  M+  +                 VTL   +T+  
Sbjct: 813  RADAVDSVVRDIHNTQCLL--NVEYSGMVCPQ-----------------VTLQFADTKED 853

Query: 406  INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQ 546
            +   +++EG+  ++  K    ++  T   N    QE AK  RL +W+
Sbjct: 854  VGLGLVKEGMVMVDIRKEKYLQKMVTEYLNA---QESAKSARLNIWR 897

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>TDRD1_MOUSE (Q99MV1) Tudor domain-containing protein 1|
          Length = 928

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 70  AVESVDDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLA 210
           AV+ +  K  V YID+GN+E++P + + P    +   PP A  C ++
Sbjct: 87  AVDVLQRKAHVLYIDYGNEEMIPIDSVHPLSRGLDLFPPSAIKCCVS 133



 Score = 33.9 bits (76), Expect = 0.35
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 55  WXPXXAVESVDDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSL 207
           W     +E+ +   +V Y D+GN E +P +R++P   S    P     CSL
Sbjct: 755 WYRAIVLETSESDVKVLYADYGNIETLPLSRVQPIPASHLELPFQIIRCSL 805



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 100 VFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLAFIK 219
           V Y+D+GN E++   R+ P  P +   P  A  C LA +K
Sbjct: 325 VGYVDYGNFEILSLKRLCPIIPKLLDLPMQALNCVLAGVK 364

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>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1018

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 21/64 (32%), Positives = 36/64 (56%)
 Frame = +1

Query: 388 PETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 567
           PE +      + EE   R ER ++W  ++RKTA+EN+ +   K + E ++  +   +E D
Sbjct: 114 PEDQDFDQNTLEEEMRKRKERVEKWREEQRKTAMENIGEI--KKELEEMKQGKKWSLEDD 171

Query: 568 EEEQ 579
           +EEQ
Sbjct: 172 DEEQ 175

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>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (Helicase of 117.4 kDa)
          Length = 1032

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +1

Query: 424 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESDEEEQA 582
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + DE++ A
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPA 211

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>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +1

Query: 424 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESDEEEQA 582
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + DE++ A
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPA 211

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>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +1

Query: 424 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESDEEEQA 582
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + DE++ A
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPA 211

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>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (PRP5 homolog)
          Length = 1032

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +1

Query: 424 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESDEEEQA 582
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + DE++ A
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPA 211

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>TDRD1_HUMAN (Q9BXT4) Tudor domain-containing protein 1|
          Length = 777

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +1

Query: 55  WXPXXAVESVDDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLAFIKVPGLE 234
           W     + + D   EV Y D+GN E +P  R++P   S  + P     CSL      GL 
Sbjct: 604 WYRAVVLGTSDTDVEVLYADYGNIETLPLCRVQPITSSHLALPFQIIRCSL-----EGLM 658

Query: 235 DDNGQEA 255
           + NG  +
Sbjct: 659 ELNGSSS 665



 Score = 30.4 bits (67), Expect = 3.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 100 VFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLAFIK 219
           V Y+D+GN E++   R+ P  P +   P  A  C LA +K
Sbjct: 171 VGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVK 210

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>TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon cancer antigen|
           NY-CO-45) (Fragment)
          Length = 753

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +1

Query: 85  DDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLAFIKVPGLEDDNGQEAAEY 264
           +D   V +ID+GN  VV  N+I   D   +  P L   CSL   +VP  ++ N ++   Y
Sbjct: 110 NDLLSVQFIDYGNVSVVHTNKIGRLDLVNAILPGLCIHCSLQGFEVP--DNKNSKKMMHY 167

Query: 265 LSE 273
            S+
Sbjct: 168 FSQ 170

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>TDRD7_HUMAN (Q8NHU6) Tudor domain-containing protein 7 (Tudor repeat associator|
           with PCTAIRE 2) (Trap)
          Length = 1098

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 22  QFLXIXAMXC*WXPXXAVESVDDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLC 201
           Q L + A    W     + + ++K +V Y+D+G  E V  ++    +P   S    A  C
Sbjct: 518 QLLAVNAEEDAWLRAQVISTEENKIKVCYVDYGFSENVEKSKAYKLNPKFCSLSFQATKC 577

Query: 202 SLAFIKVPGLEDD 240
            LA ++V  L DD
Sbjct: 578 KLAGLEV--LSDD 588

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>STK31_MOUSE (Q99MW1) Serine/threonine-protein kinase 31 (EC 2.7.11.1)|
          Length = 1018

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 85  DDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLA-FIKVPGLEDDNGQEAAE 261
           DDK  V YID+GN E++  NR       +   PP  Q  S+A   ++ GL+  +GQE  +
Sbjct: 106 DDKCLVRYIDYGNTEIL--NR-----SDIVEIPPELQFSSIAKKYRLWGLQIPSGQEVTQ 158

Query: 262 Y 264
           +
Sbjct: 159 F 159

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>NUC_STAAU (P00644) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
           [Contains: Nuclease B; Nuclease A]
          Length = 231

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDE 570
           +N A++ +GLA++     +  K   T  ++L + + +AKKE+L +W   + +S +
Sbjct: 181 VNEALVRQGLAKVA----YVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADSGQ 231

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>Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (EC 2.1.1.-)|
          Length = 407

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRW---DTKE----RKTALENLEQFQEKAKKERLRLWQYGDVES 564
           I+ A+  EG+   ERGK W   D +E     KT+ + +E+ +E  ++ER+ +W   +V+ 
Sbjct: 111 IDLAVTVEGIGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVW---NVKK 167

Query: 565 DE 570
           DE
Sbjct: 168 DE 169

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>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Centromere/microtubule-binding protein CBF5)
           (Centromere-binding factor 5) (Small nucleolar RNP
           protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
          Length = 483

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/54 (27%), Positives = 33/54 (61%)
 Frame = +1

Query: 421 LEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDEEEQA 582
           ++E  ++ E+ ++ D KE+K   E  ++ ++K KKE+ R  + GD E  + +++
Sbjct: 428 VKEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSEEKKSKKS 481

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>EGFL8_MOUSE (Q6GUQ1) EGF-like domain-containing protein 8 precursor (Epidermal|
           growth factor-like protein 8) (Multiple EGF-like domain
           protein 8)
          Length = 293

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 394 TESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKA 519
           T +SI +  + E  +  ER  RW+  E +  LE LEQ+ ++A
Sbjct: 192 TSASILSVAVREADSEEERALRWEVAELRGRLEKLEQWAKQA 233

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>TUD_DROME (P25823) Maternal protein tudor|
          Length = 2515

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 94   FEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLAFIKVP-GLEDDNGQEAAEYLS 270
            FEVF +D+GN  VVP   +      +   P LA  C L+  K+P  + D+  +EA   L 
Sbjct: 2241 FEVFLLDYGNTLVVP--EVWQLPQEIEPIPSLALHCQLS--KIPMDVSDEKLEEAFAALL 2296

Query: 271  E 273
            E
Sbjct: 2297 E 2297



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 76   ESVDDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSL 207
            E  D ++EV +ID+GN      ++       ++S P L++ CSL
Sbjct: 1864 ELPDSRYEVLFIDYGNTSTT--SKCLMLSEEIASLPSLSKKCSL 1905



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 94   FEVFYIDFGNQEVVPYNRIRPAD 162
            FEVFYID+GN E +  + I+  D
Sbjct: 1386 FEVFYIDYGNTEEIKRDDIKALD 1408

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>Y1078_PYRAB (Q9UZR7) Hypothetical RNA methyltransferase PYRAB10780 (EC 2.1.1.-)|
          Length = 405

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRWDTKE-------RKTALENLEQFQEKAKKERLRLWQYGDVES 564
           I+ A+ ++G+   ERGK W   +        KT+ E +E+ +E  ++E++ +W   +++ 
Sbjct: 111 IDLAITKDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVW---NIKK 167

Query: 565 DE 570
           DE
Sbjct: 168 DE 169

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>SBDS_HUMAN (Q9Y3A5) Shwachman-Bodian-Diamond syndrome protein|
          Length = 249

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 382 VDPETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 540
           V+PET+      ++E  +  +    + +   ++ ALE ++Q +EK K ER  +
Sbjct: 119 VNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHM 171

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>SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-box protein|
           SMC2)
          Length = 1170

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 397 ESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYG 552
           +SS+   +L++ L  +E   +  TK+ +  +++++Q QE   K R RL +YG
Sbjct: 419 KSSMKMELLKKELLTIEPKLKEATKDNELNVKHVKQCQETCDKLRARLVEYG 470

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>NUC_STAAW (Q8NXI6) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDE 570
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S +
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ 228

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>NUC_STAAS (Q6GB41) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDE 570
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S +
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ 228

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>NUC_STAAR (Q6GIK1) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDE 570
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S +
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ 228

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>NUC_STAAN (Q7A6P2) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDE 570
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S +
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ 228

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>NUC_STAAM (Q99VJ0) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDE 570
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S +
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ 228

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>NUC_STAAC (Q5HHM4) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 406 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESDE 570
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S +
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ 228

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>APC_HUMAN (P25054) Adenomatous polyposis coli protein (Protein APC)|
          Length = 2843

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +1

Query: 76   ESVDDKFEVFYIDFGNQEVVPYNRIRPADPS----VSSSPPLAQLCSLAFIKVPGLEDDN 243
            ES DDK   F   FG QE V   R R A+ S    V S+  + Q  S +  +    EDD 
Sbjct: 1080 ESTDDKHLKFQPHFGQQECVSPYRSRGANGSETNRVGSNHGINQNVSQSLCQEDDYEDDK 1139

Query: 244  GQEAAEYLSE 273
                +E  SE
Sbjct: 1140 PTNYSERYSE 1149

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>TDRD7_MOUSE (Q8K1H1) Tudor domain-containing protein 7 (Tudor repeat associator|
           with PCTAIRE 2) (Trap)
          Length = 1086

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +1

Query: 22  QFLXIXAMXC*WXPXXAVESVDDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLC 201
           Q L + A    W     + + ++K +V Y+D+G  E +  ++    +P   S    A  C
Sbjct: 506 QLLAVNAEEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKC 565

Query: 202 SLAFIKVPGLEDD 240
            LA ++V  L DD
Sbjct: 566 KLAGLEV--LNDD 576

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>TDRD5_HUMAN (Q8NAT2) Tudor domain-containing protein 5|
          Length = 682

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 97  EVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLAFIK 219
           EVFY DFGN  +V  + +R      +  P  A  CSLA+++
Sbjct: 204 EVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVR 244

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>ADSV_MOUSE (Q60604) Adseverin (Scinderin) (Gelsolin-like protein)|
          Length = 715

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = +1

Query: 373 VTLVDPETESSINAAMLEE------GLAR---LERGKRWDTKERKTALENLEQFQEKAK 522
           VTLV  E   S+   + EE      G A+   + +GK  + +ERKTA++  E+F +K K
Sbjct: 263 VTLVAEENPFSMGMLLSEECFILDHGAAKQIFVWKGKNANPQERKTAMKTAEEFLQKMK 321

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>SBDS_MOUSE (P70122) Shwachman-Bodian-Diamond syndrome protein homolog (Protein|
           22A3)
          Length = 249

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 382 VDPETESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRL 540
           V+PET+      ++E  +  +    + +   ++ ALE ++Q +EK K ER  +
Sbjct: 119 VNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHM 171

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>KLF7_MOUSE (Q99JB0) Krueppel-like factor 7|
          Length = 301

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 392
           +D    HYR K  G++ + C+HCD C SR
Sbjct: 262 SDELTRHYR-KHTGAKPFKCNHCDRCFSR 289

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>KLF7_HUMAN (O75840) Krueppel-like factor 7 (Ubiquitous krueppel-like factor)|
          Length = 302

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 392
           +D    HYR K  G++ + C+HCD C SR
Sbjct: 263 SDELTRHYR-KHTGAKPFKCNHCDRCFSR 290

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>TDRD7_RAT (Q9R1R4) Tudor domain-containing protein 7 (Tudor repeat associator|
           with PCTAIRE 2) (Trap)
          Length = 1113

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 22  QFLXIXAMXC*WXPXXAVESVDDKFEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLC 201
           Q L + A    W     + + ++K +V Y+D+G  E +  ++    +P   S    A  C
Sbjct: 533 QLLAVNAEEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKC 592

Query: 202 SLAFIKVPGLEDD 240
            LA +++  L DD
Sbjct: 593 KLAGLEI--LNDD 603

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>TDRD6_MOUSE (P61407) Tudor domain-containing protein 6|
          Length = 2134

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 100  VFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLAFIKVP 225
            V +ID+GN  VV  NR     P  +  P L   CSL  + VP
Sbjct: 1391 VQFIDYGNMSVVHTNRTGRLGPVDAVLPALCLHCSLWGLSVP 1432



 Score = 29.3 bits (64), Expect = 8.7
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 73  VESVDDK-FEVFYIDFGNQEVVPYNRIRPADPSVSSSPPLAQLCSLAFIKVPGLEDDNGQ 249
           V  +D K  +VF +D GN E V +  +R   P     P LA  C+LA I   G      Q
Sbjct: 563 VTRLDSKSVDVFLVDRGNSENVDWCDVRMLLPQFRQLPILALKCTLADIWPLG--KTWSQ 620

Query: 250 EAAEYLSECLL 282
           EA  +  + +L
Sbjct: 621 EATSFFKKTVL 631

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>KLF6_RAT (O35819) Krueppel-like factor 6 (Core promoter element-binding|
           protein) (Transcription factor Zf9)
          Length = 283

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 392
           +D    H+R K  G++ + CSHCD C SR
Sbjct: 244 SDELTRHFR-KHTGAKPFKCSHCDRCFSR 271

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>KLF6_MOUSE (O08584) Krueppel-like factor 6 (Core promoter element-binding|
           protein)
          Length = 283

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 392
           +D    H+R K  G++ + CSHCD C SR
Sbjct: 244 SDELTRHFR-KHTGAKPFKCSHCDRCFSR 271

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>KLF6_HUMAN (Q99612) Krueppel-like factor 6 (Core promoter element-binding|
           protein) (B-cell-derived protein 1) (Proto-oncogene
           BCD1) (Transcription factor Zf9) (GC-rich sites-binding
           factor GBF)
          Length = 283

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 NDRRA*HYRWKSEGSRHWTCSHCDSC*SR 392
           +D    H+R K  G++ + CSHCD C SR
Sbjct: 244 SDELTRHFR-KHTGAKPFKCSHCDRCFSR 271

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>PHLB3_HUMAN (Q6NSJ2) Pleckstrin homology-like domain family B member 3|
          Length = 279

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
 Frame = +1

Query: 157 ADPSVSSSPPLAQLCSLAFIKVPGLEDDNGQEAAEYLSECLLSSSKQYRAMIE---ERDX 327
           + P   + PPL   C +        E+   QEA+E L+E       + +A  E   E   
Sbjct: 5   SSPEEGTPPPLVPECDVEVQPQGHPEESREQEASEVLAEPSSRGGAEQQAEEEEVGEGSS 64

Query: 328 XXXXXXXXXXXPVLIVTLVDPETESSINAAMLEEGLARLERGKRWDTKERKTALE-NLEQ 504
                      P + +    P + SS        G AR  +G++ +   R   +E  +++
Sbjct: 65  TESSRDAPEATPPIAMAATPPASTSSREGV---RGAARRLQGQQLEALTRVALMEQRVKE 121

Query: 505 FQEKAKKERLRL 540
            Q + K+ R+ +
Sbjct: 122 LQRQRKELRIEM 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,144,781
Number of Sequences: 219361
Number of extensions: 1228800
Number of successful extensions: 4227
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 4019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4210
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result