>RER1A_ARATH (O48670) RER1A protein (AtRER1A)|
          Length = 191

 Score = 90.1 bits (222), Expect(2) = 5e-20
 Identities = 38/42 (90%), Positives = 41/42 (97%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 170
           TFFSVFDVPVFWPILLCYWIVLFVLTM+RQI HM+KYKY+PF
Sbjct: 132 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPF 173



 Score = 26.9 bits (58), Expect(2) = 5e-20
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 2   WYAITXXFCVAFVM 43
           WY++T  FC+AF+M
Sbjct: 118 WYSMTKAFCIAFLM 131

>RER1B_ARATH (O48671) RER1B protein (AtRER1B)|
          Length = 195

 Score = 87.8 bits (216), Expect(2) = 2e-19
 Identities = 36/42 (85%), Positives = 41/42 (97%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 170
           TFFSVFDVPVFWPILLCYW+VLFVLTM+RQI HM+K+KY+PF
Sbjct: 131 TFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPF 172



 Score = 26.9 bits (58), Expect(2) = 2e-19
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 2   WYAITXXFCVAFVM 43
           WY++T  FC+AF+M
Sbjct: 117 WYSMTKAFCIAFLM 130

>RER1C_ARATH (Q9ZWI7) RER1C protein (AtRER1C)|
          Length = 212

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 170
           TFF VFDVPVFWPILL YW++LF LTM++QI HM+KY+YVPF
Sbjct: 153 TFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPF 194

>RER1_MOUSE (Q9CQU3) RER1 protein|
          Length = 196

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 170
           TFF  F+VPVFWPIL+ Y+I+LF +TMKRQI HM+KY+Y+PF
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177

>RER1_HUMAN (O15258) RER1 protein|
          Length = 196

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 170
           TFF  F+VPVFWPIL+ Y+I+LF +TMKRQI HM+KY+Y+PF
Sbjct: 136 TFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177

>YAF8_CAEEL (P52879) Hypothetical protein F46C5.8 in chromosome II|
          Length = 191

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 28/42 (66%), Positives = 36/42 (85%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 170
           TFF  FDVPVFWPIL+ Y+ +L  LT+KRQI+HM+KY+Y+PF
Sbjct: 131 TFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPF 172

>RER1_YEAST (P25560) Protein RER1 (Retention of ER proteins 1)|
          Length = 188

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 28/41 (68%), Positives = 37/41 (90%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVP 167
           + FS+FD+PVFWPILL Y+I+LF LTM+RQI HM+KY+Y+P
Sbjct: 135 SLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIP 175

>RER1_SACPS (P79003) Protein RER1 (Retention of ER proteins 1)|
          Length = 188

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 27/41 (65%), Positives = 37/41 (90%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVP 167
           + FS+FD+PVFWPILL Y+++LF LTM+RQI HM+KY+Y+P
Sbjct: 135 SLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIP 175

>RER1_SCHPO (Q10358) Protein rer1 (Retention of ER proteins 1)|
          Length = 184

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 26/42 (61%), Positives = 34/42 (80%)
 Frame = +3

Query: 45  TFFSVFDVPVFWPILLCYWIVLFVLTMKRQILHMVKYKYVPF 170
           +FF +FDVPVFWPIL+ Y++VL     +RQI HM+KY+YVPF
Sbjct: 133 SFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPF 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,925,212
Number of Sequences: 219361
Number of extensions: 1446894
Number of successful extensions: 3591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3591
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)