ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal1j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COMP_RAT (P35444) Cartilage oligomeric matrix protein precursor ... 30 3.3
2DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re... 30 3.3
3COMP_MOUSE (Q9R0G6) Cartilage oligomeric matrix protein precurso... 30 5.6
4SDK2_CHICK (Q8AV57) Protein sidekick-2 precursor 29 7.3

>COMP_RAT (P35444) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 755

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 43  PASQPGXTLSPPSPCYPGSKIPGVV 117
           PA  PG ++ P + C PGS  PGVV
Sbjct: 75  PARTPGLSVRPVALCAPGSCFPGVV 99



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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 28  VGVRFPASQPGXTLSPPSPCYPGS-KIP 108
           VG+  P+S PG T  PP P  PGS +IP
Sbjct: 640 VGIPSPSSLPGGTAIPPPPPLPGSARIP 667



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>COMP_MOUSE (Q9R0G6) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 755

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 43  PASQPGXTLSPPSPCYPGSKIPGVV 117
           PA  PG ++ P   C PGS  PGVV
Sbjct: 75  PARTPGLSVRPVPLCAPGSCFPGVV 99



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>SDK2_CHICK (Q8AV57) Protein sidekick-2 precursor|
          Length = 2177

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 43   PASQPGXTLSPPSPCYPGSKIP 108
            P SQPG    PPS   PGS+ P
Sbjct: 2148 PPSQPGTLYRPPSSLAPGSRAP 2169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,729,991
Number of Sequences: 219361
Number of extensions: 1022309
Number of successful extensions: 3338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3336
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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