ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal1j12 |
|---|---|
| Clone Library Name | barley_pub |
>MENA_SYNY3 (P73962) Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase| (EC 2.5.1.-) (DHNA-octaprenyltransferase) Length = 307 Score = 108 bits (269), Expect = 2e-23 Identities = 66/198 (33%), Positives = 91/198 (45%) Frame = +3 Query: 48 SVVNIVGSRAVTQYXXXXXXXXXXXXXXXXXXXXXDVRFIVLVLCAILCGYVYQCPPFRL 227 SVVN+ G+R + D + L+ AI GY YQ PPFRL Sbjct: 88 SVVNLTGNRNLVFLISNFFLLAGVLGLMSMSWRAQDWTVLELIGVAIFLGYTYQGPPFRL 147 Query: 228 SYRGLGEPLCFAAFGPLATXXXXXXXXXXXXXXGTALLPITKTVIASSILVGLTTTLILF 407 Y GLGE +C FGPLA + ++ S+ VG++T +ILF Sbjct: 148 GYLGLGELICLITFGPLAIAAAYYSQSQS----------FSWNLLTPSVFVGISTAIILF 197 Query: 408 CSHFHQIDGDRAVGKMSPLVRIGTKTGSTVVTXXXXXXXXXXXXFGISRCLPPSCIVLGA 587 CSHFHQ++ D A GK SP+VR+GTK GS V+T G+ P +L Sbjct: 198 CSHFHQVEDDLAAGKKSPIVRLGTKLGSQVLT-LSVVSLYLITAIGVLCHQAPWQTLLII 256 Query: 588 LTLPLGKWVVDYVQRNHD 641 +LP ++ +V + HD Sbjct: 257 ASLPWAVQLIRHVGQYHD 274
>EX5B_CHLTR (O84645) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| Length = 1026 Score = 33.1 bits (74), Expect = 0.73 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = +2 Query: 203 LSVPAVPIE---LSWPRRTIVFCCIWPIGYISFLLLKQQQKHFKRDCASPY-HQNSHSFI 370 LS PA P++ W + FC PI + LLK Q+H K CA Y H S + + Sbjct: 289 LSAPASPLDPFFQDWIQLAHPFCQKEPIFHT---LLKSVQQHLKTHCAQSYSHDESIATL 345 Query: 371 DSCRVDNHTDTLLQPL 418 +S H DT++ L Sbjct: 346 ESLLA--HNDTVVSQL 359
>Y013_MYCPN (P75100) Hypothetical UPF0134 protein MPN013 (D12_orf257)| Length = 257 Score = 32.7 bits (73), Expect = 0.95 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -3 Query: 167 DEPDVPCFSKGPK*PSKPEQ 108 D+PD PC +KGPK P PE+ Sbjct: 58 DQPDGPCITKGPKEPGGPEE 77
>ZN638_HUMAN (Q14966) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger| matrin-like protein) (Cutaneous T-cell lymphoma-associated antigen se33-1) (CTCL tumor antigen se33-1) Length = 1978 Score = 31.2 bits (69), Expect = 2.8 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Frame = +2 Query: 347 HQNSHSFIDSCRVDNHTDTLLQP-LSPDRRRQGCRKDVSPGKNRHQNRLDSSNACDRRPL 523 HQN+ + I+SCR P + P RR +G RK+ + R S + RR Sbjct: 444 HQNTSTHIESCRQLRQQYPDWNPEILPSRRNEGNRKENETPRRR------SHSPSPRRSR 497 Query: 524 RSLGG--FRHKQMPPAILHCPWRPDSPS 601 RS FR + P +H +RP S S Sbjct: 498 RSSSSHRFRRSRSP---MHYMYRPRSRS 522
>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG| Length = 931 Score = 30.8 bits (68), Expect = 3.6 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = +2 Query: 62 CWQSSSDTVCSEPFSSARVWRAILGLC*SRGRQVHRVGAMCNPLRLCLSVPAVP 223 CW S D + S +VW G S G VH + N + C+ PA P Sbjct: 825 CWDPSGDFLASVSEDMVKVWTLGTG---SEGECVHELSCNGNKFQSCVFHPAYP 875
>TBCD_BOVIN (Q28205) Tubulin-specific chaperone D (Tubulin-folding cofactor D)| (Beta-tubulin cofactor D) Length = 1199 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 299 LKQQQKHFKRDCASPYHQNSHSFIDSCRVDNHTDTLLQPL 418 L Q KH KR+ PY +DSCR+ + TLL+ L Sbjct: 264 LAQIFKHGKREDCLPYAATVLQCLDSCRLPDSNQTLLRKL 303
>MENA_MYCTU (P65650) Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase| (EC 2.5.1.-) (DHNA-octaprenyltransferase) Length = 292 Score = 30.0 bits (66), Expect = 6.2 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 3/144 (2%) Frame = +3 Query: 54 VNIVGSRAVTQYXXXXXXXXXXXXXXXXXXXXXDVRFIVLVLCAILC---GYVYQCPPFR 224 V +VGSR T + L+ +C ++Y Sbjct: 76 VRLVGSRLATPRSVLTAAMTSLALGALAGLVLALLSAPWLIAVGAICIAGAWLYTGGSKP 135 Query: 225 LSYRGLGEPLCFAAFGPLATXXXXXXXXXXXXXXGTALLPITKTVIASSILVGLTTTLIL 404 Y G GE F FGP+A T L + +A ++ G + +L Sbjct: 136 YGYAGFGELAVFVFFGPVAVLGTQY----------TQALRVDWVGLAQAVATGALSCSVL 185 Query: 405 FCSHFHQIDGDRAVGKMSPLVRIG 476 ++ I D K++ VR+G Sbjct: 186 VANNLRDIPTDARADKITLAVRLG 209
>MENA_MYCBO (P65651) Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase| (EC 2.5.1.-) (DHNA-octaprenyltransferase) Length = 292 Score = 30.0 bits (66), Expect = 6.2 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 3/144 (2%) Frame = +3 Query: 54 VNIVGSRAVTQYXXXXXXXXXXXXXXXXXXXXXDVRFIVLVLCAILC---GYVYQCPPFR 224 V +VGSR T + L+ +C ++Y Sbjct: 76 VRLVGSRLATPRSVLTAAMTSLALGALAGLVLALLSAPWLIAVGAICIAGAWLYTGGSKP 135 Query: 225 LSYRGLGEPLCFAAFGPLATXXXXXXXXXXXXXXGTALLPITKTVIASSILVGLTTTLIL 404 Y G GE F FGP+A T L + +A ++ G + +L Sbjct: 136 YGYAGFGELAVFVFFGPVAVLGTQY----------TQALRVDWVGLAQAVATGALSCSVL 185 Query: 405 FCSHFHQIDGDRAVGKMSPLVRIG 476 ++ I D K++ VR+G Sbjct: 186 VANNLRDIPTDARADKITLAVRLG 209
>M3K4_HUMAN (Q9Y6R4) Mitogen-activated protein kinase kinase kinase 4 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4) (MEKK 4) (MAP three kinase 1) Length = 1607 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 171 LVLCAILCGYVYQCPPFRLSYRGLGEP 251 LVLC +L +++C RL R GEP Sbjct: 617 LVLCRVLLNVIHECLKLRLEQRPAGEP 643
>M3K4_MOUSE (O08648) Mitogen-activated protein kinase kinase kinase 4 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4) (MEKK 4) Length = 1597 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 171 LVLCAILCGYVYQCPPFRLSYRGLGEP 251 LVLC +L +++C RL R GEP Sbjct: 608 LVLCRVLLNVIHECLKLRLEQRPAGEP 634 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,864,186 Number of Sequences: 219361 Number of extensions: 1834950 Number of successful extensions: 5317 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5047 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5314 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
