ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal1h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1R1B19_SOLDE (Q6L406) Putative late blight resistance protein hom... 33 0.47
2R1A3_SOLDE (Q6L440) Putative late blight resistance protein homo... 32 1.4
3ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 4.0
4LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late en... 30 5.2
5NINAC_DROME (P10676) Neither inactivation nor afterpotential pro... 30 6.8

>R1B19_SOLDE (Q6L406) Putative late blight resistance protein homolog R1B-19|
          Length = 1582

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 123  KAMKAVSALVGIDSLSVDMATRKMTVIGMVDPVDVVS--KLRKAWSASI 263
            KA K +    GI+S+S D   +K+TV G VD    +S  +  KAW A +
Sbjct: 1375 KAFKRLFLCPGIESVSTDRKEKKLTVTGDVDAGSSISCGETEKAWHARV 1423



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>R1A3_SOLDE (Q6L440) Putative late blight resistance protein homolog R1A-3|
          Length = 760

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 14/34 (41%), Positives = 25/34 (73%)
 Frame = +3

Query: 126 AMKAVSALVGIDSLSVDMATRKMTVIGMVDPVDV 227
           A K +++L G+DS+S+DM  +K+TV G ++  +V
Sbjct: 714 AFKRLASLPGVDSISIDMIEKKLTVGGDMNANEV 747



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>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 561 RAFLSRWRRSWGSPPCSARRSGCSCRGCGKPNKPTYT 451
           +AF +R R   G  PC      CSC  C  P   T T
Sbjct: 149 KAFENRQRSHTGQRPCKECGQACSCLSCQSPPMKTQT 185



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>LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late envelope protein|
           12) (Small proline-rich-like epidermal differentiation
           complex protein 1A)
          Length = 110

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 113 PCRCSAPASPQFSSTCXPRCELRTRPAGGGAVTDXPG 3
           P +C AP SP  SS C P       P+ GG  +   G
Sbjct: 33  PPQCPAPCSPAVSSCCGPSSGSCCGPSSGGCCSSGGG 69



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>NINAC_DROME (P10676) Neither inactivation nor afterpotential protein C (EC|
            2.7.11.1)
          Length = 1501

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 408  PPQPTEQQLAELMNQYRSAYSAYHNPYMNNHYVVQSMEENPNS 536
            P Q    Q+   MN Y +AY++Y++ Y N ++ V       NS
Sbjct: 1278 PQQLRRNQMQMNMNAYNNAYNSYNSNYNNQNWGVHRSGSRRNS 1320


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,197,227
Number of Sequences: 219361
Number of extensions: 734614
Number of successful extensions: 2715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2710
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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