>PALI1_KLULA (Q6CXZ7) pH-response regulator palI/RIM9 homolog 1|
          Length = 220

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 23/93 (24%), Positives = 44/93 (47%)
 Frame = +2

Query: 122 VLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTKSVEYM 301
           +LL+++  F  + V  LFA      ++ + W+    SV +F    S++     T  V  +
Sbjct: 89  LLLVHVLSFVCVLVFWLFAI-----LICIKWLNTSKSVLLFAVGWSMV-----TFMVSLL 138

Query: 302 PFSLSLTLTLSAIVWFLYGLLIKDKYVALPNIL 400
            F + + +  S + W  + +L+   +VAL  IL
Sbjct: 139 GFLIDVLMFASHVTWSSWLMLVSAFFVALSGIL 171

>O2T27_HUMAN (Q8NH04) Olfactory receptor 2T27 (Olfactory receptor OR1-67)|
          Length = 317

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +2

Query: 245 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGM 418
           + P  ++ +V+  +++ +   +    L LTL+   +FL GL+  D+YVA+ N L +   M
Sbjct: 77  IVPKMLVDQVMSQRAISFAGCTAQHFLYLTLAGAEFFLLGLMSYDRYVAICNPLHYPVLM 136

Query: 419 IQMVLYM 439
            + + ++
Sbjct: 137 SRKICWL 143

>OR2T1_HUMAN (O43869) Olfactory receptor 2T1 (Olfactory receptor 1-25) (OR1-25)|
           (Olfactory receptor OR1-61)
          Length = 311

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 245 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGM 418
           + P  ++  ++  +++ ++  +    L LTL    +FL GL+  D+YVA+ N L +   M
Sbjct: 76  IVPKMLVNYLLDQRTISFVGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICNPLRYPVLM 135

Query: 419 IQMVLYM 439
            + V +M
Sbjct: 136 SRRVCWM 142

>DCTA1_PSEAE (Q9I713) C4-dicarboxylate transport protein 1|
          Length = 449

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
 Frame = +2

Query: 119 IVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTKSVEY 298
           IV L  +  FG +   T  A +G   +  LG + + F     V  ++++G V++   V  
Sbjct: 199 IVRLAPLGVFGAVAFTT--ARYGVDSLSHLGALVLVFYATCLVFVMAVLGSVLRLSGVRM 256

Query: 299 MPF-------------SLSLTLTLSAIVWFLYGLLIKDKYVALP-------NILGFTFGM 418
           +PF             + S    L  ++  L  + I+   V L        N+ GF+  +
Sbjct: 257 LPFLRYFREELLIVMGTASSDAVLPQVMRKLEHMGIRSSTVGLVIPTGYSFNLDGFSIYL 316

Query: 419 IQMVLYMFYMNATPVVATD 475
              V+++ ++  TP+  TD
Sbjct: 317 TLAVVFIAHVTGTPLAMTD 335

>RS7_DEHSC (Q3ZZM7) 30S ribosomal protein S7|
          Length = 156

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 411 KVKPRMFGSATY-LSLMSRP*RNQTMALRVSVREREK 304
           +VKPR  G ATY + +  RP R QTMA+R  ++   K
Sbjct: 74  EVKPRRVGGATYQVPIEVRPDRAQTMAMRWIIKAARK 110

>RS7_DEHE1 (Q3Z984) 30S ribosomal protein S7|
          Length = 156

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 411 KVKPRMFGSATY-LSLMSRP*RNQTMALRVSVREREK 304
           +VKPR  G ATY + +  RP R QTMA+R  ++   K
Sbjct: 74  EVKPRRVGGATYQVPIEVRPDRAQTMAMRWIIKAARK 110

>Y110_METJA (Q57574) Hypothetical protein MJ0110|
          Length = 93

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 248 APLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILGFTF 412
           A L  + + +K K +  +  +  +T T    +W +YG+L  D  + + NIL   F
Sbjct: 23  ASLPQLIKSLKEKDMSNISLAFVITFTTGLTLWLIYGILRNDYPIIVFNILSLMF 77

>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2333

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 597  SPAISVTGRTSAHELLSALPTLITTTWSSAGTFHASFPSLASVATT 460
            S A  V+G +S  E+ S+LP+    T+  +G FH +FP++  V  T
Sbjct: 1698 SGAAEVSGESSGAEVGSSLPS---GTYEGSGNFHPAFPTVFLVDRT 1740

>CYB_TRYBB (P00164) Cytochrome b|
          Length = 363

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
 Frame = +2

Query: 107 FTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVFVAPLSIIGRVIKTK 286
           FT+ + LLL I  F  I ++ LF  H       L W  +GF + VF+  ++ IG V+   
Sbjct: 77  FTSLLYLLLYIHIFKSITLIILFDTH------ILVWF-IGFILFVFIIIIAFIGYVLPCT 129

Query: 287 SVEYMPFSL--SLTLTLSAI-VWFLYGL----LIKD--------KYVALPNILGFTFGMI 421
            + Y   ++  ++  T+  + +W  Y +     I D         +V LP IL     +I
Sbjct: 130 MMSYWGLTVFSNIIATVPILGIWLCYWIWGSEFINDFTLLKLHVLHVLLPFIL-----LI 184

Query: 422 QMVLYMFYMN 451
            ++L++F ++
Sbjct: 185 ILILHLFCLH 194

>OR2T2_HUMAN (Q6IF00) Olfactory receptor 2T2 (Olfactory receptor OR1-43)|
          Length = 324

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +2

Query: 233 VCVFVAPLSIIGRVIKTKSVEYMPFSLSLTLTLSAI--VWFLYGLLIKDKYVALPNILGF 406
           +C+ V P  +   + K K++ ++  ++ + L L+ I   +FL GL+  D+YVA+ N L +
Sbjct: 75  ICITV-PKMLQDLLSKDKTISFLGCAVQIFLYLTLIGGEFFLLGLMAYDRYVAVCNPLRY 133

Query: 407 TFGMIQMV 430
              M + V
Sbjct: 134 PLLMNRRV 141

>Y112B_HAEIN (O86233) Hypothetical protein HI1126.1|
          Length = 371

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/50 (42%), Positives = 29/50 (58%)
 Frame = +2

Query: 95  KAKIFTAKIVLLLNIAGFGLIFVLTLFAFHGETRVVSLGWICVGFSVCVF 244
           K KI+   ++ LLNIAG G IF   L A +G    V++ WI +G   C+F
Sbjct: 55  KTKIW---LIQLLNIAGTGPIFGPILGALYGP---VAMLWIVIG---CIF 95

>PUS3_YEAST (P31115) tRNA pseudouridine synthase 3 (EC 5.4.99.-) (tRNA-uridine|
           isomerase 3) (tRNA pseudouridylate synthase 3)
           (Depressed growth-rate protein DEG1)
          Length = 442

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 279 LITRPMMLRGATKTHTEKPTQIQPSETTRVSPWKAKRVRTKMSPK 145
           LI R   L  A K H+EK   I+ ++  ++S  +  R + K +PK
Sbjct: 38  LIRRITELENANKPHSEKFQHIEDNKKRKISQEEVTRSKAKKAPK 82

>MRAY_PELUB (Q4FPK2) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 361

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
 Frame = +2

Query: 95  KAKIFTAKIVLLLNIAGFGLIFVLT----LFAFHGETRVVSLGWICVGFSVCVFVAPLSI 262
           K KI +  ++ ++ I G   +   T    L+    +  +++LGW  + FS+ + V   + 
Sbjct: 132 KFKIISQILIAIVGIYGLTQLSQNTELTNLYFPFFKNLIINLGWFFIPFSIFIIVGSSNA 191

Query: 263 IGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILG------FTFGMIQ 424
           +        +  +P  + L     A + ++ G ++  +Y+ +P + G      F   +I 
Sbjct: 192 VNLTDGLDGLATVP--VILVAACFAFISYVTGNIVFSEYLNIPYLEGMGEVSVFCGSIIG 249

Query: 425 MVLYMFYMNATP 460
             L   + NA P
Sbjct: 250 ACLGFLWFNAPP 261

>Y1376_HAEIN (P44170) Hypothetical protein HI1376|
          Length = 291

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 284 KSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGMIQMVLYMFYMNA 454
           KS    P +L ++ +L+A V F+Y  L + ++ +   I G   G++     +FY+ A
Sbjct: 174 KSGGAFPATLFISFSLAACVMFIYLFLKRVQWTSSSVIGGIVLGVLNFFNILFYIKA 230

>Y3374_BACAN (Q81N43) UPF0078 membrane protein BA3374/GBAA3374/BAS3128|
          Length = 190

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +2

Query: 215 ICVGFSVCVFVAPLSI-IGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALP 391
           +     V +F++PL + +G V+   ++ +  + +SL+  L+ I  F+Y L+ +DK +   
Sbjct: 104 VATATGVFLFLSPLGVLVGFVVFVLTLLFTKY-VSLSSMLAGIALFIYSLIFEDKVIIAL 162

Query: 392 NIL 400
           ++L
Sbjct: 163 SLL 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,391,298
Number of Sequences: 219361
Number of extensions: 981062
Number of successful extensions: 3877
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3873
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)