| Clone Name | baal1e10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061L19, full insert sequence Length = 3032 Score = 329 bits (166), Expect = 5e-87 Identities = 300/345 (86%), Gaps = 11/345 (3%) Strand = Plus / Plus Query: 141 cccgatccggcgacgatggagggcggcgccg------acgccttcgggtcctcgaccgcg 194 |||||||||||||||||||| ||||||| || |||||||||||||| |||||||| Sbjct: 95 cccgatccggcgacgatggatggcggcggcggaggcgacgccttcgggtccgcgaccgcg 154 Query: 195 ccgctggcctggcacgacttcctcgagcgcatgcgccagccttccgccgccgaatttgtc 254 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||| Sbjct: 155 ccgctggcctggcacgacttcctggagcgcatgcgccagccctccgccgccgacttcgtc 214 Query: 255 aagtccatcaagggctttatcatgaatttctcaaacagagcacctgatccagagagagat 314 ||||||||||||||||||||| | | ||||| |||||||| ||||| || || ||| Sbjct: 215 aagtccatcaagggctttatcgtaacgttctcgaacagagctcctgaccctgaacatgat 274 Query: 315 agtgcagctgttcaagagttccttgaaaatatggaaggtgctttcagagcccacactcct 374 ||||| ||||||||||| ||||| ||||||||||||||||||||||| || ||||| || Sbjct: 275 agtgcggctgttcaagaattcctggaaaatatggaaggtgctttcagggctcacaccccc 334 Query: 375 tgggctggcagttctgaagaagaactagagagtgccggtgagggcctcgagaagtatgtt 434 |||||||| |||||||||||||||||||| |||||| |||||| ||||| || ||| Sbjct: 335 tgggctggaagttctgaagaagaactagaaagtgcc-----gggccttgagaaatacgtt 389 Query: 435 atgacaaagctgtataatcgggtatttgcttcggtcccggaagat 479 ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 390 atgacaaagctgttcaatcgggtatttgcttctgtcccggaagat 434
>ref|NM_187521.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1680 Score = 214 bits (108), Expect = 2e-52 Identities = 153/168 (91%) Strand = Plus / Plus Query: 312 gatagtgcagctgttcaagagttccttgaaaatatggaaggtgctttcagagcccacact 371 |||||||| ||||||||||| ||||| ||||||||||||||||||||||| || ||||| Sbjct: 412 gatagtgcggctgttcaagaattcctggaaaatatggaaggtgctttcagggctcacacc 471 Query: 372 ccttgggctggcagttctgaagaagaactagagagtgccggtgagggcctcgagaagtat 431 || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct: 472 ccctgggctggaagttctgaagaagaactagaaagtgccggtgagggccttgagaaatac 531 Query: 432 gttatgacaaagctgtataatcgggtatttgcttcggtcccggaagat 479 |||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 532 gttatgacaaagctgttcaatcgggtatttgcttctgtcccggaagat 579 Score = 157 bits (79), Expect = 4e-35 Identities = 94/99 (94%) Strand = Plus / Plus Query: 170 cgacgccttcgggtcctcgaccgcgccgctggcctggcacgacttcctcgagcgcatgcg 229 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 21 cgacgccttcgggtccgcgaccgcgccgctggcctggcacgacttcctggagcgcatgcg 80 Query: 230 ccagccttccgccgccgaatttgtcaagtccatcaaggg 268 |||||| ||||||||||| || ||||||||||||||||| Sbjct: 81 ccagccctccgccgccgacttcgtcaagtccatcaaggg 119
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 165 bits (83), Expect = 2e-37 Identities = 121/134 (90%), Gaps = 6/134 (4%) Strand = Plus / Plus Query: 141 cccgatccggcgacgatggagggcggcgccg------acgccttcgggtcctcgaccgcg 194 |||||||||||||||||||| ||||||| || |||||||||||||| |||||||| Sbjct: 8602228 cccgatccggcgacgatggatggcggcggcggaggcgacgccttcgggtccgcgaccgcg 8602287 Query: 195 ccgctggcctggcacgacttcctcgagcgcatgcgccagccttccgccgccgaatttgtc 254 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||| Sbjct: 8602288 ccgctggcctggcacgacttcctggagcgcatgcgccagccctccgccgccgacttcgtc 8602347 Query: 255 aagtccatcaaggg 268 |||||||||||||| Sbjct: 8602348 aagtccatcaaggg 8602361 Score = 139 bits (70), Expect = 9e-30 Identities = 97/106 (91%) Strand = Plus / Plus Query: 312 gatagtgcagctgttcaagagttccttgaaaatatggaaggtgctttcagagcccacact 371 |||||||| ||||||||||| ||||| ||||||||||||||||||||||| || ||||| Sbjct: 8603302 gatagtgcggctgttcaagaattcctggaaaatatggaaggtgctttcagggctcacacc 8603361 Query: 372 ccttgggctggcagttctgaagaagaactagagagtgccggtgagg 417 || |||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 8603362 ccctgggctggaagttctgaagaagaactagaaagtgccggtgagg 8603407 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 415 agggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttcggtcccgg 474 ||||||| ||||| || |||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 8604389 agggccttgagaaatacgttatgacaaagctgttcaatcgggtatttgcttctgtcccgg 8604448 Query: 475 aagat 479 ||||| Sbjct: 8604449 aagat 8604453
>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02, complete sequence Length = 137327 Score = 165 bits (83), Expect = 2e-37 Identities = 121/134 (90%), Gaps = 6/134 (4%) Strand = Plus / Plus Query: 141 cccgatccggcgacgatggagggcggcgccg------acgccttcgggtcctcgaccgcg 194 |||||||||||||||||||| ||||||| || |||||||||||||| |||||||| Sbjct: 83200 cccgatccggcgacgatggatggcggcggcggaggcgacgccttcgggtccgcgaccgcg 83259 Query: 195 ccgctggcctggcacgacttcctcgagcgcatgcgccagccttccgccgccgaatttgtc 254 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||| Sbjct: 83260 ccgctggcctggcacgacttcctggagcgcatgcgccagccctccgccgccgacttcgtc 83319 Query: 255 aagtccatcaaggg 268 |||||||||||||| Sbjct: 83320 aagtccatcaaggg 83333 Score = 139 bits (70), Expect = 9e-30 Identities = 97/106 (91%) Strand = Plus / Plus Query: 312 gatagtgcagctgttcaagagttccttgaaaatatggaaggtgctttcagagcccacact 371 |||||||| ||||||||||| ||||| ||||||||||||||||||||||| || ||||| Sbjct: 84274 gatagtgcggctgttcaagaattcctggaaaatatggaaggtgctttcagggctcacacc 84333 Query: 372 ccttgggctggcagttctgaagaagaactagagagtgccggtgagg 417 || |||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 84334 ccctgggctggaagttctgaagaagaactagaaagtgccggtgagg 84379 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 415 agggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttcggtcccgg 474 ||||||| ||||| || |||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 85361 agggccttgagaaatacgttatgacaaagctgttcaatcgggtatttgcttctgtcccgg 85420 Query: 475 aagat 479 ||||| Sbjct: 85421 aagat 85425
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 165 bits (83), Expect = 2e-37 Identities = 121/134 (90%), Gaps = 6/134 (4%) Strand = Plus / Plus Query: 141 cccgatccggcgacgatggagggcggcgccg------acgccttcgggtcctcgaccgcg 194 |||||||||||||||||||| ||||||| || |||||||||||||| |||||||| Sbjct: 8600063 cccgatccggcgacgatggatggcggcggcggaggcgacgccttcgggtccgcgaccgcg 8600122 Query: 195 ccgctggcctggcacgacttcctcgagcgcatgcgccagccttccgccgccgaatttgtc 254 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||| Sbjct: 8600123 ccgctggcctggcacgacttcctggagcgcatgcgccagccctccgccgccgacttcgtc 8600182 Query: 255 aagtccatcaaggg 268 |||||||||||||| Sbjct: 8600183 aagtccatcaaggg 8600196 Score = 139 bits (70), Expect = 9e-30 Identities = 97/106 (91%) Strand = Plus / Plus Query: 312 gatagtgcagctgttcaagagttccttgaaaatatggaaggtgctttcagagcccacact 371 |||||||| ||||||||||| ||||| ||||||||||||||||||||||| || ||||| Sbjct: 8601137 gatagtgcggctgttcaagaattcctggaaaatatggaaggtgctttcagggctcacacc 8601196 Query: 372 ccttgggctggcagttctgaagaagaactagagagtgccggtgagg 417 || |||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 8601197 ccctgggctggaagttctgaagaagaactagaaagtgccggtgagg 8601242 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 415 agggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttcggtcccgg 474 ||||||| ||||| || |||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 8602224 agggccttgagaaatacgttatgacaaagctgttcaatcgggtatttgcttctgtcccgg 8602283 Query: 475 aagat 479 ||||| Sbjct: 8602284 aagat 8602288
>gb|DQ099168.1| Arachis hypogaea clone Ah1TC3B04 microsatellite sequence Length = 288 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 207 cacgacttcctcgagcgcatgcgccagccttccgccgccgaatttgtcaagtccatcaag 266 ||||||||||||||||| |||||||| || ||||||||||| || ||||| |||||||| Sbjct: 81 cacgacttcctcgagcggatgcgccaaccctccgccgccgatttcgtcaaagccatcaag 140
>dbj|AB025631.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPN9 Length = 81035 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 415 agggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttc 466 ||||||| ||||||||||||||||||||||| | || |||||| |||||||| Sbjct: 351 agggcctggagaagtatgttatgacaaagctatttactcgggtgtttgcttc 402
>gb|DQ099140.1| Arachis hypogaea clone AH2TC7A02 microsatellite sequence Length = 401 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 207 cacgacttcctcgagcgcatgcgccagccttccgccgccgaatttgtcaag 257 ||||||||||||||||| |||||||| || ||||||||||| || |||||| Sbjct: 291 cacgacttcctcgagcggatgcgccaaccctccgccgccgatttcgtcaag 241
>ref|NM_112867.3| Arabidopsis thaliana unknown protein AT3G19770 transcript variant AT3G19770.1 mRNA, complete cds Length = 2010 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 417 ggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttc 466 ||||| ||||||||||||||||||||||| | || |||||| |||||||| Sbjct: 327 ggcctggagaagtatgttatgacaaagctatttactcgggtgtttgcttc 376
>ref|NM_001035651.1| Arabidopsis thaliana unknown protein AT3G19770 transcript variant AT3G19770.2 mRNA, complete cds Length = 2010 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 417 ggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttc 466 ||||| ||||||||||||||||||||||| | || |||||| |||||||| Sbjct: 327 ggcctggagaagtatgttatgacaaagctatttactcgggtgtttgcttc 376
>gb|AY079338.1| Arabidopsis thaliana unknown protein (At3g19770) mRNA, complete cds Length = 1594 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 417 ggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttc 466 ||||| ||||||||||||||||||||||| | || |||||| |||||||| Sbjct: 241 ggcctggagaagtatgttatgacaaagctatttactcgggtgtttgcttc 290
>gb|AY045810.1| Arabidopsis thaliana unknown protein (At3g19770) mRNA, complete cds Length = 2013 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 417 ggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttc 466 ||||| ||||||||||||||||||||||| | || |||||| |||||||| Sbjct: 320 ggcctggagaagtatgttatgacaaagctatttactcgggtgtttgcttc 369
>emb|BX823509.1|CNS0A4QU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS45ZG02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1988 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 417 ggcctcgagaagtatgttatgacaaagctgtataatcgggtatttgcttc 466 ||||| ||||||||||||||||||||||| | || |||||| |||||||| Sbjct: 305 ggcctggagaagtatgttatgacaaagctatttactcgggtgtttgcttc 354
>gb|AE006031.1| Caulobacter crescentus CB15 section 357 of 359 of the complete genome Length = 10388 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 162 ggcggcgccgacgccttcgggtcc 185 |||||||||||||||||||||||| Sbjct: 4401 ggcggcgccgacgccttcgggtcc 4424
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gacgatggagggcggcgccga 172 ||||||||||||||||||||| Sbjct: 2640282 gacgatggagggcggcgccga 2640262
>gb|AC002044.1|HUAC002044 Human Chromosome 16 BAC clone CIT987SK-A-418G10, complete sequence Length = 218074 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 cctttgacctcccccacccccatct 86 ||||||| ||||||||||||||||| Sbjct: 155267 cctttgatctcccccacccccatct 155243
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 tcctcgagcgcatgcgccagc 234 ||||||||||||||||||||| Sbjct: 890505 tcctcgagcgcatgcgccagc 890525
>emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project) Length = 103534 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 415 agggcctcgagaagtatgttatgacaaag 443 ||||||| ||||||||||| ||||||||| Sbjct: 32212 agggcctggagaagtatgtcatgacaaag 32184
>gb|AC132068.2| Homo sapiens chromosome 16 clone CTD-2326C4, complete sequence Length = 142641 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 cctttgacctcccccacccccatct 86 ||||||| ||||||||||||||||| Sbjct: 63384 cctttgatctcccccacccccatct 63360
>ref|XM_523416.1| PREDICTED: Pan troglodytes AT-binding transcription factor 1 (LOC468024), mRNA Length = 13500 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 ctttgacctcccccacccccatct 86 |||||| ||||||||||||||||| Sbjct: 3416 ctttgatctcccccacccccatct 3393
>gb|AC101687.11| Mus musculus chromosome 8, clone RP23-205D7, complete sequence Length = 185997 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 tggagggcggcgccgacgcc 176 |||||||||||||||||||| Sbjct: 177169 tggagggcggcgccgacgcc 177150
>gb|AC161520.6| Mus musculus chromosome 7, clone RP24-282D19, complete sequence Length = 165232 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 caagagttccttgaaaatat 346 |||||||||||||||||||| Sbjct: 93176 caagagttccttgaaaatat 93157
>gb|AC158348.4| Mus musculus chromosome 8, clone RP24-134G9, complete sequence Length = 175836 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 tggagggcggcgccgacgcc 176 |||||||||||||||||||| Sbjct: 85198 tggagggcggcgccgacgcc 85179
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gggcggcgccgacgccttcg 180 |||||||||||||||||||| Sbjct: 2999677 gggcggcgccgacgccttcg 2999696
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gggcggcgccgacgccttcg 180 |||||||||||||||||||| Sbjct: 48537 gggcggcgccgacgccttcg 48518
>gb|AC136018.5| Mus musculus BAC clone RP24-125E6 from chromosome 7, complete sequence Length = 210491 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 caagagttccttgaaaatat 346 |||||||||||||||||||| Sbjct: 188868 caagagttccttgaaaatat 188887
>ref|XM_759010.1| Theileria parva strain Muguga chromosome 4 hypothetical protein (TP04_0468) partial mRNA Length = 2430 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 agtatgttatgacaaagctg 446 |||||||||||||||||||| Sbjct: 308 agtatgttatgacaaagctg 289
>gb|AC158751.7| Mus musculus chromosome 7, clone RP23-413C19, complete sequence Length = 198442 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cctcccccacccccatcttc 88 |||||||||||||||||||| Sbjct: 82351 cctcccccacccccatcttc 82332
>gb|AY330485.1| Saccharopolyspora erythraea amino acid permease gene, partial cds; transport protein, helix-turn-helix regulator (pkeRI), P450 monooxygenase (pkePI), P450 monooxygenase (pkePII), P450 monooxygenase (pkePIII), type I PKS (pkeAI), type I PKS (pkeAII), and type I PKS (pkeAIII) genes, complete cds; pkeAIV gene, complete sequence; type I PKS, monooxygenases, transporter, ketoacyl-ACP synthase (typeII), acyl carrier protien, amino transferase, and DNA-binding protein genes, complete cds; and unknown genes Length = 68451 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tcccccctcccgatccggcg 152 |||||||||||||||||||| Sbjct: 66590 tcccccctcccgatccggcg 66609
>emb|Z81363.2|HS179D3 Human DNA sequence from clone RP1-179D3 on chromosome X Contains the 5' end of the ELF4 gene for E74-like factor 4 (ets domain transcription factor) (MEF, ELFR) and 2 CpG islands, complete sequence Length = 49217 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ccccacccccatcttcagca 92 |||||||||||||||||||| Sbjct: 9695 ccccacccccatcttcagca 9676
>emb|Z77249.2|HS358H7 Human DNA sequence from clone RP3-358H7 on chromosome X Contains a DEAD-box protein pseudogene and the gene for a novel E2F-like protein (LOC51270), complete sequence Length = 148864 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 acctcccccacccccatctt 87 |||||||||||||||||||| Sbjct: 57028 acctcccccacccccatctt 57047
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gggcggcgccgacgccttcg 180 |||||||||||||||||||| Sbjct: 3894139 gggcggcgccgacgccttcg 3894120
>emb|BX927252.5| Zebrafish DNA sequence from clone CH211-212O10 in linkage group 5, complete sequence Length = 176261 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 cctcgagaagtatgttatga 438 |||||||||||||||||||| Sbjct: 90723 cctcgagaagtatgttatga 90704
>gb|AC013549.9| Homo sapiens chromosome 11, clone RP11-47J17, complete sequence Length = 163180 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 acctcccccacccccatctt 87 |||||||||||||||||||| Sbjct: 46447 acctcccccacccccatctt 46428
>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence Length = 169479 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ttctcaaacagagcacctga 301 |||||||||||||||||||| Sbjct: 32092 ttctcaaacagagcacctga 32111
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ccgctgatccgaaccgccga 126 |||||||||||||||||||| Sbjct: 581816 ccgctgatccgaaccgccga 581835 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ccgctgatccgaaccgccga 126 |||||||||||||||||||| Sbjct: 581790 ccgctgatccgaaccgccga 581809
>ref|NG_005189.1| Mus musculus tumor protein D52, pseudogene (Tpd52-ps) on chromosome 8 Length = 2210 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tggagggcggcgccgacgcc 176 |||||||||||||||||||| Sbjct: 9 tggagggcggcgccgacgcc 28
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 cgacgatggagggcggcgcc 170 |||||||||||||||||||| Sbjct: 13545483 cgacgatggagggcggcgcc 13545502
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 atccggcgacgatggagggcggcg 168 |||||||||| ||||||||||||| Sbjct: 27199384 atccggcgaccatggagggcggcg 27199361
>gb|AC010729.8| Homo sapiens BAC clone RP11-350H23 from 2, complete sequence Length = 191934 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 acctcccccacccccatctt 87 |||||||||||||||||||| Sbjct: 100549 acctcccccacccccatctt 100568
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 164 cggcgccgacgccttcgggtcctcgaccgcgccgct 199 ||||||||||| ||||| | ||||||||||||||| Sbjct: 2436283 cggcgccgacgagttcggcttctcgaccgcgccgct 2436248
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 atccggcgacgatggagggcggcg 168 |||||||||| ||||||||||||| Sbjct: 56400 atccggcgaccatggagggcggcg 56377
>dbj|AP006562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1175F05 Length = 126842 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 cgacgatggagggcggcgcc 170 |||||||||||||||||||| Sbjct: 120411 cgacgatggagggcggcgcc 120430
>gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, complete sequence Length = 184753 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 cctttgacctcccccacccccatc 85 |||||| ||||||||||||||||| Sbjct: 126212 cctttgtcctcccccacccccatc 126189
>dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3074O7, complete sequence Length = 176017 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 aagtccatcaagggctttat 274 |||||||||||||||||||| Sbjct: 17477 aagtccatcaagggctttat 17496
>dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-867G23, complete sequences Length = 196662 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 aagtccatcaagggctttat 274 |||||||||||||||||||| Sbjct: 184571 aagtccatcaagggctttat 184590
>emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chromosome 4, complete sequence Length = 227165 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 cctcccccacccccatcttc 88 |||||||||||||||||||| Sbjct: 118261 cctcccccacccccatcttc 118280 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,097,197 Number of Sequences: 3902068 Number of extensions: 4097197 Number of successful extensions: 89473 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88428 Number of HSP's gapped (non-prelim): 1043 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)