ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal1e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC5A1_SHEEP (P53791) Sodium/glucose cotransporter 1 (Na(+)/gluco... 32 1.4
2YE25_CAEEL (Q20593) Hypothetical protein F49C12.5 32 1.8
3CCDC9_MOUSE (Q8VC31) Coiled-coil domain-containing protein 9 31 2.4
4GCST_PHOLL (Q7N197) Aminomethyltransferase (EC 2.1.2.10) (Glycin... 30 4.1
5FMT_WOLPM (Q73GR6) Methionyl-tRNA formyltransferase (EC 2.1.2.9) 30 4.1
6RL6_HALSA (Q9HPB8) 50S ribosomal protein L6P (HL10) 30 7.0
7ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disint... 30 7.0
8RR19_PORPU (P51310) Chloroplast 30S ribosomal protein S19 30 7.0
9CCNA2_MOUSE (P51943) Cyclin-A2 (Cyclin-A) 30 7.0
10ALK_HUMAN (Q9UM73) ALK tyrosine kinase receptor precursor (EC 2.... 29 9.2
11CDH_ENTCL (Q9Z6C1) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.... 29 9.2
12SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 29 9.2
13SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 29 9.2
14ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.... 29 9.2

>SC5A1_SHEEP (P53791) Sodium/glucose cotransporter 1 (Na(+)/glucose|
           cotransporter 1) (High affinity sodium-glucose
           cotransporter)
          Length = 664

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 96  ILLGALLAFLKPVASSRQHELCWFCKDSKEE 188
           I++ A+  F KP+A    + LCW  ++SKEE
Sbjct: 539 IVILAISLFTKPIADVHLYRLCWSLRNSKEE 569



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>YE25_CAEEL (Q20593) Hypothetical protein F49C12.5|
          Length = 507

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +1

Query: 163 GSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVSHRQPPPMV 342
           G++ IP + R  KA   +       +    N L +V ++N     S NE   H  PP +V
Sbjct: 34  GTSPIPVKERPLKAFITSAYYYSSSKSLGKNALALVMSINL--VKSPNELAQHPNPPELV 91

Query: 343 VSLGYETTQVVVSS 384
           +S   +TT ++V +
Sbjct: 92  ISAENDTTSIMVKT 105



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>CCDC9_MOUSE (Q8VC31) Coiled-coil domain-containing protein 9|
          Length = 543

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 107 PQENXRRLAGVGRSGWGWE----ERLGFGVGGRGETXVG 3
           PQ+  R  AGVGR+  GWE    E+L  G GGRG    G
Sbjct: 96  PQQGGR--AGVGRASQGWEDGAGEQLRGGPGGRGRRGRG 132



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>GCST_PHOLL (Q7N197) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage|
           system T protein)
          Length = 364

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 337 MVVSLGYETTQVVVSSAA-----AGSNIGMNSFPINVEVIDDDVAIYTSGPPPQARQQSS 501
           +V  L  +  ++VV+SA      A  N  + ++P++++V DD   I   GP  QA+ +S 
Sbjct: 100 IVYYLSNDFYRLVVNSATREKDLAWINEHVANYPVDIQVRDDLALIAVQGPDAQAKVES- 158

Query: 502 RTGPITVIIDDDSETTAG 555
                 ++ D+  +T AG
Sbjct: 159 ------LLNDEQKQTIAG 170



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>FMT_WOLPM (Q73GR6) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 299

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 409 MNSFPINVEVIDDDVAIYTSGPPPQARQQSSRTGPITVIIDDDSETTAGP 558
           +NS  + ++   + VA+YT  P P  R Q     P+ VI ++ +     P
Sbjct: 13  VNSLSLLLKSKSEVVAVYTKAPKPSGRGQKPTKSPVHVIAEESNIEVCTP 62



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>RL6_HALSA (Q9HPB8) 50S ribosomal protein L6P (HL10)|
          Length = 177

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 418 FPINVEVIDDDVAIYTSGPPPQARQQSSRTGPITVIIDDDSETTAGPAGE 567
           FP+ V+V  ++V I        AR+   R G   V++DD+  T +GP+ E
Sbjct: 91  FPMQVDVEGEEVVIQNFLGEKAARRTQIR-GDTDVVVDDEEVTLSGPSIE 139



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>ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 17)
           (ADAM-TS 17) (ADAM-TS17)
          Length = 1095

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -2

Query: 367 VWSRNPG*PP*EGAACVRQAH*WRVNPQY*VLQPLEASSGP 245
           VW  +PG    + AA V     WRV P    L PL A+ GP
Sbjct: 19  VWGLDPGTAVGDAAADVEVVLPWRVRPDDVHLPPLPAAPGP 59



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>RR19_PORPU (P51310) Chloroplast 30S ribosomal protein S19|
          Length = 92

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = +1

Query: 220 RQLREGQFPDLNLLPVVEALNTGGSLSINEPVSHRQP--PPMV-----VSLGYETTQVVV 378
           R + +G F D++LL  +EALNT G   + +  S      P M+     V  G +   V V
Sbjct: 3   RSIHKGPFIDVSLLTRIEALNTSGKKEVIKTWSRASTIIPDMIGHTIAVYNGKQHFPVFV 62

Query: 379 SSAAAGSNIG 408
           S    G  +G
Sbjct: 63  SDQMVGHKLG 72



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>CCNA2_MOUSE (P51943) Cyclin-A2 (Cyclin-A)|
          Length = 422

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 469 GPPPQARQQSSRTGPITVIIDDDSETTAGPAGEALDE 579
           GP PQ + ++ R  P+  +  +D   TAGP+ +A+ +
Sbjct: 51  GPAPQQKLKTRRVAPLKDLPINDEHVTAGPSWKAVSK 87



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>ALK_HUMAN (Q9UM73) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1620

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 62  WGWEERLGFGVGGRG 18
           WGWE R GFG GG G
Sbjct: 913 WGWETRGGFGGGGGG 927



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>CDH_ENTCL (Q9Z6C1) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)|
           (CDP-diacylglycerol phosphatidylhydrolase)
           (CDP-diglyceride hydrolase)
          Length = 247

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 275 HSILGVHSPLMSLSHTGSPLLWWLAWVTRPHRSWCH 382
           + I G  SPL++ +HT  P  +WLAW +R   +  H
Sbjct: 78  YRINGTESPLLTEAHT--PNFFWLAWQSRSFMTLKH 111



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>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 139 HRGSMSSAGSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVS 318
           +RG+++ AG    P R R+   +    RQ+R G FPD       +     G++++ +P  
Sbjct: 139 YRGTLTEAGRPS-PWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPAL 197

Query: 319 HR 324
           +R
Sbjct: 198 YR 199



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>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 580

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 139 HRGSMSSAGSARIPKRRRTTKASEAADRQLREGQFPDLNLLPVVEALNTGGSLSINEPVS 318
           +RG+++ AG    P R R+   +    RQ+R G FPD       +     G++++ +P  
Sbjct: 139 YRGTLTEAGRPS-PWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPAL 197

Query: 319 HR 324
           +R
Sbjct: 198 YR 199



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>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1621

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 62  WGWEERLGFGVGGRG 18
           WGWE R GFG GG G
Sbjct: 917 WGWETRGGFGGGGGG 931


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,430,301
Number of Sequences: 219361
Number of extensions: 1870137
Number of successful extensions: 3929
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3927
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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